IZTECH Research Centers Collection / İYTE Araştırma Merkezleri Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/11147/2636
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Article Citation - WoS: 10Citation - Scopus: 9Bi̇yomalzemelerden İ̇zole Edi̇len Staphylococcus Epidermidis Suşlarinin Yüzey Özelli̇kleri̇ni̇n Beli̇rlenmesi̇(Ankara Mikrobiyoloji Derneği, 2010) Sudağıdan, Mert; Erdem, İlker; Çavuşoğlu, Cengiz; Çiftçioğlu, MuhsinThe surface properties of bacteria play an important role on adhesion to the biomaterial surface. In this study, the surface properties of Staphylococcus epidermidis strains isolated from clinically used polymeric biomaterial surfaces were investigated on the basis of zeta potential, hydrophobicity and surface topography. A total of 10 S.epidermidis strains isolated from intravenous catheters (n= 5), endotracheal tubes (n= 3) and central venous catheters (n= 2) which were used in the patients of pulmonary Intensive Care Unit, Ege University Medical Faculty Hospital, were included to the study. Seven of those isolates were biofilm producers, inhabiting biofilm genes, 2 were non-biofilm producers, however, inhabiting biofilm genes, and 1 was non-biofilm producer, inhabiting no biofilm genes. Zeta potential analysis have been performed in 3 different buffers (phosphate-buffered saline, 1 mM potassium chloride and 1 mM potassium phosphate buffer) and at different pH values (pH 4.1-8.2), in order to simulate in vivo environment of the biomaterials. Hydrophobicities of the strains were examined by bacterial adhesion to hydrocarbon (BATH) test and the surface topography of biofilms and slime layers were visualized by atomic force microscopy (AFM) and scanning electron microscopy (SEM) methods. It was found that all strains have negative zeta potential values (surface charge) in all buffers and pH values. In hydrophobicity analysis, the highest value (86%) was determined for non-biofilm forming S.epidermidis strain YT-169b (endotracheal tube isolate) and the lowest hydrophobicity (2.5%) was determined for biofilm forming S.epidermidis strain YT-212 (central venous catheter isolate). Biofilm and slime layers of the strains were imaginated by AFM and SEM analysis in ?m scale. SEM analysis showed that bacteria highly adhered to rough surfaces on biomaterial surfaces and the produced slime layers covered the surface of bacteria. In conclusion, elucidating the surface properties of opportunistic pathogens in different physiologic buffers will give important clues for the production of non-adhesive materials and antibacterial surfaces for those bacteria. It was also estimated that designing the surface of the biomaterial to have negative surface charge in the body and to be as smooth as possible will hamper biofilm formation.Article Citation - WoS: 19Citation - Scopus: 18Biyomalzeme Yüzeylerinden İzole Edilen Metisiline Dirençli Staphylococcus Aureus Suşlarında Virülans Genlerinin Araştırılması(Ankara Microbiology Society, 2008) Sudağıdan, Mert; Çavuşoğlu, Cengiz; Bacakoğlu, FezaStafilokoklar, biyomalzeme kaynaklı nozokomiyal enfeksiyonların en önemli etkenlerindendir. Bu çalışmada, Göğüs Hastalıkları Yoğun Bakım Ünitesi (YBÜ)'nde yatan 48 hastada kullanılan polimerik biyomalzeme yüzeylerinden izole edilen metisiline dirençli 11 Staphylococcus aureus suşunda virülans genlerinin varlığının saptanması ve bunların bazılarının fenotipik ifadelerinin araştırılması amaçlanmıştır. Çalışmamızda polimeraz zincir reaksiyonu (PCR) ile özgül primerler kullanılarak, bağlanma ve biyofilm oluşumundan sorumlu genler (icaA, icaC, bap), metisilin direnç geni (mecA), enterotoksin A-E üretiminden sorumlu genler (sea, seb, sec, sed, see), toksik şok sendromu toksini geni [tst), eksfoliatif toksin A ve B genleri (eta ve etb), alfa ve beta-hemolizin genleri (hla ve hlb), stafilokokal ekzotoksin benzeri protein-1 geni (sef1), proteaz genleri (sspA, sspB, aur, serine proteaz geni), lipaz geni (geh) ve regülatör genler (sarA ve agrCA) araştırılmıştır. Ayrıca suşların fenotipik olarak biyofilm oluşturma, antibiyotik duyarlılık, proteaz ve lipaz üretimi gibi özellikleri de değerlendirilmiştir. Biyofilm testlerinde, biyofilm yapan ve "slime" üreten suşlara rastlanmamış, ancak tüm suşların biyofilm yapımında rol oynayan icaA genine sahip olduğu bulunmuştur. Bununla birlikte biyofilm yapımında rol oynayan icaC ve bap genleri tespit