Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 16Citation - Scopus: 18Cytotoxic and Cytostatic Side Effects of Chitosan Nanoparticles as a Non-Viral Gene Carrier(Elsevier Ltd., 2016) Bor, Gizem; Mytych, Jennifer; Zebrowski, Jacek; Wnuk, Maciej; Şanlı Mohamed, GülşahAlthough chitosan nanoparticles (CNs) became a promising tool for several biological and medical applications owing to their inherent biocompatibility and biodegradability features, studies regarding their effects on cytotoxic and cytostatic properties still remain insufficient. Therefore, in the present study, we decided to perform comprehensive analysis of the interactions between CNs–pKindling-Red-Mito (pDNA) and different cell line models derived from blood system and human solid tissues cancers. The resulting CNs-pDNA was investigated in terms of their cellular uptake, transfection efficiency, and physico-chemical, cytotoxic and cytostatic properties. The nanoparticles showed high encapsulation efficiency and physical stability for various formulations even after two days time period. Moreover, high gene expression levels were observed after 96 h of transfection. CNs-pDNA treatment, despite the absence of oxidative stress induction, caused cell cycle arrest in G0/G1 phase and as a consequence led to premature senescence which turned out to be both p21-dependent and p21-independent. Also, observed DNMT2 upregulation may suggest the activation of different pathways protecting from the results of CNs-mediated stress. In conclusion, treatment of different cell lines with CNs-pDNA showed that their biocompatibility was limited and the effects were cell type-dependent.Article Citation - WoS: 47Citation - Scopus: 49Simultaneous Identification of Spectral Properties and Sizes of Multiple Particles in Solution With Subnanometer Resolution(John Wiley and Sons Inc., 2016) Karabudak, Engin; Brookes, Emre; Lesnyak, Vladimir; Gaponik, Nikolai; Eychmüller, Alexander; Walter, Johannes; Segets, Doris; Peukert, Wolfgang; Wohlleben, Wendel; Demeler, Borries; Cölfen, HelmutWe report an unsurpassed solution characterization technique based on analytical ultracentrifugation, which demonstrates exceptional potential for resolving particle sizes in solution with sub-nm resolution. We achieve this improvement in resolution by simultaneously measuring UV/Vis spectra while hydrodynamically separating individual components in the mixture. By equipping an analytical ultracentrifuge with a novel multi-wavelength detector, we are adding a new spectral discovery dimension to traditional hydrodynamic characterization, and amplify the information obtained by orders of magnitude. We demonstrate the power of this technique by characterizing unpurified CdTe nanoparticle samples, avoiding tedious and often impossible purification and fractionation of nanoparticles into apparently monodisperse fractions. With this approach, we have for the first time identified the pure spectral properties and band-gap positions of discrete species present in the CdTe mixture.Article Citation - WoS: 15Citation - Scopus: 21Preparation, Characterization and Optimization of Chitosan Nanoparticles as Carrier for Immobilization of Thermophilic Recombinant Esterase(Taylor and Francis Ltd., 2011) İlgü, Hüseyin; Turan, Taylan; Şanlı Mohamed, GülşahImmobilization of biologically important molecules on myriad nano-sized materials has attracted great attention. Through this study, thermophilic esterase enzyme was obtained using recombinant DNA technology and purified applying one-step His-Select HF nickel affinity gel. The synthesis of chitosan was achieved from chitin by deacetylation process and degree of deacetylation was calculated as 89% by elemental analysis. Chitosan nanoparticles were prepared based on the ionic gelation of chitosan with tripolyphosphate anions. The physicochemical properties of the chitosan and chitosan nanoparticles were determined by several methods including SEM (Scanning Electron Microscopy), FT-IR (Fourier Transform Infrared Spectroscopy) and DLS (Dynamic Light Scattering). The morphology of chitosan nanoparticles