Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 17Citation - Scopus: 18Electric Field Controlled Heat Transfer Through Silicon and Nano-Confined Water(Taylor & Francis, 2019) Yenigün, Onur; Barışık, MuratNanoscale heat transfer between two parallel silicon slabs filled with deionized water was studied under varying electric field in heat transfer direction. Two oppositely charged electrodes were embedded into the silicon walls to create a uniform electric field perpendicular to the surface, similar to electrowetting-on-dielectric technologies. Through the electrostatic interactions, (i) surface charge altered the silicon/water interface energy and (ii) electric field created orientation polarization of water by aligning dipoles to the direction of the electric field. We found that the first mechanism can manipulate the interface thermal resistance and the later can change the thermal conductivity of water. By increasing electric field, Kapitza length substantially decreased to 1/5 of its original value due to enhanced water layering, but also the water thermal conductivity lessened slightly since water dynamics were restricted; in this range of electric field, heat transfer was doubled. With a further increase of the electric field, electro-freezing (EF) developed as the aligned water dipoles formed a crystalline structure. During EF (0.53 V/nm), water thermal conductivity increased to 1.5 times of its thermodynamic value while Kapitza did not change; but once the EF is formed, both Kapitza and conductivity remained constant with increasing electric field. Overall, the heat transfer rate increased 2.25 times at 0.53 V/nm after which it remains constant with further increase of the electric field.Article Citation - WoS: 15Citation - Scopus: 16Parametrizing Nonbonded Interactions Between Silica and Water From First Principles(Elsevier, 2020) Özçelik, H. Gökberk; Sözen, Yiğit; Şahin, Hasan; Barışık, MuratSilica has been used in a vast number of micro/nano-fluidic technologies where interactions of water with silica at the molecular level play a key role. In such small systems, an understanding of mass and heat transport or surface wetting relies on accurate calculations of the water-silica interface coupling through atomic interactions. Molecular dynamics (MD) is a convenient tool for such use, but force field parameters for nonbonded interactions are required as an input, which are very limited in literature. These interaction parameters can be predicted by density functional theory, but dispersion forces are not calculated in standard models for electron correlations that additional correction models have been proposed at different levels of sophistications, and still under development. Accordingly, this work employs state of the art quantum chemistry to compute the binding energies. Force field parameters for silica/water van der Waals interactions were calculated, and later tested in MD simulations of water droplet on silica surface. While the standard dispersion corrections overestimated the binding energy, Becke-Johnson model yielded interactions parameters recovering experimentally measured wetting behavior of silica with a water contact angle of approximately 12.4 degrees on the flat and clean silica surface. Results will be useful for the current molecular modelling attempts by providing transferable parameters for simple silica/water van der Waals interactions as an alternative to existing complex surface interaction models.Conference Object Molecular Dynamics Study of the Thermal Conductivity of Graphene Coated Copper(Avestia Publishing, 2019) Toprak, Kasım; Ersavaş, GizemIn this study, the thermal conductivity of various size of pure copper, pure graphene and, different number of layer graphene coated copper models are studied using non-equilibrium molecular dynamics (NEMD) simulations. Our findings show that the thermal conductivity of graphene coated copper is higher than the uncoated ones. Furthermore, results also indicate that single layer graphene (SLG) model has the highest thermal conductivity as compared to the other model. Even though multiple layer graphene (MLG) has lower thermal conductivity value compare to SLG, this study shows that the thermal conductivity of MLG coated copper has higher thermal conductivity than SLG coated one. The most important finding in this study suggests that the