Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Spatial Graphoids(Birkhauser, 2023) Gugumcu, Neslihan; Kauffman, Louis H.; Pongtanapaisan, PuttipongTo study knotted graphs with open ends arising in proteins, we introduce virtual graphoids, which are virtual spatial graph diagrams with two distinguished degree-one vertices modulo graph Reidemeister moves applied away from the distinguished vertices. Generalizing previously known results, we give topological interpretations of graphoids. By analyzing the Yamada polynomial, we provide bounds for the crossing numbers. As an application, we can produce nontrivial graphoids by verifying that they satisfy adequacy conditions in the same spirit as Lickorish and Thistlethwaite’s notion of adequate links. © 2023, The Author(s), under exclusive licence to Springer Nature Switzerland AG.Article Citation - WoS: 7Citation - Scopus: 8Invariants of Multi-Linkoids(Springer Basel Ag, 2023) Gabrovsek, Bostjan; Güğümcü, NeslihanIn this paper, we extend the definition of a knotoid to multilinkoids that consist of a finite number of knot and knotoid components. We study invariants of multi-linkoids, such as the Kauffman bracket polynomial, ordered bracket polynomial, the Kauffman skein module, and the T-invariant in relation with generalized T-graphs.Article Citation - WoS: 8Citation - Scopus: 8Invariants of Bonded Knotoids and Applications To Protein Folding(MDPI, 2022) Güğümcü, Neslihan; Gabrovsek, Bostjan; Kauffman, Louis H.In this paper, we study knotoids with extra graphical structure (bonded knotoids) in the settings of rigid vertex and topological vertex graphs. We construct bonded knotoid invariants by applying tangle insertion and unplugging at bonding sites of a bonded knotoid. We demonstrate that our invariants can be used for the analysis of the topological structure of proteins.Article Citation - WoS: 4Citation - Scopus: 4Quantum Invariants of Knotoids(Springer, 2021) Güğümcü, Neslihan; Kauffman, Louis H.In this paper, we construct quantum invariants for knotoid diagrams in R-2. The diagrams are arranged with respect to a given direction in the plane (Morse knotoids). A Morse knotoid diagram can be decomposed into basic elementary diagrams each of which is associated to a matrix that yields solutions of the quantum Yang-Baxter equation. We recover the bracket polynomial, and define the rotational bracket polynomial, the binary bracket polynomial, the Alexander polynomial, the generalized Alexander polynomial and an infinity of specializations of the Homflypt polynomial for Morse knotoids via quantum state sum models.