Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - Scopus: 6Lithium Extraction From Geothermal Brine Using Γ-Mno2: a Case Study for Tuzla Geothermal Power Plant(Elsevier Ltd, 2024) Toprak, S.; Yılmaz, Selahattin; Öncel, Ç.; Baba, Alper; Yılmaz, S.; Demir, Mustafa Muammer; Baba, A.; Koç, G.A.; Demir, M.M.Geothermal brines contain high concentrations of ions and form a source of various valuable elements. The isolation of the elements from their water systems is a great challenge when the gradual depletion of ores in mining is considered. Attempts have been made for a long time to isolate valuable elements from aqueous mixtures prepared in the laboratory. However, those studies might not reflect the complexity of natural systems and might yield results that deviate significantly from the performance in real field systems. In this study, sorption is used to extract lithium ions from a representative field, Tuzla Geothermal Power Plant (TGPP) Turkey, using a mini-pilot reactor introduced to the reinjection well of the plant. Electrolytic manganese dioxide (γ-MnO2), a relatively inexpensive material widely used as the cathode material in lithium-ion batteries, was employed as a sorbent material for lithium. The sorption/desorption performance of the novel γ-MnO2 was investigated under various conditions. Sorption is performed at 360K and 2 bars. The maximum sorption performance was obtained at 1 h in Tuzla GPP. The desorption experiments were performed in acidic solutions. The concentration of Li+ in the desorption solution was found to be 25 mg/L on average when 10 g of γ-MnO2 was dispersed into 30 mL of the acidic aqueous solution. The first desorption solution was used consecutively for collecting more Li+ ions through the desorption of fresh brine-treated powder samples (cumulative desorption). By repeating this process four times consecutively, 230 mg/L of Li+ was obtained in the desorption solution. Moreover, the reusability of the γ-MnO2 sorbent was examined. The sorbent powder showed almost 40% performance efficiency compared to virgin powder under the conditions employed in this study. The use of electrolytic γ-MnO2 sorbent for lithium adsorption was found to be a promising process for practical use in the separation of lithium from geothermal brines. © 2024Article Citation - WoS: 7Citation - Scopus: 7Epoxidation of Soybean Oil Over Titanium or Niobium Incorporated Sba-15 and Sulfated Lanthanum Titania Silicate Catalysts(Elsevier, 2022) Kalkandelen, Mustafa; Yılmaz, SelahattinMesoporous heterogeneous catalysts were synthesized to develop environmentally benign catalysts for soybean oil's (Glycine max) epoxidation. The investigated materials were sulfated lanthanum doped titania silica xerogel (SO4/La-TiO2-SiO2), and Ti and Nb incorporated SBA-15 with two different silica/metal molar ratios of 10 and 20. Soybean oil epoxidation reactions were performed in tert-butanol by utilizing H2O2 as oxidant at 75 °C for 6 h. Product analysis was carried out by H NMR, FTIR, and analytical methods. Nb-SBA-15 catalysts yielded better conversion than Ti-SBA-15 catalysts owing to their high acidity. However, epoxide selectivity was found low for both catalyst groups due to water in the medium that promoted side reactions. Tert-butanol and ethyl acetate were studied as solvents, but employing ethyl acetate in the reactions triggered catalysts aggregation and deposition on the reactor surface. Stability tests indicated the robustness of Ti and Nb against leaching, whereas sulfur leaching was noted with SO4/La-TiO2-SiO2 catalyst. The most active Nb-SBA-15 (10) catalyst was also applied in the epoxidation of soybean-derived fatty acid methyl esters (FAME). The results showed that small-sized FAME molecules did not enhance the reaction rate. Reusability tests indicated that Nb-SBA-15 (10) was active in epoxidation for at least three cycles.Article Citation - WoS: 7Citation - Scopus: 7Synthesis and Characterization of Single-Walled Carbon