Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - Scopus: 34Machine Learning Methods for Microrna Gene Prediction(Humana Press Inc., 2014) Saçar,M.D.; Allmer,J.MicroRNAs (miRNAs) are single-stranded, small, noncoding RNAs of about 22 nucleotides in length, which control gene expression at the posttranscriptional level through translational inhibition, degradation, adenylation, or destabilization of their target mRNAs. Although hundreds of miRNAs have been identified in various species, many more may still remain unknown. Therefore, discovery of new miRNA genes is an important step for understanding miRNA-mediated posttranscriptional regulation mechanisms. It seems that biological approaches to identify miRNA genes might be limited in their ability to detect rare miRNAs and are further limited to the tissues examined and the developmental stage of the organism under examination. These limitations have led to the development of sophisticated computational approaches attempting to identify possible miRNAs in silico. In this chapter, we discuss computational problems in miRNA prediction studies and review some of the many machine learning methods that have been tried to address the issues. © Springer Science+Business Media New York 2014.Article Citation - WoS: 3Citation - Scopus: 5Deterioration of Pre-War and Rehabilitation of Post-War Urbanscapes Using Generative Adversarial Networks(SAGE Publications, 2023) Çiçek, Selen; Turhan, Gözde Damla; Taşer, AybükeThe urban built environment of contemporary cities confronts a constant risk of deterioration due to natural or artificial reasons. Especially political aggression and war conflicts have significant destructive effects on architectural and cultural heritage buildings. The post-war urbanscapes demonstrate the striking effects of the armed conflicts during the hot war encounters. However, the residues of the urbanscapes become the actual indicators of damage and loss. Since today we can make future predictions using a variety of machine learning algorithms, it is possible to represent hybrid projections of urban heterotopias. In this context, this research proposes to explore dystopian post-war projections for modern cities based on their architectural styles and demonstrate the utopian scenarios of rehabilitation possibilities for the damaged urban built environment of post-war cities by using generative adversarial network (GAN) algorithms. Two primary datasets containing the post-war and pre-war building facades have been given as the input data for the CycleGAN and pix2pix GAN models. Thus, two different image-to-image GAN models have been compared regarding their ability to produce legible building facade projections in architectural features. Besides, the machine learning process results have been discussed in terms of cities' utopian and dystopian future predictions, demonstrating the war conflicts' immense effects on the built environment. Moreover, the immediate consequence of the destructive aggression on tangible and intangible architectural heritage would become visible to inhabitants and policymakers when the AI-generated rehabilitation potentials have been exposed.Conference Object Citation - Scopus: 1A Novel Feature To Predict Buggy Changes in a Software System(Springer, 2022) Yılmaz, Rahime; Nalçakan, Yağız; Haktanır, ElifResearchers have successfully implemented machine learning classifiers to predict bugs in a change file for years. Change classification focuses on determining if a new software change is clean or buggy. In the literature, several bug prediction methods at change level have been proposed to improve software reliability. This paper proposes a model for classification-based bug prediction model. Four supervised machine learning classifiers (Support Vector Machine, Decision Tree, Random Forrest, and Naive Bayes) are applied to predict the bugs in software changes, and performance of these four classifiers are characterized. We considered a public dataset and downloaded the corresponding source code and its metrics. Thereafter, we produced new software metrics by analyzing source code at class level and unified these metrics with the existing set. We obtained new dataset to apply machine learning algorithms and compared the bug prediction accuracy of the newly defined metrics. Results showed that our merged dataset is practical for bug prediction based experiments. © 2022, The Author(s), under exclusive license to Springer Nature Switzerland AG.