edilememiştir. Tüm suşlarda mecA geninin varlığı saptanmış ve suşların hepsinin oksasilin, penisilin G ve gentamisine; 10'unun eritromisine ve dokuzunun da ofloksasine dirençli olduğu bulunmuştur. İzolatların tümü vankomisin, teikoplanin ve ko-trimoksazole duyarlı olarak saptanmıştır. Ekzotoksin ve regülatör genlerinin taranması sonucunda, suşların sea, seti, hla, hlb ve sarA genlerini taşıdığı belirlenmiştir. PCR ile tüm suşların, çalışılan bütün proteaz genlerine (sspA, sspB, aur ve serin proteaz geni) sahip olduğu görülmüş, ancak sütlü (skim milk ve milk agar) ve kazein ağarlarda yapılan proteaz üretimi testlerinde negatif sonuç alınmıştır. Lipaz üretiminin belirlenmesi için Tween 20, Tween 80 ve tributyrin içeren besiyerleri kullanılmış ve tüm suşlarda geç dönemde (inkübasyonun üçüncü günü) pozitif sonuç alınmasına karşın, izolatların hiçbirisinde lipaz üretiminden sorumlu geh geni bulunmamıştır. Sonuç olarak, biyomalzeme yüzeylerinden izole edilen S.aureus suşlarında, araştırılan virülans genlerinden bazılarının varlığı saptanmış, ancak bunların tam olarak fenotipe yansımadığı izlenmiştir. İzolat sayısının azlığına ve tüm genlerin ekspresyonlarının fenotipik olarak çalışılamamış olmasına rağmen, bu genlerin varlığının yoğun bakım hastalan için potansiyel bir risk teşkil edebileceği düşünülmüştür.Article Exergetic Analysis of a Continuous Bi-Axially Oriented Polypropylene (bopp) Film Unit in a Plastic Processing Plant(Inderscience Enterprises Ltd., 2009) Balta, M. Tolga; Hepbaşlı, Arif; Hancıoğlu, Ebru; Özcanlı, Şevket Cihangir; Yılmazer, Ertan; Yurdakul, İbrahim; Dişbudak, ÖzgürThis paper deals with an exergy analysis of the stretching process of bi-axially oriented polypropylene films using a hot oil coiler along with stretching and crystallising unit. Exergy destructions and efficiencies in each of the system components are calculated, while the exergy loss and flow diagram (the so-called Grassmann diagram) is presented for the transverse direction (TD) unit. The so-called functional (on the product or benefit/fuel basis) and universal (on the output/input basis) exergy efficiency values of the TD unit are calculated to be 26.40% and 28.46% at a recommended exhaust air relative humidity of 0.0098 kg water/kg air, respectively.Article Citation - WoS: 9Citation - Scopus: 13X-Ray Fluorescence Spectroscopic Determination of Heavy Metals and Trace Elements in Aerial Parts of Origanum Sipyleum L From Turkey(Pharmacotherapy Group, 2016) Durmuşkahya, Cenk; Alp, Hakan; Hortooğlu, Zehra Sinem; Toktaş, Ümit; Kayalar, HüsniyePurpose: To determine the heavy metal and trace element composition of the powdered aerial parts of Origanum sipyleum L. and its water extract. Methods: The heavy metal and trace elements content of the powdered plant material and 2% aqueous extract were evaluated by x-ray fluorescence spectroscopy with silicon drift detector SDD at a resolution of 145 eV and 10,000 pulses. The process conditions were 0.1 g sample weight, process time of 300 s at a voltage of 25 kV and 50 kV, and at a current of 0.5 and 1.0 mA under helium atmosphere. Results: The major elements, K, Ca and Na, known as macronutrients, constituted 11990, 10490 and 970 ppm of the powdered drug and 8910, 2991 and 810 ppm of the water extract, respectively. Among other constituents, arsenic, lead and uranium levels were < 1, 2.1 and < 3 ppm, respectively, in the powdered material while in the aqueous extract, the levels were < 1, < 2 and 200 ppm, respectively. Conclusion: O. sipyleum is a potential source of macro- and micronutrients from which useful food additives and health supplements can be derived.Article Citation - WoS: 3Citation - Scopus: 7Elemental Analysis of Galium Incanum Sm Subsp Centrale Ehrend by X-Ray Fluorescence Spectroscopy(Pharmacotherapy Group, 2013) Kayalar, Hüsniye; Durmuşkahya, Cenk; Hortooğlu, Zehra SinemPurpose: To evaluate the content of trace elements in Galium incanum SM. subsp. centrale Ehrend. Methods: The air-dried aerial parts of the plant material were used and its water extract (2 % w/v infusion) was analysed for trace elements using x-ray fluorescence (XRF) spectrometry. Results: The aqueous extract depicted significant concentrations of macro- and micro-nutrients with heavy metal and metal oxide content of 4.07 - 6.02 and 3.19 - 4.01 % for powdered plant material and water extract, respectively. The