Nanotube: Cyto-Genotoxicity in Allium Cepa Root Tips and Molecular Docking Studies(Wiley, 2022) İnce Yardımcı, Atike; İstifli, Erman Salih; Açıkbaş, Yaser; Liman, Recep; Yağmurcukardeş, Nesli; Yılmaz, Selahattin; Ciğerci, İbrahim HakkıHerein, single-walled carbon nanotubes (SWCNTs) were synthesized by the thermal chemical vapor deposition (CVD) method, and characterized by scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX), transmission electron microscopy (TEM), Raman spectroscopy, dynamic light scattering (DLS), and thermo-gravimetric analysis (TGA). The results indicated that obtained nanotubes were SWCNTs with high crystallinity and their average diameter was 10.15 ± 3 nm. Allium cepa ana–telophase and comet assays on the root meristem were employed to evaluate the cytotoxic and genotoxic effects of SWCNTs by examining mitotic phases, mitotic index (MI), chromosomal aberrations (CAs), and DNA damage. A. cepa root tip cells were exposed to SWCNTs at concentrations of 12.5, 25, 50, and 100 μg/ml for 4 h. Distilled water and methyl methanesulfonate (MMS, 10 μg/ml) were used as the negative and positive control groups, respectively. It was observed that MIs decreased statistically significantly for all applied doses. Besides, CAs such as chromosome laggards, disturbed anaphase–telophase, stickiness and bridges and also DNA damage increased in the presence of SWCNTs in a concentration-dependent manner. In the molecular docking study, the SWCNT were found to be a strong DNA major groove binder showing an energetically very favorable binding free energy of −21.27 kcal/mol. Furthermore, the SWCNT interacted effectively with the nucleotides on both strands of DNA primarily via hydrophobic π and electrostatic interactions. As a result, cytotoxic and genotoxic effects of SWCNTs in A. cepa root meristematic cells which is a reliable system for assessment of nanoparticle toxicology were demonstrated in this study.Article Citation - WoS: 13Citation - Scopus: 14Detection of Crispr-Cas9 Mutations Using a Carbon Nanotube-Modified Electrochemical Genosensor(MDPI, 2021) Kıvrak, Ezgi; Pauzaite, Tekle; Copeland, Nikki A.; Hardy, John G.; Kara, Pınar; Fırlak, Melike; İnce Yardımcı, Atike; Yılmaz, Selahattin; Palaz, FahreddinThe CRISPR-Cas9 system has facilitated the genetic modification of various model organisms and cell lines. The outcomes of any CRISPR-Cas9 assay should be investigated to ensure/improve the precision of genome engineering. In this study, carbon nanotube-modified disposable pencil graphite electrodes (CNT/PGEs) were used to develop a label-free electrochemical nanogenosensor for the detection of point mutations generated in the genome by using the CRISPR-Cas9 system. Carbodiimide chemistry was used to immobilize the 5 '-aminohexyl-linked inosine-substituted probe on the surface of the sensor. After hybridization between the target sequence and probe at the sensor surface, guanine oxidation signals were monitored using differential pulse voltammetry (DPV). Optimization of the sensitivity of the nanogenoassay resulted in a lower detection limit of 213.7 nM. The nanogenosensor was highly specific for the detection of the precisely edited DNA sequence. This method allows for a rapid and easy investigation of the products of CRISPR-based gene editing and can be further developed to an array system for multiplex detection of different-gene editing outcomes.Article Citation - WoS: 11Citation - Scopus: 13Effect of Cnt Incorporation on Pan/Ppy Nanofibers Synthesized by Electrospinning Method(TÜBİTAK, 2020) İnce Yardımcı, Atike; Tanoğlu, Metin; Yılmaz, Selahattin; Selamet, YusufIn this study, carbon nanotubes (CNTs) added polyacrylonitrile/polypyrrole (PAN/PPy) electrospun nanofibers were produced. Average diameters of the nanofibers were measured as 268 and 153 nm for 10 and 25 wt% of PPy contents, respectively. A relatively higher strain to failure values (23.3%) were observed for the low PPy content. When as-grown CNTs (1 and 