Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
Browse
7 results
Search Results
Article Citation - WoS: 2Citation - Scopus: 2Temporal Electroencephalography Features Unveiled Via Olfactory Stimulus as Biomarkers for Mild Alzheimer's Disease(Elsevier Sci Ltd, 2025) Olcay, Bilal Orkan; Pehlivan, Murat; Karacali, BilgeAim: Our primary aim is to capture and use the timings of the characteristic brain responses to olfactory stimulation for mild Alzheimer's disease diagnosis purposes. Proposed method: Our method identifies the timings of short-lived signal segments where characteristic distances between pre- and post-stimulus relative spectral energies are attained for each EEG channel and frequency band. These timings and timing-derived features were subsequently used in a leave-one-subject-out cross-validation scenario to assess the diagnostic performance of our framework. We evaluated seven distinct statistical distance measures to determine the most effective one for characterizing the neurological conditions of the subjects. Results: The average cross-validation performance shows that our framework achieved 87.50% diagnosis performance. The frequently used features were mainly derived from the delta and alpha activity of the prefrontal region (Fp1) and the beta activity of the parietal region (Pz), which agree with the current findings of olfaction biophysics. Comparison with existing methods: We compared the performance of our method with that of four existing methods in the literature. Our method outperformed these four methods. Moreover, our method elicited the highest accuracy when the clinical olfactory score (UPSIT) was included as a feature. Conclusions: Our analysis framework reveals a significant alteration of the timing organization of the brain that emerged upon olfactory stimulation in Alzheimer's patients. The timings of characteristic response and the features calculated via these timings contribute to Alzheimer's disease diagnosis performance remarkably. The perspective proposed here may facilitate early diagnosis, thereby facilitating the exploration of novel therapeutic and treatment strategies.Book Part Citation - Scopus: 1Arcobacter(Elsevier, 2023) Ceylan,Ç.Arcobacter is a gram-negative, microaerophilic, water- and food-borne emerging pathogen with a spiral shape. The bacterium appears to have metabolic and genomic plasticity properties and is found to be ubiquitously distributed and densely populated in environmental waters. Although not studied in detail this genus presents a potential problem as a gastrointestinal and opportunistic pathogen with inherent difficulties in classification. However, the species represents a wide genomic and metabolic plasticity that could be used in the production of industrially important moieties and for environmental protection purposes. © 2023 Elsevier Inc. All rights reserved.Article Citation - WoS: 6Citation - Scopus: 10Using Chemosensory-Induced Eeg Signals To Identify Patients With <i>de Novo</I> Parkinson's Disease(Elsevier Sci Ltd, 2024) Olcay, Orkan; Onay, Fatih; Ozturk, Guliz Akin; Oniz, Adile; Ozgoren, Murat; Hummel, Thomas; Guducu, CagdasObjective: Parkinson's disease (PD) patients generally exhibit an olfactory loss. Hence, psychophysical or electrophysiological tests are used for diagnosis. However, these tests are susceptible to the subjects' behavioral response bias and require advanced techniques for an accurate analysis. Proposed Approach: Using well-known feature extraction methods, we characterized chemosensory-induced EEG responses of the participants to classify whether they have PD. The classification was performed for different time intervals after chemosensory stimulation to see which temporal segment better separates healthy controls and subjects with de novo PD. Results: The performances show that entropy and connectivity features discriminate effectively PD and HC participants when olfactory-induced EEG signals were used. For these methods, discrimination is over 80% for segments 100-700 and 200-800 milliseconds after stimulus onset. Comparison with Existing Methods: We compared the performance of our framework with linear predictive coding, bispectrum, wavelet entropy-based methods, and TDI score-based classification. While the entropy- and connectivity-based methods elicited the highest classification performances for olfactory stimuli, the linear predictive coding-based method elicited slightly higher performance than our framework when the trigeminal stimuli were used. Conclusion: This is one of the first studies that use chemosensory-induced EEG signals along with different feature extraction methods to classify healthy subjects and subjects with de novo PD. Our results show that entropy and functional connectivity methods unravel the chemosensory-induced neural dynamics encapsulating critical information about the subjects' olfactory performance. Furthermore, time- and frequency-resolved feature analysis is beneficial for capturing disease-affected neural patterns.Article Citation - WoS: 2Citation - Scopus: 4Identification of Turkish Extra Virgin Olive Oils Produced in Different Regions by Using Nmr (h-1 and C-13) and Irms (c-13/C-12)(Wiley, 2023) Sevim, Didar; Köseoğlu, Oya; Ertaş, Hasan; Özdemir, Durmuş; Ulaş, Mehmet; Günnaz, Salih; Çelenk, Veysel UmutIsotope ratio mass spectroscopy (IRMS) and nuclear magnetic resonance (NMR) spectroscopy techniques are two of the analytical methods that are used to characterize food products. The aim of this study is to classify extra virgin olive oil (EVOO) samples collected from different regions of Turkey based on H-1 and C-13 NMR spectra along with IRMS d(13)C carbon isotope ratio data by using chemometrics multivariate data analysis methods. A total of 175 EVOO samples were analyzed in 2014/15 and 2015/16 harvest seasons. Multivariate classification and clustering models were used to identify geographical and botanical origins of the EVOOs. IRMS results showed that there was no significant difference in terms of d(13)C values between the years in terms of harvest year (p > 0.05), only extraction phase and variety were statistically significant factors (p < 0.05). The interactions of the factors showed that the harvest year x variety interaction is important. The outcomes of this research clearly indicated that considering the partial least squares discriminant analysis result with NMR spectra, the percent success of the model in the South Marmara, North Aegean, and South Aegean region samples were 95%, 95.7%, and 96.4% in the model set, respectively. The results showed that by using classification and clustering models, geographic marking and labeling of these oils can be carried out regardless of differences in year and production systems (2 and 3 phase extraction system) according the NMR analysis.Conference Object Citation - Scopus: 1A Novel Feature To Predict Buggy Changes in a Software System(Springer, 2022) Yılmaz, Rahime; Nalçakan, Yağız; Haktanır, ElifResearchers have successfully implemented machine learning classifiers to predict bugs in a change file for years. Change classification focuses on determining if a new software change is clean or buggy. In the literature, several bug prediction methods at change level have been proposed to improve software reliability. This paper proposes a model for classification-based bug prediction model. Four supervised machine learning classifiers (Support Vector Machine, Decision Tree, Random Forrest, and Naive Bayes) are applied to predict the bugs in software changes, and performance of these four classifiers are characterized. We considered a public dataset and downloaded the corresponding source code and its metrics. Thereafter, we produced new software metrics by analyzing source code at class level and unified these metrics with the existing set. We obtained new dataset to apply machine learning algorithms and compared the bug prediction accuracy of the newly defined metrics. Results showed that our merged dataset is practical for bug prediction based experiments. © 2022, The Author(s), under exclusive license to Springer Nature Switzerland AG.Article Citation - WoS: 3Citation - Scopus: 3Automated Labeling of Cancer Textures in Larynx Histopathology Slides Using Quasi-Supervised Learning(Science Printers and Publishers Inc., 2014) Önder, Devrim; Sarıoğlu, Sülen; Karaçalı, BilgeOBJECTIVE: To evaluate the performance of a quasisupervised statistical learning algorithm, operating on datasets having normal and neoplastic tissues, to identify larynx squamous cell carcinomas. Furthermore, cancer texture separability measures against normal tissues are to be developed and compared either for colorectal or larynx tissues. STUDY DESIGN: Light microscopic digital images from histopathological sections were obtained from laryngectomy materials including squamous cell carcinoma and nonneoplastic regions. The texture features were calculated by using co-occurrence matrices and local histograms. The texture features were input to the quasisupervised learning algorithm. RESULTS: Larynx regions containing squamous cell carcinomas were accurately identified, having false and true positive rates up to 21% and 87%, respectively. CONCLUSION: Larynx squamous cell carcinoma versus normal tissue texture separability measures were higher than colorectal adenocarcinoma versus normal textures for the colorectal database. Furthermore, the resultant labeling performances for all larynx datasets are higher than or equal to that of colorectal datasets. The results in larynx datasets, in comparison with the former colorectal study, suggested that quasi-supervised texture classification is to be a helpful method in histopathological image classification and analysis.Article Citation - WoS: 13Citation - Scopus: 13Multi-Scale Benchtop 1h Nmr Spectroscopy for Milk Analysis(Academic Press, 2021) Söyler, Alper; Çıkrıkçı, Sevil; Çavdaroğlu, Çağrı; Bouillaud, Dylan; Farjon, Jonathan; Giraudeau, Patrick; Öztop, Mecit H.Benchtop NMR systems offers various advantages such as being easy to use, not requiring constant maintenance and being available at affordable prices. In this study, multiple aspects of benchtop NMR spectroscopy were explored to analyze milk in an industrial context, either regarding the quality of production or regarding the differentiation of the final product. The first part focuses on the production conditions of lactose hydrolysis in milk and quantitative online NMR spectroscopy was adapted to follow lactose hydrolysis in milk in continuous flow mode. The second part focuses on differentiating milk samples having different properties. 36 milk samples from France and Turkey were analysed and glycerol, fat and sugar contents were measured from the NMR spectra. Combination of spectroscopic data with a proposed Artificial Neural Network model enabled to classify milk of different origins and different properties. This study shows that benchtop NMR spectroscopy is a versatile non-destructive control method that can help controlling milk quality both during and after production. © 2020 Elsevier Ltd