was spherical and the nanospheres' average diameter was 75.3 nm. The purified recombinant esterase was immobilized efficiently by physical adsorption onto chitosan nanoparticles and effects of various immobilization conditions were investigated in details to develope highly cost-effective esterase as a biocatalyst to be utilized in biotechnological purposes. The optimal conditions of immobilization were determined as follows; 1.0 mg/mL of recombinant esterase was immobilized on 1.5 mg chitosan nanoparticles for 30 min at 60C, pH 7.0 under 100 rpm stirring speed. Under optimized conditions, immobilized recombinant esterase activity yield was 88.5%. The physicochemical characterization of enzyme immobilized chitosan nanoparticles was analyzed by SEM, FT-IR and AFM (Atomic Force Microscopy).Article Citation - WoS: 211Citation - Scopus: 246A Radiotracer Study of the Adsorption Behavior of Aqueous Ba2+ Ions on Nanoparticles of Zero-Valent Iron(Elsevier Ltd., 2007) Çelebi, O.; Üzüm, Çağrı; Shahwan, Talal.; Erten, Hasan NRecently, iron nanoparticles are increasingly being tested as adsorbents for various types of organic and inorganic pollutants. In this study, nanoparticles of zero-valent iron (NZVI) synthesized under atmospheric conditions were employed for the removal of Ba2+ ions in a concentration range 10-3 to 10-6 M. Throughout the study, 133Ba was used as a tracer to study the effects of time, concentration, and temperature. The obtained data was analyzed using various kinetic models and adsorption isotherms. Pseudo-second-order kinetics and Dubinin-Radushkevich isotherm model provided the best correlation with the obtained data. Observed thermodynamic parameters showed that the process is exothermic and hence enthalpy-driven.Article Citation - WoS: 2Citation - Scopus: 2Composites of Reactive Silica Nanoparticles and Poly(glycidyl Methacrylate) With Linear and Crosslinked Chains by in Situ Bulk Polymerization(Taylor and Francis Ltd., 2010) Demir, Mustafa Muammer; Altın, Burcu; Özçelik, SerdarComposites of poly(glycidyl methacrylate) (PGMA) and L-lysine-coated silica nanoparticles with varying contents were prepared by in situ bulk polymerization using benzoyl peroxide (BPO) as free radical initiator. Silica nanoparticles covered by L-lysine molecules were synthesized using emulsion method. Dynamic light scattering measurements confirmed that the particles are highly monodisperse with the diameter of 10 nm and free of aggregates in the monomer (glycidyl methacrylate, GMA). Upon polymerization of the homogeneous particle/monomer dispersion, aggregates of individual silica nanoparticles are observed by tapping mode atomic force microscope (AFM). Amine and/or carboxylic acid sites on particle surface covalently react with the oxirane groups of the polymer backbone. The aggregation was substantially suppressed by using a difunctional comonomer divinyl benzene (DVB) in polymerization. A three-dimensional polymer network, P(GMA-DVB), forms throughout the system. This structure leads to significant progress in particle dispersion, therefore in physical properties of the resulting composite. We demonstrated that the composites prepared by crosslinked chains are thermally more stable and mechanically stiffer than those prepared by linear ones.Article Citation - WoS: 15Citation - Scopus: 15Controlling Spontaneous Emission of Cdse Nanoparticles Dispersed in Electrospun Fibers of Polycarbonate Urethane(American Chemical Society, 2009) Demir, Mustafa Muammer; Soysal, Duygu; Ünlü, Caner; Kuş, Mahmut; Özçelik, SerdarLuminescent fibrous composite films consisting of submicrometer diameter fibers were prepared by electrospinning of segmented polycarbonate urethane (PCU) in dimethyl formamide and tri-n-octylphosphine oxide (TOPO)-capped CdSe nanocrystals (5 nm in diameter) in toluene. Using a pair of conductive electrodes separated with an air gap, we successfully produced randomly deposited and uniaxially aligned electrospun fibers. The surface structure of the electrospun fibers was studied using atomic force microscopy (AFM) and was compared to the corresponding film