Physics / Fizik
Permanent URI for this collectionhttps://hdl.handle.net/11147/6
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Article A Quantitative Description of Barite Thermodynamics, Nucleation and Growth for Reactive Transport Modelling(Elsevier, 2024) Dideriksen,K.; Zhen-Wu,B.Y.; Dobberschütz,S.; Rodríguez-Blanco,J.D.; Raahauge,P.J.; Ataman, Evren; Stipp,S.L.S.The regression of available thermodynamic data in the BaSO4–NaCl–H2O system yielded Pitzer ion interaction parameters that accurately describe the activities of aqueous species and mineral solubilities in this system. This thermodynamics description is compared with published Pitzer parameter sets, and combined with a model for the kinetics of barite nucleation and growth, based on classical nucleation theory. Both the thermodynamic and nucleation/growth models have been incorporated into the PHREEQC computer code to facilitate calculation of the extent and consequences of barite formation in natural and engineered systems. Results of geochemical modelling calculations agree adequately with the amount of barite scale thicknesses derived from calliper measurements from an oil well if the effective surface free energy of barite nuclei is assumed to be ∼50 mJ m−2. Better results, however, are achieved using a temperature dependent effective surface free energy. In contrast, calculations performed by ignoring the effects of barite nucleation lead to a substantial overestimation of the amount of scale formed in our modelled systems. The success of our mineral nucleation and growth model to describe scaling in our modelled system suggests this description of precipitation rates can be applied to many other mineral-aqueous fluid systems, in particular where supersaturation is slight and the solids forming have substantial surface free energy. © 2024 Elsevier LtdArticle Citation - WoS: 3Citation - Scopus: 4Terahertz Wavefront Engineering Using a Hard-Coded Metasurface(Springer, 2023) Noori, Aileen; Akyürek, Bora; Demirhan, Yasemin; Özyüzer, Lütfi; Güven, Kaan; Altan, Hakan; Aygün, GülnurDuring the past few years, coding metamaterials (MM) drew significant attention, where the far-field scattering/transmission pattern of the electromagnetic wave (particularly in the THz regime) can be encoded into a single or few-bit digitized phase-response of the metasurface, thereby enabling a full digital control. Single-bit MMs contain two types of unit cells where the phase becomes 0 and 1 (in units of ?), respectively. By arranging these unit cells into a 2D surface pattern, the THz wavefront can be shaped. In this work, a novel hard-coded metasurface was designed, fabricated, and experimentally investigated for multi-beam reflection of incident THz beam. The design employs stripe and checkerboard patterns of bilayer MM unit cells consisting of square gold patches with a polymer spacing layer from a gold backplane. Experimental and simulation results show that the incident wave in the 0.500–0.750 THz range can be reflected with > 95% efficiency in uniform amplitude and 1-bit coded phase. For the checkerboard metasurface pattern, the measured and analytically calculated reflection angle shows good agreement. The metasurface design is suitable for large-scale fabrication and can potentially be used as a template in the development of actively coded metasurfaces. © 2023, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.Article Citation - WoS: 11Citation - Scopus: 13Proteolysis of Micellar Β-Casein by Trypsin: Secondary Structure Characterization and Kinetic Modeling at Different Enzyme Concentrations(MDPI, 2023) Vorob’ev, Mikhail M.; Açıkgöz, Burçin Dersu; Güler, Günnur; Golovanov, Andrey V.; Sinitsyna, Olga V.Tryptic proteolysis of protein micelles was studied using β-casein (β-CN) as an example. Hydrolysis of specific peptide bonds in β-CN leads to the degradation and rearrangement of the original micelles and the formation of new nanoparticles from their fragments. Samples of these nanoparticles dried on a mica surface were characterized by atomic force microscopy (AFM) when the proteolytic reaction had been stopped by tryptic inhibitor or by heating. The changes in the content of β-sheets, α-helices, and hydrolysis products during proteolysis were estimated by using Fourier-transform infrared (FTIR) spectroscopy. In the current study, a simple kinetic model with three successive stages is proposed to predict the rearrangement of nanoparticles and the formation of proteolysis products, as well as changes in the secondary structure during proteolysis at various enzyme concentrations. The model determines for which steps the rate constants are proportional to the enzyme concentration, and in which intermediate nano-components the protein secondary structure is retained and in which it is reduced. The model predictions were in agreement with the FTIR results for tryptic hydrolysis of β-CN at different concentrations of the enzyme.Article Citation - WoS: 17Citation - Scopus: 19Bacterial Surface, Biofilm and Virulence Properties of Listeriamonocytogenes Strains Isolated From Smoked Salmon and Fish