Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Conference Object Df-Segdiff: Adiffusion Segmentation Model Using a New Distributed Parallel Computing Algorithm(IEEE, 2024) Mi, Hancang; Gan, Hong-Seng; Wang, Xiaoyi; Shimizu, Akinobu; Ramlee, Muhammad Hanif; Unlu, Mehmet ZubeyirBrain tumours are among the most life-threatening diseases, and automatic segmentation of brain tumours from medical images is crucial for clinicians to identify and quantify tumour regions with high precision. While traditional segmentation models have laid the groundwork, diffusion models have since been developed to better manage complex medical data. However, diffusion models often face challenges related to insufficient parallel computing power and inefficient GPU utilization. To address these issues, we propose the DF-SegDiff model, which includes diffusion segmentation, parallel data processing, a distributed training model, a dynamic balancing parameter and model fusion. This approach significantly reduces training time while achieving an average Dice score of 0.87, with several samples reaching Dice values close to 0.94. By combining BRATS2020 with the Medical Segmentation Decathlon dataset, we also integrated a comprehensive dataset containing 800 training samples and 53 test samples. Evaluation of the model using Dice, IoU, and other relevant metrics demonstrates that our method outperforms current state-of-the-art techniques.Article Citation - WoS: 3Citation - Scopus: 6Improved Cell Segmentation Using Deep Learning in Label-Free Optical Microscopy Images(TÜBİTAK - Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, 2021) Ayanzadeh, Aydın; Yalçın Özuysal, Özden; Pesen Okvur, Devrim; Önal, Sevgi; Töreyin, Behçet Uğur; Ünay, DevrimThe recently popular deep neural networks (DNNs) have a significant effect on the improvement of segmentation accuracy from various perspectives, including robustness and completeness in comparison to conventional methods. We determined that the naive U-Net has some lacks in specific perspectives and there is high potential for further enhancements on the model. Therefore, we employed some modifications in different folds of the U-Net to overcome this problem. Based on the probable opportunity for improvement, we develop a novel architecture by using an alternative feature extractor in the encoder of U-Net and replacing the plain blocks with residual blocks in the decoder. This alteration makes the model superconvergent yielding improved performance results on two challenging optical microscopy image series: a phase-contrast dataset of our own (MDA-MB-231) and a brightfield dataset from a well-known challenge (DSB2018). We utilized the U-Net with pretrained ResNet-18 as the encoder for the segmentation task. Hence, following the modifications, we redesign a novel skip-connection to reduce the semantic gap between the encoder and the decoder. The proposed skip-connection increases the accuracy of the model on both datasets. The proposed segmentation approach results in Jaccard Index values of 85.0% and 89.2% on the DSB2018 and MDA-MB-231 datasets, respectively. The results reveal that our method achieves competitive results compared to the state-of-the-art approaches and surpasses the performance of baseline approaches.