contents of Ca (22840 ppm) and K (8204 ppm) were the highest among all the elements while Zn (45.9 ppm) and Fe (328 ppm) were also detected in significant amounts. Zn, Mn and Cu showed the highest content while those of Mg, Al, K, Ca, Fe and P lowest in the water extract. Conclusion: The presence of significant levels of Ca, K, Na, Fe, Zn, Mg, Mn and Cu in G. incanum subsp. centrale showed that this plant has notable nutrient elements. The traditional use of Gallium species as a diuretic may be attributed to its rich content of potassium.Article Citation - WoS: 27Citation - Scopus: 28An Exergetic Performance Assessment of Three Different Food Driers(SAGE Publications Inc., 2010) Hepbaşlı, Arif; Erbay, Zafer; Çolak, Neslihan; Hancıoğlu, Ebru; İçier, FilizIn this study, plum slices were dried in three different driers (tray, fluid bed, and heat pump (HP) driers). Drying experiments were carried out at an air temperature range of 45-55 °C with an air velocity of 1.5 m/s. The performance of the driers along with their main components was evaluated and compared by using the exergy analysis method. The most important component for improving the system efficiency was determined to be the fan-heater combination for both the tray and fluid bed driers, and the motor-compressor assembly for the HP drier. The exergy loss and flow diagram (the so-called Grassmann diagram) of the driers was also presented to give quantitative information regarding the proportion of the exergy input dissipated in the various system components. Effects of the drying air temperature on the performance of the drying process were discussed. The highest exergetic efficiency values were obtained to range from 72.72 to 75.66 per cent for the HP drier, followed by the tray and fluid bed driers varying between 37.94 and 39.46 per cent, and between 22.83 and 24.07 per cent, respectively.Article Citation - WoS: 30Citation - Scopus: 32Performance investigation of the drying of parsley in a tray dryer system(Inderscience Enterprises Ltd., 2010) Hancıoğlu, Ebru; Hepbaşlı, Arif; İçier, Filiz; Erbay, Zafer; Çolak, NeslihanThe performance of a tray dryer system for the parsley drying process was assessed using energy and exergy analysis methods in this study. The drying temperature ranged from 40°C to 60°C, while the drying air velocity varied from 0.5 m/s to 1.5 m/s. The higher temperature and lower velocity led to higher exergy and energy efficiencies. The exergy efficiency value for the overall system on a product/fuel basis was found to be 3.62%. The values for Specific Moisture Extraction Rate (SMER) and Specific Moisture Exergetic index (SMExR) were obtained to be 0.08 and 2.47 kg/kWh, respectively. Copyright © 2010 Inderscience Enterprises Ltd.Article Citation - WoS: 20Citation - Scopus: 20Screening Virulence Properties of Staphylococci Isolated From Meat and Meat Products(B W K Public Relations, 2009) Sudağıdan, Mert; Aydın, A.Virulence properties (biofilm formation, antibiotic susceptibility, production of extracellular enzymes and the presence of toxin genes) of staphylococci isolated from various meat and meat products were investigated. 22 Staphylococcus spp. (S. aureus n = 9, S. haemolytlcus n = 4, S. cohnii n = 3, S. saprophytics n = 3, S. hominis n = 1, S. simulans n = 1 and S. warneri n = 1) were isolated from 120 meat and meat product samples. 10 strains were biofilmformers. Although none of the strains was resistant to vancomycin, oxacillin, teicoplanin, ofloxacin and gentamicin, 8 strains were found to be resistant to penicillin and one strain was found to be resistant to erythromycin. In addition, all strains were negative for the mecA PCR. 8 strains showed lipolytic activity against Tween 80,10 strains against Tween 20, and 18 strains against tributyrin. Moreover, 9 strains showed proteolytic activity against casein, 11 strains against milk and 17 strains against skim milk containing media. Mostly S. aureus strains showed positive results for icaA-SA, nuc, geh, sspA, sspB, aur, serine protease gene, hla, hlb, set1, and etb. However, 7 of coagulase-negative staphylococci strains were found to carry see gene. As both prevalence and concentration of this bacterium were low, and no isolate contained all virulence factors, it is concluded that common hygiene and process control measures should be sufficient to control meatborne staphylococcal intoxication.