Food Contact Surfaces(Elsevier, 2021) Sudağıdan, Mert; Özalp, Veli Cengiz; Öztürk, Orhan; Yurt, Mediha Nur Zafer; Yavuz, Orhan; Taşbaşı, Behiye Busra; Uçak, Samet; Mavili, Zehra Seda; Çoban, AyşenBiofilm formation is one of the defense mechanisms of bacteria against disinfectants and antimicrobials. The aim of this study was to determine biofilm-forming L.monocytogenes from fish processing and salmon surfaces. Biofilm formation at 15, 25, 37, and 40 degrees C from 1 to 6-days period, adhesion to glass, polypropylene and stainless-steel surfaces, bacterial surface charge and hydrophobicity was determined. Adhesion behavior of the strains was evaluated using Surface Plasmon Resonance (SPR) technique. Totally 32 L.monocytogenes strains belonging to serogroups IIa (n:17), IIc(n:14) and IVb(n:1) were detected from 1320 swabs and 16 smoked salmons. Biofilm formation tests revealed that 21 strains form biofilm on microplate by increasing time and temperature. Although all strains strongly formed biofilm on glass surfaces, two strains slightly adhered polypropylene surfaces. High surface roughness of stainless-steel FeCrNi alloy (Ra = 4.15 nm) and CoCrMo alloy (Ra = 10.75 nm) increased biofilm formation of L.monocytogenes on stainless-steel surfaces. Zeta potential results showed that non-biofilm formers were more negatively charged after 6-days and hydrophobicity couldn't give a distinct distribution among biofilm formers and non-formers. SPR analysis method was evaluated to distinguish biofilm formers to adhere SPR gold chip surfaces. PCR results revealed that all strains were positive for hylA, iap, actA, plcA, plcB, fri, flaA, inlA, inlB, inlC, inlJ, and lmo1386 genes. Additionally, all strains were susceptible to penicillin, ampicillin, meropenem, erythromycin and trimethoprim-sulfamethoxazole. Biofilm-forming, virulence properties of L. monocytogenes strains isolated from fish processing surfaces and smoked salmons were evaluated and SPR was used to differentiate biofilm formers as a sensitive technique for biofilm studies.Article Citation - WoS: 1Citation - Scopus: 1Fully Three-Dimensional Analysis of a Photonic Crystal Assisted Silicon on Insulator Waveguide Bend(World Scientific Publishing, 2018) Eti, Neslihan; Çetin, Zebih; Sözüer, Hüseyin SamiA detailed numerical study of low-loss silicon on insulator (SOI) waveguide bend is presented using the fully three-dimensional (3D) finite-difference time-domain (FDTD) method. The geometrical parameters are optimized to minimize the bending loss over a range of frequencies. Transmission results for the conventional single bend and photonic crystal assisted SOI waveguide bend are compared. Calculations are performed for the transmission values of TE-like modes where the electric field is strongly transverse to the direction of propagation. The best obtained transmission is over 95% for TE-like modes.Article Evaluation of exact quantum query complexities by semidefinite programming(Springer Verlag, 2019) Uyanık, KıvançOne of the difficult tasks in quantum computation is inventing efficient exact quantum algorithms, which are the quantum algorithms that output the correct answer with certainty on any input. We improve and generalize the semidefinite programming (SDP) method of Montanaro et al. (Algorithmica 71:775-796, 2015) in order to evaluate exact quantum query complexities of partial functions. We present a more systematical approach to achieve the inspired result by Montanaro et al. for the function EXACT24, which is the Boolean function of 4 bits that output only when 2 of the input bits are equal to 1. The same approach also allows us to reduce the size of the ancilla space used by the algorithms that evaluate symmetric functions like EXACT36. We employ the generalized SDP to verify the complexities of the earliest and best known quantum algorithms in the literature, namely, Deutsch-Jozsa and Grover algorithms for a small number of input bits. We utilized the method to solve the weight decision problem of bit strings with lengths up to 10 bits and observed that the generalized SDP gives better exact quantum query complexities than the known methods. Finally, we test the method on some selected functions and demonstrate that they all exhibit quantum speedup.Article Citation - WoS: 24Citation - Scopus: 25Performance Enhancement of Inverted Perovskite Solar Cells Through Interface Engineering by Tpd Based Bidentate Self-Assembled Monolayers(Elsevier, 2020) Arkan, Emre; Arkan, M. Zeliha Yiğit; Ünal, Muhittin; Yalçın, Eyüp; Aydın, Hasan; Çelebi, Cem; Demic, ŞerafettinPerovskite solar cells (PSCs) have recently appeared as a promising photovoltaic technology and attracted great interest in both photovoltaic industry and academic community. Numerous active researches related to the material processing and operational aspects of device fabrication are under progress since PSCs have a great potential for attaining higher performance compared to that of other solar cell technologies. In particular, interfacial engineering is a crucial issue for obtaining high efficiency in solar cells where perovskite absorber