4 wt%) were added into the PAN/PPy blends, disordered nanofibers were observed to form within the microstructure. To improve the interfacial properties of CNTs/PAN/PPy composites, CNTs were functionalized with H2SO4/HNO3/HCl solution. The functionalized CNTs were well dispersed within the nanofibers and aligned along the direction of nanofibers. Therefore, beads formation on nanofibers decreased. The impedance of the nanofibers was found to decrease with the PPy content and CNT addition. These nanofibers had a great potential to be used as an electrochemical actuator or a tissue engineering scaffold.Article Citation - WoS: 34Citation - Scopus: 39Aptamer-Based Electrochemical Biosensing Strategy Toward Human Non-Small Cell Lung Cancer Using Polyacrylonitrile/Polypyrrole Nanofibers(Springer, 2020) Kıvrak, Ezgi; İnce Yardımcı, Atike; İlhan, Recep; Ballar Kırmızıbayrak, Petek; Yılmaz, Selahattin; Kara, PınarIn the present study, a sensitive electrochemical aptamer-based biosensing strategy for human non-small cell lung cancer (NSCLC) detection was proposed using nanofiber-modified disposable pencil graphite electrodes (PGEs). The composite nanofiber was comprised of polyacrylonitrile (PAN) and polypyrrole (PPy) polymers, and fabrication of the nanofibers was accomplished using electrospinning process onto PGEs. Development of the nanofibers was confirmed using scanning electron microscopy (SEM). The high-affinity 5 '-aminohexyl-linked aptamer was immobilized onto a PAN/PPy composite nanofiber-modified sensor surface via covalent bonding strategy. After incubation with NSCLC living cells (A549 cell line) at 37.5 degrees C, the recognition between aptamer and target cells was monitored by electrochemical impedance spectroscopy (EIS). The selectivity of the aptasensor was evaluated using nonspecific human cervical cancer cells (HeLa) and a nonspecific aptamer sequence. The proposed electrochemical aptasensor showed high sensitivity toward A549 cells with a detection limit of 1.2 x 10(3)cells/mL. The results indicate that our label-free electrochemical aptasensor has great potential in the design of aptasensors for the diagnostics of other types of cancer cells with broad detection capability in clinical analysis.Article Citation - WoS: 25Citation - Scopus: 27Osteogenic Differentiation of Mesenchymal Stem Cells on Random and Aligned Pan/Ppy Nanofibrous Scaffolds(SAGE Publications, 2019) Selamet, Yusuf; İnce Yardımcı, Atike; Baskan, Öznur; Yılmaz, Selahattin; Meşe, Gülistan; Özçivici, EnginThe aim of this study was to develop random and aligned polyacrilonitrile (PAN)/polypyrrole (PPy) nanofibrous scaffolds by electrospinning technique for osteogenic differentiation of mesenchymal stem cells. Nanofibers were fabricated successfully as straight, smooth, and free from bead formation. The average diameter of random and aligned nanofibers was 268(+/- 49) nm and 225(+/- 72) nm, respectively. Alignment process increased the tensile strength of nanofibers 3.9-fold, while the tensile strain of nanofibers decreased by 78%. PAN/PPy nanofibers were hydrophilic with the contact angle value of about 32 degrees and alignment did not affect the contact angle value. Random and aligned PAN/PPy nanofibers were investigated as a scaffold material for osteogenic differentiation of D1 ORL UVA mouse bone marrow mesenchymal stem cells. Cells were able to attach and grow on nanofibers confirmed by cell viability results. Stem cells that were cultured with osteogenic induction were able to mineralize on electrospun nanofibers based on alizarin red and Von Kossa dye staining. For aligned PPy nanofibers, mineralization occurred in the fiber alignment direction. Consequently, PAN/PPy nanofibrous mats in both random and aligned forms would be potential candidates for bone tissue engineering.Article Citation - WoS: 17Citation - Scopus: 19Heavy Naphtha Upgrading by Catalytic Reforming Over Novel Bi-Functional Zeolite Catalyst(Springer, 2018) Ahmedzeki, Nada