Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 2Citation - Scopus: 2A Novel Approach Utilizing Rapid Thin-Film Microextraction Method for Salivary Metabolomics Studies in Lung Cancer Diagnosis(Elsevier, 2024) Pelit, Fusun; Erbas, Ilknur; Ozupek, Nazli Mert; Gul, Merve; Sakrak, Esra; Ocakoglu, Kasim; Goksel, Ozlem; Özdemir, DurmuşThis study investigated the potential of targeted salivary metabolomics as a convenient diagnostic tool for lung cancer (LC), utilizing a rapid TFME-based method. It specifically examines TFME blades modified with SiO2 nanoparticles, which were produced using a custom-made coating system. Validation of the metabolite biomarker analysis was performed by these blades using liquid chromatography-tandem mass spectroscopy (LCMS/MS). The extraction efficiencies of SiO2 nanoparticle/polyacrylonitrile (PAN) composite-coated blades were compared for 18 metabolites. Response surface methodology (RSM) was used to optimize the analysis conditions. Linear calibration plots were obtained for all metabolites at concentrations between 0.025 to 4.0 mu g/mL in the presence of internal standard, with correlation coefficients (R-2) ranging from 0.9975 to 0.9841. The limit of detection (LOD) and limit of quantitation (LOQ) were in the range of 0.014 to 0.97 mu g mL(-1) and 0.046 to 3.20 mu gmL(-1), respectively. The %RSD values for all analytes were within the acceptable range (less than 20 %) for the proposed method. The method was applied to the saliva samples of 40 patients with LC and 38 healthy controls. The efficacy of metabolites for LC diagnosis was determined by in silico methods and the results reveal that phenylalanine and purine metabolism metabolites (e.g., hypoxanthine) are of great importance for LC diagnosis. Furthermore, potentially significant biomarker analysis results from the ROC curve data reveal that proline, hypoxanthine, and phenylalanine were identified as potential biomarkers for LC diagnosis.Article Citation - WoS: 28Citation - Scopus: 33Rapid Detection of Green-Pea Adulteration in Pistachio Nuts Using Raman Spectroscopy and Chemometrics(John Wiley and Sons Inc., 2021) Taylan, Osman; Çebi, Nur; Yılmaz, Mustafa Tahsin; Sağdıç, Osman; Özdemir, Durmuş; Balubaid, MohammedBACKGROUND Ground pistachio nut is prone to adulteration because of its high economic value and wide usage. Green pea is known as the main adulterant in frauds involving pistachio nuts. The present study developed a new, rapid, reliable and low-cost methodology by using a portable Raman spectrometer in combination with chemometrics for the detection of green pea in pistachio nuts. RESULTS Three different methods of Raman spectroscopy-based chemometrics analysis were developed for the determination of green-pea adulteration in pistachio nuts. The first method involved the development of hierarchical cluster analysis (HCA) and principal component analysis (PCA), which differentiated authentic pistachio nuts from green pea and green pea-adulterated samples. The best classification pattern was observed in the adulteration range of 20-80% (w/w). In addition to classification methods, partial least squares regression (PLSR) and genetic algorithm-based inverse least squares (GILS) were also used to develop multivariate calibration models to determine quantitatively the degree of green-pea adulteration in grounded pistachio nuts. The spectral range of 1790-283 cm(-1)was used in the case of multivariate data analysis. A green-pea adulteration level of 5-80% (w/w) was successfully identified by PLSR and GILS. The correlation coefficient of determination (R-2) was determined as 0.91 and 0.94 for the PLSR and GILS analyses, respectively. CONCLUSION A Raman spectrometer combined with chemometrics has a high capability with regard to the detection of adulteration in pistachio nuts, combined with low cost, strong reliability, a high level of accuracy, rapidity of analysis, and minimum sample preparation.Article Citation - WoS: 43Citation - Scopus: 48Determination of Honey Adulteration With Beet Sugar and Corn Syrup Using Infrared Spectroscopy and Genetic-Algorithm Multivariate Calibration(Wiley, 2018) Başar, Başak; Özdemir, DurmuşBACKGROUND Fourier transform infrared spectroscopy (FTIR) equipped with attenuated total reflectance accessory was used to determine honey adulteration. Adulterated honey samples were prepared by adding corn syrup, beet sugar and water as adulterants to the pure honey samples in various amounts. The spectra of adulterated and pure honey samples (n = 209) were recorded between 4000 and 600 cm(-1) wavenumber range. RESULTS CONCLUSION Genetic-algorithm-based inverse least squares (GILS) and partial least squares (PLS) methods were used to determine honey content and amount of adulterants. Results indicated that the multivariate calibration generated with GILS could produce successful models with standard error of cross-validation in the range 0.97-2.52%, and standard error of prediction between 0.90 and 2.19% (% w/w) for all the components contained in the adulterated samples. Similar results were obtained with PLS, generating slightly larger standard error of cross-validation and standard error of prediction values. The fact that the models were generated with several honey samples coming from various different botanical and geographical origins, quite