thermal conductivity of copper can be improved using high thermal conductivity materials like graphene. © 2019, Avestia Publishing.Article Citation - WoS: 37Citation - Scopus: 38Wetting of Chemically Heterogeneous Striped Surfaces: Molecular Dynamics Simulations(American Institute of Physics, 2018) Nguyen, Chinh Thanh; Barışık, Murat; Kim, BoHungUsing molecular dynamics simulations, we thoroughly investigated the wetting behaviors of a chemically heterogeneous striped substrate patterned with two different wetting materials, face-centered cubic gold and face-centered cubic silver. We analyzed the density distributions, normal stress distributions, surface tensions, and contact angles of a water droplet placed on the substrates at different heterogeneities. We found that the density and stress profile of the water droplet near the substrate-water interface were noticeably affected by altering the gold and silver contents in the substrate. Specifically, a greater portion of gold (more wetting) or smaller portion of silver (less wetting) in the substrate composition induced higher densities and higher normal stresses in the vicinity of the substrate surface. Also, it was observed that the surface tensions at liquid-vapor interface and solid-vapor interface were not largely impacted by the change of the substrate composition while the solid-liquid surface tension decreased exponentially with increasing fraction of gold. Most importantly, we found that contact angle of a nanometer-sized water droplet resting on the chemically heterogeneous striped substrate does not show linear dependence on corresponding surface fractions like that predicted by Cassie-Baxter model at the macro-scale. Consequently, we proposed a method for successfully predicting the contact angle by including the critical effects of the substrate heterogeneity on both surface tensions and line tension at the three-phase contact line of the water droplet and the chemically striped substrate.Article Silika Yüzeylerin Islanma Hareketlerinin Moleküler Dinamik ile Modellenmesi(Gazi Üniversitesi, 2018) Barışık, MuratYeni üretim tekniklerine paralel olarak nano-boyutlu teknolojiler çok geniş bir uygulama alanında kullanılmaya başlanmakta ve yeni uygulamalar geliştirmek için keşfedilmesi ve anlaşılması gereken konular süratle artmaktadır. Bu doğrultuda, yeni uygulamalarda sıkça yer bulan silikon ve silikon-dioksitin mikro/nano boyutlardaki malzeme özelliklerinin anlaşılmasına büyük ihtiyaç oluşmaktadır. Özellikle bu yüzeylerin ıslanma hareketlerinin anlaşılabilmesi ve hatta kullanılacak uygulamaya göre ayarlanabilmesi sayısız uygulama için önem arz etmektedir. Bu nedenlerle, nano-teknolojide sıkça kullanılan silikon-dioksit malzemesinin ve su moleküllerinin nano-ölçeklerde moleküler olarak modellenmesi bu çalışmada gerçekleştirildi. Modelleme molekuler dinamik hesaplamaları ile yapıldı. Silikon-dioksit yüzey üzerinde nano su damlacıkları oluşturup, denge halinde oluşan ıslatma açısı ölçümleri yapıldı. Literatürde işlem yükünü azaltmak için sıklıkla uygulanan, katı yüzey termal titreşimlerinin ıslatmaya olan etkisinin ihmal edilmesi ve modellenmemesinin ıslatma açısına olan etkisi incelendi. Katı moleküllerin termal titreşimlerinin ıslatma modellenen ıslatma fiziğine baskın bir etkisi olduğu görüldü. Geçtiğimiz yıllarda doğa taklidi olarak bilinen çalışma çevreleri tarafından hayata geçirilmeye çalışılan Lotus yaprağı etkisi temelli yüzey ıslatma kontrolu moleküler seviyede uygulandı. Yüzey üzerinde oluşturulan nano boyutlardaki yüzey yapılarının ıslanma açısını değiştirebildiği gösterildi. Temiz (0 0 1) silika yüzeyinde nano ölçek çizgi gerilimi etkisi altında ölçülen ıslanma açısının deneysel silika ıslanma açısı aralığında olduğu bulundu.Article Citation - WoS: 44Citation - Scopus: 47Electric Field Controlled Transport of Water in Graphene Nano-Channels(American Institute of Physics, 2017) Çelebi, Alper Tunga; Barışık, Murat; Beşkök, AliMotivated by electrowetting-based flow control in nano-systems, water transport in graphene nano-channels is investigated as a function of the applied electric field. Molecular dynamics simulations are performed for deionized water confined in graphene nano-channels subjected to opposing surface charges, creating an electric field across the channel. Water molecules respond to the electric field by reorientation of their