S.; Al-Tabbakh, Ban A.; Antwan, Maher B.; Yılmaz, SelahattinNaphtha catalytic reforming process using bimetallic platinum and titanium loaded on nano synthesized HY zeolite was investigated for the product octane number enhancement. The activity of five samples of the prepared catalyst with different bimetallic loading of 0.13, 0.25 wt% Pt and 0.75, 1, 2.2 wt% Ti were investigated for Iraqi heavy naphtha catalytic reforming at the temperature range of 490, 500 and 510 degrees C and pressure of 10 bar in a packed bed pilot plant reactor. The best result of the research octane number was 84 for reformate product using the sample of 0.13% Pt-0.75% Ti%/HY zeolite at temperature 510 degrees C and 10 bar achieving 47% increase. All samples of the prepared catalyst showed a good stability during the operation at severe conditions and the maximum carbon content was about 9% due to the deposition of coke precursor on the catalyst surface. The reformate yield was investigated for all catalyst samples under 10 and 20 bars and the same range of temperature and ranged from 89 to 94%. These results are encouraging for future possible replacement of the conventional catalyst by the local synthetic zeolite. Octane number was correlated on the basis of constituent's boiling points. The maximum absolute error between the experimental and predicted octane number was about 3 and 5% using 10 and 20 bar respectively.Article Effective Synthesis of Cetyl Palmitate Over Co-Precipitated Wo3-Zro2 Catalysts(Springer Verlag, 2018) Mutlu, Vahide N.; Yılmaz, SelahattinThis study is focused on the development of solid acid catalysts for the synthesis of long chain fatty acids. A series of WO3-ZrO2 catalysts were prepared by co-precipitation method and tested in the synthesis of cetyl palmitate. The effect of WO3 loading (10, 15, and 20 wt% WO3) and calcination temperature (700 and 800 degrees C) on the catalyst properties and activity was investigated. XRD and Raman analysis confirmed that WO3 loading stabilized the tetragonal zirconia phase. Higher calcination temperature enhanced the acidities of the catalysts. WO3-ZrO2 catalysts were found to be very efficient for the synthesis of cetyl palmitate with high selectivity. These catalysts were tested for different reaction temperatures (135 and 162 degrees C), feed composition and catalyst amounts. The highest cetyl palmitate yield (98.4%) was obtained over the catalyst calcined at 800 degrees C with 15 wt% WO3, which had the highest total acidity. The catalysts preserved their activities up to three reuse.Article Citation - WoS: 18Citation - Scopus: 17Cnt Incorporated Polyacrilonitrile/Polypyrrole Nanofibers as Keratinocytes Scaffold(Trans Tech Publications, 2019) İnce Yardımcı, Atike; Aypek, Hande; Öztürk, Özgür; Yılmaz, Selahattin; Özçivici, Engin; Meşe, Gülistan; Selamet, YusufPolypyrrole (PPy) is an attractive scaffold material for tissue engineering with its non-toxic and electrically conductive properties. There has not been enough information about PPy usage in skin tissue engineering. The aim of this study is to investigate biocompatibility of polyacrilonitrile (PAN)/PPy nanofibrous scaffold for human keratinocytes. PAN/PPy bicomponent nanofibers were prepared by electrospinning, in various PPy concentrations and with carbon nanotube (CNT) incorporation. The average diameter of electrospun nanofibers decreased with increasing PPy concentration. Further, agglomerated CNTs caused beads and disordered parts on the surface of nanofibers. Biocompatibility of these PAN/PPy and PAN/PPy/CNT scaffolds were analyzed in vitro. Both scaffolds provided adhesion and proliferation of keratinocytes. Nanofiber diameter did not significantly influence the morphology of cells. However, with increasing number of cells, cells stayed among nanofibers and this affected their shape and size. In this study, we demonstrated that PAN/PPy and PAN/PPy/CNT scaffolds enabled the growth of keratinocytes, showing their biocompatibility.