Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection

Permanent URI for this collectionhttps://hdl.handle.net/11147/7148

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Access Right: Closed AccessSubject: search.filters.subject.Convolutional neural networks

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  • Book Part
    Citation - Scopus: 1
    Automated Analysis of Phase-Contrast Optical Microscopy Time-Lapse Images: Application To Wound Healing and Cell Motility Assays of Breast Cancer
    (Elsevier, 2023) Erdem, Yusuf Sait; Ayanzadeh, Aydın; Mayalı, Berkay; Balıkçı, Muhammed; Belli, Özge Nur; Uçar, Mahmut; Yalçın Özuysal, Özden; Pesen Okvur, Devrim; Önal, Sevgi; Morani, Kenan; Iheme, Leonardo Obinna; Töreyin, Behçet Uğur
    This chapter describes a workflow for analyzing phase-contrast microscopy (PCM) data from two fundamental types of biomedical assays: assays for cell motility and assays for wound healing. The workflow of the analysis is composed of the methods for acquiring, restoring, segmenting, and quantifying biomedical data. In the literature, there have been separate methods aimed at specific stages of PCM data analysis. Nonetheless, there has never been a complete workflow for all stages of analysis. This work is an innovation that proposes an end-to-end workflow for image pre-processing, deep learning segmentation, tracking, and quantification stages in cell motility and wound healing assay analyses. The findings indicate that domain knowledge can be used to make simple but significant improvements to the results of cutting-edge methods. Furthermore, even for deep learning-based methods, pre-processing is clearly a necessary step in the workflow. © 2023 Elsevier Inc. All rights reserved.
  • Article
    Citation - WoS: 43
    Citation - Scopus: 47
    Semantic Segmentation of Outdoor Panoramic Images
    (Springer, 2021) Orhan, Semih; Baştanlar, Yalın
    Omnidirectional cameras are capable of providing 360. field-of-view in a single shot. This comprehensive view makes them preferable for many computer vision applications. An omnidirectional view is generally represented as a panoramic image with equirectangular projection, which suffers from distortions. Thus, standard camera approaches should be mathematically modified to be used effectively with panoramic images. In this work, we built a semantic segmentation CNN model that handles distortions in panoramic images using equirectangular convolutions. The proposed model, we call it UNet-equiconv, outperforms an equivalent CNN model with standard convolutions. To the best of our knowledge, ours is the first work on the semantic segmentation of real outdoor panoramic images. Experiment results reveal that using a distortion-aware CNN with equirectangular convolution increases the semantic segmentation performance (4% increase in mIoU). We also released a pixel-level annotated outdoor panoramic image dataset which can be used for various computer vision applications such as autonomous driving and visual localization. Source code of the project and the dataset were made available at the project page (https://github.com/semihorhan/semseg-outdoor-pano). © 2021, The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature.