Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 13Citation - Scopus: 14Synthesis of Albumin Nanoparticles in a Water-Miscible Ionic Liquid System, and Their Applications for Chlorambucil Delivery To Cancer Cells(Elsevier, 2022) Akdoğan, Yaşar; Sözer, Sümeyra Çiğdem; Akyol, Cansu; Başol, Merve; Karakoyun, Çiğdem; Çakan Akdoğan, GülçinSerum albumin has been a preferred protein to generate biodegradable and non-toxic nanoparticles (NPs) for drug delivery applications. Different methods applied for the preparation of serum albumin NPs mostly used organic solvents. Here, we prepared serum albumin NPs in an ionic liquid (IL) system. ILs are considered to be green and designer solvents with unique properties that can replace organic solvents in the synthesis of albumin NPs. Bovine serum albumin (BSA) proteins dissolved in water were transformed into BSA NPs in a water/ Triton™X (TX-100), 1-butanol/1-butyl-3-methylimidazolium trifluoromethanesulfonate (BmimCF3SO3) microemulsion-like system by using a high-speed homogenizer and crosslinker glutaraldehyde. The obtained BSA NPs have been used in drug loading and release studies with a hydrophobic anticancer drug chlorambucil (Chl). Drug loading increased as increasing the ratio of Chl incubated with BSA NPs. Monitoring the drug release by UV–Vis spectroscopy revealed a burst release at first 4 h, but two-thirds of drugs stayed with NPs upon diffusion method. On the other hand, cellular uptake of Chl loaded BSA NPs caused a significant MCF7 breast cancer cell death, whereas free Chl and unloaded BSA NPs did not have a significant effect on the cell viability. Furthermore, in vivo toxicity assessment of BSA NPs obtained in the IL system was conducted in the zebrafish animal model. It showed that zebrafish body is able to eliminate BSA NPs without any toxic side effects and encapsulation of Chl into NPs reduced the toxicity of free Chl. In summary, we showed that BSA NPs with size smaller than 200 nm could be prepared in BmimCF3SO3 mediated system. They can be used for Chl loading (up to 6.9 wt%) with a sustainable release and they induce significant cell death in Chl sensitive cancer cells up to 45% in 24 h. These results indicate that BSA NPs could be prepared alternatively in IL systems and used in drug delivery studies.Article Citation - WoS: 18Citation - Scopus: 20A Simple Desolvation Method for Production of Cationic Albumin Nanoparticles With Improved Drug Loading and Cell Uptake(Editions de Sante, 2020) Sözer, Sümeyra Çiğdem; Özmen Egesoy, Tuğçe; Başol, Merve; Çakan Akdoğan, Gülçin; Akdoğan, YaşarThe transport protein albumin has been used as a drug nanocarrier for a long time due to its versatility. Albumin is negatively charged at physiological conditions limiting its anionic drug loading capacity. However, loading of anionic drugs in the albumin nanoparticles (NPs), can be facilitated by albumin cationization. Here, we postulate a simple desolvation method for preparation of cationic albumin NPs with improved anionic drug loading. First, bovine serum albumin was cationized with ethylenediamine. Next, salicylic acid (SA) was added to the cationic bovine serum albumin (cBSA) solution prior to the desolvation. Among different desolvating agents tested, acetonitrile allowed the highest nanoparticle formation yield. The SEM analyses showed that the average size of cBSA NPs decreased from ~200 nm to ~100 nm upon SA loading. Moreover, the drug loading capacity of cBSA NPs was found to increase ~2 fold, and drug release was slower compared to BSA NPs. Finally, a significant increase in cellular uptake of cBSA NPs compared to that of native BSA NPs showed the potential for improved drug delivery. © 2020 Elsevier B.V.Article Citation - WoS: 14Citation - Scopus: 17Spectrophotometric Characterization of Plasticizer Migration in Poly(vinyl Chloride)-Based Artificial Leather(Elsevier Ltd., 2021) Akkuş Altındağ, İffet; Akdoğan, YaşarPlasticized polyvinyl chloride (PVC) is one of the most commonly used material in the manufacture of artificial leather because of its flexibility, high durability and low cost. While hundreds of plasticizers have been produced to obtain PVC films and artificial leathers, it is important to choose the correct plasticizer to produce the desired products. Therefore, here five non-phthalate type plasticizers with three levels (40 phr, 60 phr and 80 phr); trioctyl trimelliate (TOTM), tributyl trimelliate (TBTM), dioctyl terephthalate (DOTP), dioctyl adipate (DOA) and dioctyl succinate (BIO) were used to prepare plasticized PVC films. They were