dipoles. Oxygen and hydrogen atoms in water face the anode and cathode, respectively, and hydrogen atoms get closer to the cathode compared to the oxygen atoms near the anode. These effects create asymmetric density distributions that increase with the applied electric field. Force-driven water flows under electric fields exhibit asymmetric velocity profiles and unequal slip lengths. Apparent viscosity of water increases and the slip length decreases with increased electric field, reducing the flow rate. Increasing the electric field above a threshold value freezes water at room temperature.Article Citation - WoS: 24Citation - Scopus: 26Role of Surface Oxidation on the Size Dependent Mechanical Properties of Nickel Nanowires: a Reaxff Molecular Dynamics Study(Royal Society of Chemistry, 2017) Aral, Gürcan; Islam, Md Mahbubul; Van Duin, Adri C. T.Highly reactive metallic nickel (Ni) is readily oxidized by oxygen (O2) molecules even at low temperatures. The presence of the naturally resulting pre-oxide shell layer on metallic Ni nano materials such as Ni nanowires (NW) is responsible for degrading the deformation mechanisms and related mechanical properties. However, the role of the pre-oxide shell layer on the metallic Ni NW coupled with the complicated mechanical deformation mechanism and related properties have not yet been fully and independently understood. For this reason, the ReaxFF reactive force field for Ni/O interactions was used to investigate the effect of surface oxide layers and the size-dependent mechanical properties of Ni NWs under precisely controlled tensile loading conditions. To directly quantify the size dependent surface oxidation effect on the tensile mechanical deformation behaviour and related properties for Ni NWs, first, ReaxFF-molecular dynamics (MD) simulations were carried out to study the oxidation kinetics on the free surface of Ni NWs in a molecular O2 environment as a function of various diameters (D = 5.0, 6.5, and 8.0 nm) of the NWs, but at the same length. Single crystalline, pure metallic Ni NWs were also studied as a reference. The results of the oxidation simulations indicate that a surface oxide shell layer with limiting thickness of ∼1.0 nm was formed on the free surface of the bare Ni NW, typically via dissociation of the O-O bonds and the subsequent formation of Ni-O bonds. Furthermore, we investigated the evolution of the size-dependent intrinsic mechanical elastic properties of the core-oxide shell (Ni/NixOy) NWs by comparing them with their un-oxidized counterparts under constant uniaxial tensile loading. We found that the oxide shell layer significantly decreases the mechanical properties of metallic Ni NW as well as facilitates the initiation of plastic deformation as a function of decreasing diameter. The disordered oxide shell layer on the Ni NW's surface remarkably reduces the yield stress and Young's modulus, due to the increased softening effects with the decreasing NW diameter, compared to un-oxidized counterparts. Moreover, the onset of plastic deformation occurs at a relatively low yielding strain and stress level for the smaller diameter of oxide-coated Ni NWs in comparison to their pure counterparts. Furthermore, for pure Ni NWs, Young's modulus, the yielding stress and strain slightly decrease with the decrease in the diameter size of Ni NWs.Article Citation - WoS: 19Citation - Scopus: 22Thermal Conductivity Engineering of Bulk and One-Dimensional Si-Ge Nanoarchitectures(Taylor and Francis Ltd., 2017) Kandemir, Ali; Özden, Ayberk; Çağın, Tahir; Sevik, CemVarious theoretical and experimental methods are utilized to investigate the thermal conductivity of nanostructured materials; this is a critical parameter to increase performance of thermoelectric devices. Among these methods, equilibrium molecular dynamics (EMD) is an accurate technique to predict lattice thermal conductivity. In this study, by means of systematic EMD simulations, thermal conductivity of bulk Si-Ge structures (pristine, alloy and superlattice) and their nanostructured one dimensional forms with square and circular cross-section geometries (asymmetric and symmetric) are calculated for different crystallographic directions. A comprehensive temperature analysis is evaluated for selected structures as well. The results show that one-dimensional structures are superior candidates in terms of their low