prepared by casting. In cast film, tapping mode AFM imaging suggests that hard urethane segments organize into rodlike morphology dispersed in soft polycarbonate. When PCU/ CdSe dispersions were subjected to electrospinning, copolymer domains were forced to arrange into lamella along the fiber axis due to elongational flow and high stretching. Molecular orientation in the domains of the composite fibers was confirmed by polarized infrared spectroscopy. We demonstrated that formation of the oriented domains by electrospinning develops a hierarchical structure, which consequently modifies spectral properties because new multiple sharp lines appeared in the photoluminescence (PL) spectra of the fibers. In contrast to randomly deposited fibers, the PL intensity of uniaxially aligned fibers was found to be angle dependent. We propose that the elongated internal structure within the fibers controls the spontaneous emission of CdSe nanoparticles dispersed throughout the electrospun mat. A discussion on the nature of the controlled spontaneous emission is provided.Article Citation - WoS: 119Citation - Scopus: 151Batch Removal of Aqueous Cu2+ Ions Using Nanoparticles of Zero-Valent Iron: a Study of the Capacity and Mechanism of Uptake(American Chemical Society, 2008) Karabelli, Duygu; Üzüm, Çağrı; Shahwan, Talal; Eroğlu, Ahmet Emin; Scott, Tom B.; Hallam, Keith R.; Lieberwirth, IngoIn this study, nZVI prepared by borohydride reduction was applied for the removal of Cu2+ ions under a variety of experimental conditions. The uptake experiments investigated the effects of initial concentration, contact time, pH, and repetitive loading on the extent of retardation of Cu2+ ions. Within the applied conditions, the sorbent demonstrated fast uptake kinetics and outstanding fixation abilities up to an initial Cu2+ concentration of 200.0 mg/L. Partitioning of Cu2+ ions between liquid and solid phases demonstrated an isotherm of L-type. Within the studied conditions, the capacity of uptake was found to be 250 mg of Cu2+ per g of nZVI. According to X-ray photoelectron spectroscopy (XPS) and X-ray diffraction (XRD) results, Cu2+ ions were sorbed primarily via a redox mechanism that resulted in the formation of Cu2O and Cu0. The contact of iron nanoparticles with aqueous media caused extensive formation of iron oxide. However, the material did not completely lose its removal capacity and was repeatedly applied at low concentrations for further uptake trials.Article Citation - WoS: 11Citation - Scopus: 11Effect of Alkali Metal Hydroxides on the Morphological Development and Optical Properties of Ceria Nanocubes Under Hydrothermal Conditions(American Scientific Publishers, 2011) Kepenekçi, Özlem; Eanes, Mehtap; Demir, Mustafa MustafaNanocrystalline cerium(IV) oxide (CeO2, ceriaceria) particles were produced via the hydrothermal treatment of cerium nitrate hexahydrate with various alkali metal hydroxides (MOH: M = Li, Na, K). Experimental conditions such as [MOH], reaction temperature, and reaction time were studied. Particle morphology as well as size of crystallites was precisely controlled by choice of experimental conditions. While rod-shaped particles were obtained at 120 C, well-defined nanocubes were formed at higher temperatures regardless of the choice of MOH. Examination of particle growth kinetics, in the final stages of crystallization, showed that particle growth rate is controlled by two different mechanisms. Grain boundary diffusion controls the particle growth in the presence of NaOH with an activation energy of 113.8 kj/mol and surface diffusion for LiOH ad KOH with the activation energy of 43.0–150.9 kj/mol, respectively. In addition, the particles exhibit strong violet and blue emissions at 400 nm and 370 nm. The former emission originates from excitation of a wide band gap of CeO2. The latter one is attributed to the trivalency of the cerium ion and appears to be sensitive to all the experimental conditions studied. Both extending reaction time and increasing temperature reduce the intensity of the 370 nm emission and increase the intensity of the 400 nm emission.