Mechanical Engineering / Makina Mühendisliği
Permanent URI for this collectionhttps://hdl.handle.net/11147/4129
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Article Citation - WoS: 28Citation - Scopus: 30Bone Marrow Stem Cells Adapt To Low-Magnitude Vibrations by Altering Their Cytoskeleton During Quiescence and Osteogenesis(TUBITAK, 2015) Demiray, Levent; Özçivici, EnginApplication of mechanical vibrations is anabolic to bone tissue, not only by guiding mature bone cells to increased formation, but also by increasing the osteogenic commitment of progenitor cells. However, the sensitivity and adaptive response of bone marrow stem cells to this loading regimen has not yet been identified. In this study, we subjected mouse bone marrow stem cell line D1-ORL-UVA to daily mechanical vibrations (0.15 g, 90 Hz, 15 min/day) for 7 days, both during quiescence and osteogenic commitment, to identify corresponding ultrastructural adaptations on cellular and molecular levels. During quiescence, mechanical vibrations significantly increased total actin content and actin fiber thickness, as measured by phalloidin staining and fluorescent microscopy. Cellular height also increased, as measured by atomic force microscopy, along with the expression of focal adhesion kinase (PTK2) mRNA levels. During osteogenesis, mechanical vibrations increased the total actin content, actin fiber thickness, and cytoplasmic membrane roughness, with significant increase in Runx2 mRNA levels. These results show that bone marrow stem cells demonstrate similar cytoskeletal adaptations to low-magnitude high-frequency mechanical loads both during quiescence and osteogenesis, potentially becoming more sensitive to additional loads by increased structural stiffness.Article Citation - WoS: 20Citation - Scopus: 22Photocatalytic Antimicrobial Effect of Tio2 Anatase Thin-Film–coated Orthodontic Arch Wires on 3 Oral Pathogens(TUBITAK, 2014) Özyıldız, Figen; Uzel, Ataç; Hazar, Ayşe Serpil; Güden, Mustafa; Ölmez, Sultan; Aras, Işıl; Karaboz, İsmailThe aim of this study was to introduce antimicrobial activity to stainless steel orthodontic arch wires by coating them with TiO2 in anatase form. Stainless steel (0.016 × 0.022 inch), D-rect (0.016 × 0.022 inch), and multistranded hammered retainer wires (0.014 × 0.018 inch) were coated with TiO2 anatase by the sol-gel dip coating method. The wires were assessed for their photocatalytic antimicrobial activity against Streptococcus mutans, Candida albicans, and Enterococcus faecalis. After illumination under UVA (315– 400 nm) at 1.0 mW/cm2 for 1 h, the reduction efficiencies of the anatase-coated arch wires were calculated by using colony-forming unit counts. All anatase-coated arch wires showed remarkable inhibitor effects against the test microorganisms under UVA. The most efficient wire on S. mutans was the stainless steel wire, with a 99.99% reduction in growth, but multistranded hammered retainer wire was the most active against both C. albicans and E. faecalis, with 98.0% and 91.68% reduction rates, respectively. TiO2-coated arch wires exposed to UVA illumination showed significant antimicrobial activity when compared with uncoated samples and coated, but not UVA-exposed, samples. Our results suggest that the antimicrobial effect of TiO2-coated arch wires in long-lasting orthodontic treatments would be beneficial for the prophylaxis of caries.Article Citation - WoS: 12Citation - Scopus: 15Morphological and Molecular Identification of Pennate Diatoms Isolated From Urla, Izmir, Coast of the Aegean Sea(TUBITAK, 2013) Kesici, Kutsal; Tüney, İnci; Sukatar, Atakan; Zeren, Doğuş; Güden, MustafaDiatoms represent an important class of aquatic phototrophs. They are not only one of the major contributors to global carbon fixation, but also play a key role in the biogeochemical cycling of silica. Molecular identification methods based on conserved DNA sequences, such as ITS (Internal Transcribed Spacer) have revolutionized our knowledge and understanding of conventional taxonomy. In this study, we aimed to compare the conventional identification methods with molecular identification methods. To do so, we isolated four diatom samples from Coast of Urla and characterized them using light microscopy (LM) and scanning electron microscopy (SEM) according to morphological features. Then, we amplified ITS regions using conventional polymerase chain reaction (PCR), sequenced the PCR products and analyzed the sequences using bioinformatic tools. Bioinformatic analysis indicated that the isolated species had high sequence similarity to Pseudo-nitzschia sp., Achnanthes sp., Amphora sp. and Cylindrotheca sp. We believe that molecular identification methods enable rapid and more reliable identification of diatom species and are crucial for monitoring harmful algal blooms.