lattice thermal conductivity and thermal conductivity tunability by nanostructuring, such as by diameter modulation, interface roughness, periodicity and number of interfaces. We find that thermal conductivity decreases with smaller diameters or cross section areas. Furthermore, interface roughness decreases thermal conductivity with a profound impact. Moreover, we predicted that there is a specific periodicity that gives minimum thermal conductivity in symmetric superlattice structures. The decreasing thermal conductivity is due to the reducing phonon movement in the system due to the effect of the number of interfaces that determine regimes of ballistic and wave transport phenomena. In some nanostructures, such as nanowire superlattices, thermal conductivity of the Si/Ge system can be reduced to nearly twice that of an amorphous silicon thermal conductivity. Additionally, it is found that one crystal orientation, < 100 >, is better than the < 111 > crystal orientation in one-dimensional and bulk SiGe systems. Our results clearly point out the importance of lattice thermal conductivity engineering in bulk and nanostructures to produce high-performance thermoelectric materials.Article Citation - WoS: 130Citation - Scopus: 135Thermal Transport Properties of Mos2 and Mose2 Monolayers(IOP Publishing Ltd., 2016) Kandemir, Ali; Yapıcıoğlu, Haluk; Kınacı, Alper; Çalın, Tahir; Sevik, CemThe isolation of single- to few-layer transition metal dichalcogenides opens new directions in the application of two-dimensional materials to nanoelectronics. The characterization of thermal transport in these new low-dimensional materials is needed for their efficient implementation, either for general overheating issues or specific applications in thermoelectric devices. In this study, the lattice thermal conductivities of single-layer MoS2 and MoSe2 are evaluated using classical molecular dynamics methods. The interactions between atoms are defined by Stillinger-Weber-type empirical potentials that are developed to represent the structural, mechanical, and vibrational properties of the given materials. In the parameterization of the potentials, a stochastic optimization algorithm, namely particle swarm optimization, is utilized. The final parameter sets produce quite consistent results with density functional theory in terms of lattice parameters, bond distances, elastic constants, and vibrational properties of both single-layer MoS2 and MoSe2. The predicted thermal properties of both materials are in very good agreement with earlier first-principles calculations. The discrepancies between the calculations and experimental measurements are most probably caused by the pristine nature of the structures in our simulations.Article Citation - WoS: 33Citation - Scopus: 39Molecular Free Paths in Nanoscale Gas Flows(Springer Verlag, 2015) Barışık, Murat; Beşkök, AliAverage distance traveled by gas molecules between intermolecular collisions, known as the mean free path (MFP), is a key parameter for characterizing gas flows in the entire Knudsen regime. Recent literature presents variations in MFP as a function of the surface confinement, which is in disagreement with the kinetic theory and leads to wrong physical interpretations of nanoscale gas flows. This controversy occurs due to erroneous definition and calculation practices, such as consideration of gas wall collisions, using local bins smaller than a MFP, and utilizing time frames shorter than a mean collision time in the MFP calculations. This study reports proper molecular MFP calculations in nanoscale confinements by using realistic molecular surfaces. We utilize molecular dynamics (MD) simulations to calculate gas MFP in three-dimensional periodic systems of various sizes and for force-driven gas flows confined in nano-channels. Studies performed in the transition flow regime in various size nano-channels and under a range of gas–surface interaction strengths have shown isotropic mean travelled distance and MFP values in agreement with the kinetic theory regardless of the surface forces and surface adsorption effects. Comparison of the velocity profiles obtained in MD simulations with the linearized Boltzmann solutions at predicted Knudsen values shows good agreement in the bulk of the channels, while deviations in the near wall region due to the influence of surface forces are reported.