layer is deposited between hole and electron transport layers. In inverted type architecture, PEDOT:PSS is used as both hole transport layer and surface modifier; but unfortunately, this material bears instability due to its acidic nature. Thus, self-assembled monolayers (SAMs) not only are considered as suitable alternative, but also their application is regarded as an efficient and cost effective method to modify electrode surface since it provides a robust and stable surface coverage. In this context, we have employed two novel N,N'-bis(3-methylphenyl)-N,N'-diphenylbenzidine (TPD) based SAM molecules to customize indium tin oxide (ITO) surface in inverted type PSCs. Furthermore, fine-tuning of spacer groups enables us to study device performance depending on molecular structure. This study proposes promising materials for anode interface engineering and provides a feasible approach for production of organic semiconductor based SAMs to achieve high performance PSCs.Article Citation - WoS: 4Citation - Scopus: 5Conductance Fluctuations in Undoped Hydrogenated Amorphous Silicon-Germanium Alloy Thin Films(Elsevier Ltd., 2002) Güneş, Mehmet; Johanson, Robert E.; Kasap, Safa O.; Yang, Jeffrey C.; Guha, SubhenduWe report coplanar conductance fluctuations of device quality, undoped hydrogenated amorphous silicon-germanium alloy thin films (a-SiGe:H) measured from 430 to 490 K. The a-SiGe:H alloys produce noise power spectra similar to coplanar undoped a-Si:H films in the same temperature range. The noise power spectrum S(n) does not fit a single 1/fα power law but rather has two distinct regions, each accurately fitted by a power law, but with different slopes. The low frequency slope α1 is similar to that observed in undoped a-Si:H films varying from 1.30 to 1.46 for different Ge concentrations and shows a slight temperature dependence. At higher frequencies, the slope α2 is less than unity and temperature independent but depends on the Ge content of the film. α2 decreases from 0.60 for no Ge (pure a-Si:H) to 0.15 for 40 at.% Ge. The noise power at lower frequencies increases and at higher frequencies decreases substantially as the temperature increases from 430 to 490 K. We infer that similar noise mechanisms are operating in undoped a-SiGe:H and a-Si:H films but that the Ge content is influencing the noise, particularly the slope at higher frequencies. In addition, the noise has the expected quadratic dependence on bias current and obeys Gaussian statistics.Article Citation - WoS: 16Citation - Scopus: 18Tunneling Studies of Multilayered Superconducting Cuprate (cu,c)ba2ca3cu4o12+?(World Scientific Publishing Co. Pte Ltd, 2003) Miyakawa, Nobuaki; Tokiwa, K.; Mikusu, S.; Zasadzinski, John F.; Özyüzer, Lütfi; İshihara, T.; Kaneko, Tsutomu; Watanabe, T.; Gray, Kenneth E.Point contact tunneling data are reported in a multilayered high-T c cuprate (Cu,C)Ba2Ca3Cu4O 12+δ with Tc = 117 K. The tunneling spectra in the superconducting state (T ≪ Tc) display spectral features such as well-defined superconducting gap peak at ±Δ as well as dip-hump structures beyond the peaks. In some cases, the spectra with two-gaps have been observed, indicating the coexistence of two inequivalent superconducting layers. The statistical distribution of superconducting gap magnitude suggests two distinct kinds of superconducting gaps that may originate from two inequivalent CuO2 planes, a characteristics of multilayered cuprates with n ≥ 3.Article Citation - WoS: 7Citation - Scopus: 7Comparative Study of Annealing and Gold Dopant Effect on Dc Sputtered Vanadium Oxide Films for Bolometer Applications(Springer Verlag, 2017) Alaboz, Hakan; Demirhan, Yasemin; Yüce, Hürriyet; Aygün, Gülnur; Özyüzer, LütfiVanadium oxide (VOx) thin film has been widely used for IR detectors and it is one of the promising materials for THz detectors due to its high temperature coefficient of resistance (TCR) values. VOx films with proper TCR values have also high resistance and it restricts bolometer performance especially for uncooled bolometers. To overcome this problem, deposition at elevated temperatures or annealing approach has been accepted and used but gold co-deposition approach has been proposed recently. In this study, vanadium oxide films were fabricated on high resistivity silicon substrates by reactive direct current magnetron sputtering in different O2/Ar atmosphere at room temperature. We investigated influence of oxygen partial pressure during deposition process and fabricated VOx thin films with sufficient TCR values for bolometer applications. In order to decrease resistivity of the deposited films, post annealing and gold doping approaches were performed separately. Effect of both post annealing process and gold doping process on structural and electrical properties of VOx thin films deposited at room temperature were investigated and detailed comparison between these methods were presented. We obtained the best possible approach to obtain optimum conditions for the highly reproducible VOx thin films which have the best resistivity and suitable TCR value for bolometer applications.