studied in terms of their compabilities with PVC polymer chains, and their effects on mechanical properties of PVC films. Although, linear plasticizers e.g. BIO and DOA have higher compabilities with PVC, a branched plasticizer e.g. TOTM showed higher mechanical properties. Moreover, a new spectrophotometric method for determination of plasticizer migration from PVC polymer matrix to the surface of artifical leather was developed. According to lightness change on the surface of PVC artifical leather before and after heat treatment at 70 °C, the migration rates of used plasticizers increase in this order: TOTM < TBTM < DOTP < BIO < DOA. © 2020 Elsevier B.V.Article Citation - WoS: 7Citation - Scopus: 7Increasing Spontaneous Wet Adhesion of Dopa With Gelation Characterized by Epr Spectroscopy(Elsevier Ltd., 2019) Göksel, Yaman; Akdoğan, YaşarThe presence of water molecules around both adhesive materials and surface results in the hydration barriers that weaken adhesion. In nature, mussels attach to various types of surfaces by using 3,4-dihydroxyphenylalanine (DOPA) containing mussel foot proteins. DOPA shows wet adhesive properties before and after contribution in the hydrogel formation. Here, the wet adhesive properties of DOPA modified four armed poly (ethylene glycol) polymer (PEG-(DOPA)(4)) and its hydrogels induced by (IO4)(-) or (Cr2O7)(2-) ions are compared by using electron paramagnetic resonance (EPR) spectroscopy in terms of their surface coverages. In water, spin labeled hydrophobic polystyrene (SL-PS) and hydrophilic silica (SL-SiO2) nanoparticles are prepared, and the percentages of their covered surface values are obtained. Without applying force, the adhesion to SL-PS increases in the order of PEG-(DOPA)(4) < PEG-(DOPA)(4) + (IO4)(-) hydrogel < PEG-(DOPA)(4) + (Cr2O7)(2-) hydrogel with the percentages of surface coverages 65%, 76% and 93%, respectively. Although, neither of PEG-(DOPA)(4) polymer and (IO4)(-) induced PEG-(DOPA)(4) hydrogel adhere to SL-SiO2 nanoparticle spontaneously, (Cr2O7)(2-) induced PEG-(DOPA)(4) hydrogel adhere to SL-SiO2 with a 59% of surface coverage. These results show that gelation mechanisms of DOPA have effect on the spontaneous adhesion of DOPA to the wet surfaces even for the hydrophilic silica surface.Article Citation - WoS: 33Citation - Scopus: 40Preparation of Albumin Nanoparticles in Water-In Liquid Microemulsions(Elsevier Ltd., 2019) Demirkurt, Begüm; Çakan Akdoğan, Gülçin; Akdoğan, YaşarIonic liquids (Its) with a variety of properties have been considered a unique class of solvents. Using ILs in microemulsions as oil substitutes provides environmentally benign media for various applications including nanoparticle synthesis. Here, bovine serum albumin nanoparticles (BSA NPs) widely used in drug delivery studies were prepared in nano-sized water droplets of water-in-IL (W/IL) microemulsion systems. A hydrophobic IL of 1-butyl-3-methylimidazolium hexafluorophosphate (BmimPF(6)) was used as oil component in place of oils (castor oil, olive oil, etc.) and/or conventional organic solvents (cyclohexane, dichloromethane, etc.) in an emulsification method. In order to obtain spherical BSA NPs, high speed homogenizer treatment was applied followed by glutaraldehyde addition. Effects of glutaraldehyde, speed of homogenizer, type of surfactants and compositional fractions of the microemulsion components on the formation of water droplets and/or preparation of BSA NPs were studied using FTIR, EPR, DLS, and SEM techniques. Optimization of these preparation parameters showed that 3 wt% of BSA in a water/Tween 20/BmimPF(6) microemulsion with 20:50:30 wt% yielded similar to 100 nm average sized BSA NPs based on the SEM analysis. Although, water droplet size strongly depends on the water content, BSA nanoparticle size did not show a significant dependency on the water content. On the other hand, surfactant/IL weight ratio is more crucial for obtaining more uniformly size distributed albumin nanoparticles. A significant cellular uptake of BSA NPs prepared in IL based microemulsions with high cell viability showed the potential of this technique in preparation of albumin nanoparticles that can be used also in drug delivery studies. (C) 2019 Elsevier B.V. All rights reserved.Article Citation - WoS: 10Citation - Scopus: 12The Effect of Dopa Hydroxyl Groups on Wet Adhesion To Polystyrene Surface: an Experimental and Theoretical Study(Elsevier, 2020) Yıldız, Remziye; Özen, Sercan; Şahin, Hasan; Akdoğan, YaşarMussels wet adhesive performance has been arousing curiosity for a long time. It