successful results were obtained for the detection of adulterated honey samples with a simple Fourier transform infrared spectroscopy technique. Having a genetic algorithm for variable selection helped to build somewhat better models with GILS compared with PLS. (c) 2018 Society of Chemical IndustryArticle Citation - WoS: 90Citation - Scopus: 101A Rapid Atr-Ftir Spectroscopic Method for Classification of Gelatin Gummy Candies in Relation To the Gelatin Source(Elsevier, 2019) Çebi, Nur; Doğan, Canan Ekinci; Ekin Meşe, Ayten; Özdemir, Durmuş; Arıcı, Muhammet; Sağdıç, OsmanGelatin is widely used in gummy candies because of its unique functional properties. Generally, porcine and bovine gelatins are used in the food industry. FTIR-ATR combined with chemometrics analysis such as hierarchical cluster analysis (HCA) (OPUS Version 7.2 software), principal component analysis (PCA) (OPUS Version 7.2 software) and partial least squares-discriminant analysis (PLS-DA) (Matlab R2017b) were used for classification and discrimination of gelatin gummy candies related to their gelatin source. The spectral region between 1734 and 1528 cm(-1) was selected for chemometric analysis. The potential of FTIR spectroscopy for determination of bovine and porcine source in gummy candies was examined and validated by a real-time polymerase chain reaction (PCR) method. Twenty commercial samples were tested by developed ATR-FTIR methodology and RT-PCR technique, mutually confirming and supporting results were obtained. Gummy candies were classified and discriminated in relation to the bovine or porcine source of gelatin with 100% success without any sample preparation using FTIR-ATR technique.Article Citation - WoS: 24Citation - Scopus: 32Determination of Lignin and Extractive Content of Turkish Pine ( Pinus Brutia Ten.) Trees Using Near Infrared Spectroscopy and Multivariate Calibration(Springer Verlag, 2011) Üner, Birol; Karaman, İbrahim; Tanrıverdi, H.; Özdemir, DurmuşDetermination of quality parameters such as lignin and extractive content of wood samples by wet chemistry analyses takes a long time. Near-infrared (NIR) spectroscopy coupled with multivariate calibration offers a fast and nondestructive alternative to obtain reliable results. However, due to the complexity of the NIR spectra, some wavelength selection is generally required to improve the predictive ability of multivariate calibration methods. Pinus brutia Ten. is the most growing pine species in Turkey. Its rotation period is around 80 years; the forest products industry has widely accepted the use of Pinus brutia Ten. because of its ability to grow on a wide range of sites and its suitability to produce desirable products. Pinus brutia Ten. is widely used in construction, window door panel, floor covering, etc. Determination of lignin and extractive content of wood provides information to tree breeders on when to cut and how much chemicals are needed for the pulping and bleaching process. In this study, 58 samples of Pinus brutia Ten. trees were collected in Isparta region of Turkey, and their lignin and extractive content were determined with standard reference (TAPPI) methods. Then, the same samples were scanned with near-infrared spectrometer between 1,000 and 2,500 nm in diffuse reflectance mode, and multivariate calibration models were built with genetic inverse least squares method for both lignin and extractive content using the concentration information obtained from wet standard reference method. Overall, standard error of calibration (SEC) and standard error of prediction (SEP) ranged between 0.35% (w/w) and 2.40% (w/w).Article Citation - WoS: 4Citation - Scopus: 7Determination of Aluminum Rolling Oil Additives and Contaminants Using Infrared Spectroscopy Coupled With Genetic Algorithm Based Multivariate Calibration(Elsevier Ltd., 2010) Yalçın, Ayşegül; Ergün, Didem; İnanç Uçar, Özlem; Özdemir, DurmuşGenetic algorithm based multivariate calibration models were generated for infrared spectroscopic determination of aluminum rolling oil additives and contaminants such as gear and hydraulic oils. Two different additives and six different suspected contaminants were investigated in the base oil lubricant. Routine analysis samples from 9 different aluminum rolling systems were collected in a period of 2 months in an aluminum rolling plant and gas chromatography (GC) is used as the reference method. Infrared absorbance spectra of the samples were then collected and the reference values obtained with GC were used together with these spectra for model building. Inverse least squares method was optimized with a genetic algorithm by selecting the most contributing regions of the infrared spectra for each component. The R2 values between GC and multivariate spectroscopic determinations were around 0.99 indicating a good correlation between the two methods. Performance of genetic algorithm based multivariate calibration models were also compared with partial least squares (PLS) method. The study showed that infrared spectroscopy coupled with multivariate calibration can be used for continuous monitoring of additives and contaminants in aluminum rolling oil. By this way, analysis time is significantly reduced and simultaneous determination of all the components can be accomplished. © 2010 Elsevier B.V. All rights reserved.