is found that 3,4-dihydroxyphenylalanine (DOPA) is responsible for adhesive properties of mussels. Despite a large body of research characterizing the interactions DOPA with hydrophilic surfaces, relatively few works have addressed the mechanism of interactions with hydrophobic surfaces. The benzene ring of DOPA is the main attributor to the adhesion on hydrophobic polystyrene (PS) surface. However, here we showed that two hydroxyl groups of catechol have also effects on wet adhesion. We studied wet adhesive properties of DOPA, tyrosine and phenylalanine functionalized PEG polymers, PEG-(N-Boc-L-DOPA)(4), PEG-(N-Boc-L-Tyrosine)(4), PEG-(N-Boc-L-Phenylalanine)(4), on spin labeled PS nanobeads (SL-PS) by electron paramagnetic resonance (EPR) spectroscopy. Surface coverage ratio of SL-PS upon additions of PEG-(N-Boc-L-DOPA)(4), PEG-(N-Boc-L-Tyrosine)(4) and PEG-(N-Boc-L-Phenylalanine)(4) showed that SL-PS was covered with 70%, 50% and 0%, respectively. This showed that spontaneous wet adhesion on PS increases with the number of amino acids hydroxyl groups. This is also supported with the density functional theory (DFT) energy calculations and ab-initio molecular dynamics (AIMD) simulations. In water, interactions between water molecules and hydroxyl groups on the catechol induce catechol adhesion via 7C-7C stacking between the catechol and double styrene rings which were already tilted out with water.Article Citation - WoS: 66Citation - Scopus: 71Signature of an Aggregation-Prone Conformation of Tau(Nature Publishing Group, 2017) Eschmann, Neil A.; Georgieva, Elka R.; Ganguly, Pritam; Borbat, Peter P.; Rappaport, Maxime D.; Akdoğan, Yaşar; Freed, Jack H.; Shea, Joan-Emma; Han, SongiThe self-assembly of the microtubule associated tau protein into fibrillar cell inclusions is linked to a number of devastating neurodegenerative disorders collectively known as tauopathies. The mechanism by which tau self-assembles into pathological entities is a matter of much debate, largely due to the lack of direct experimental insights into the earliest stages of aggregation. We present pulsed double electron-electron resonance measurements of two key fibril-forming regions of tau, PHF6 and PHF6∗, in transient as aggregation happens. By monitoring the end-to-end distance distribution of these segments as a function of aggregation time, we show that the PHF6 (∗) regions dramatically extend to distances commensurate with extended β-strand structures within the earliest stages of aggregation, well before fibril formation. Combined with simulations, our experiments show that the extended β-strand conformational state of PHF6 (∗) is readily populated under aggregating conditions, constituting a defining signature of aggregation-prone tau, and as such, a possible target for therapeutic interventions.Article Citation - WoS: 58Citation - Scopus: 86Intrinsic Surface-Drying Properties of Bioadhesive Proteins(John Wiley and Sons Inc., 2014) Akdoğan, Yaşar; Wei, Wei; Huang, Kuo-Ying; Kageyama, Yoshiyuki; Danner, Eric W.; Miller, Dusty R.; Martinez Rodriguez, Nadine R.; Waite, J. Herbert; Han, SongiSessile marine mussels must "dry" underwater surfaces before adhering to them. Synthetic adhesives have yet to overcome this fundamental challenge. Previous studies of bioinspired adhesion have largely been performed under applied compressive forces, but such studies are poor predictors of the ability of an adhesive to spontaneously penetrate surface hydration layers. In a force-free approach to measuring molecular-level interaction through surface-water diffusivity, different mussel foot proteins were found to have different abilities to evict hydration layers from surfaces - a necessary step for adsorption and adhesion. It was anticipated that DOPA would mediate dehydration owing to its efficacy in bioinspired wet adhesion. Instead, hydrophobic side chains were found to be a critical component for protein-surface intimacy. This direct measurement of interfacial water dynamics during force-free adsorptive interactions at solid surfaces offers guidance for the engineering of wet adhesives and coatings. Home and dry underwater: Repulsive hydration forces hinder wet adhesion in the absence of applied external forces. The direct measurement of hydration-water dynamics by NMR relaxometry at 10 GHz revealed that the most hydrophobic mussel adhesive protein, and not the most enriched with 3,4-dihydroxyphenylalanine, effectively dries the surface and overcomes repulsive hydration forces to adsorb spontaneously to surfaces in preparation for adhesion.