Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 2Citation - Scopus: 2Sustainable Processing of Brewers Spent Grain for Plant-Based Yogurt Alternatives(Mdpi, 2025) Blaszak, Blazej; Demir, Irem Emine; Dlugosz, Anna; Kolaczyk, Pawel; Bak, Malgorzata; Gozdecka, Grazyna; Szulc, JoannaDuring the preparation of beer wort, significant amounts of waste raw materials, such as brewers' spent grain (BSG), are generated. In line with the zero-waste approach, a processing technology for BSG was developed to valorize this by-product. The developed method involves obtaining a BSG extract (plant-based milk), followed by filtration to remove insoluble residues and subsequent fermentation to produce vegan BSG-based yogurt-like products, with and without the addition of sucrose, as well as pectin, guar gum, and konjac gum as stabilizers. The samples were analyzed for pH, moisture and protein content, water activity (Aw), color, viscosity, and syneresis, and were also subjected to an organoleptic evaluation. Fermentation with starter cultures yielded BSG-based yogurt-like products with an optimal pH (similar to 4.0), which, combined with Aw values below 0.95, ensures microbiological safety by inhibiting the growth of pathogenic and spoilage microorganisms. Due to phase separation, the use of stabilizers was necessary to achieve a yogurt-like texture. Their application also contributed to a reduction in syneresis-sometimes even preventing its occurrence-and led to an increase in viscosity, which ranged from 0.162 to 0.463 Pa.s, depending on the stabilizer used. The moisture content of fermented BSG extracts ranged from 88.2% to 91.7%. All samples showed similar protein content, approximately 50% on a dry matter basis. Furthermore, organoleptic assessment (5-point scale) revealed that sensory characteristics varied depending on the stabilizer and sugar used. The yogurt-like variant formulated with 0.5% pectin and 1% sucrose received the highest acceptance score (4.0), indicating good sensory quality .Article Citation - WoS: 1Citation - Scopus: 1Improved Isolation of Ultra-High Genomic Dna Suitable for Third-Generation Sequencing(Mdpi, 2025) Ova, Ayse Oyku; Joffre, Enrique; Shafagh, Reza Zandi; Assuncao, Mariana F. G.; Sidorov, Roman Y.; Santos, Lilia M. A.; Romling, UteAlthough a variety of protocols to isolate high-molecular-weight genomic DNA exist, the isolation and preservation of ultra-high-molecular-weight genomic DNA of sufficient quality and length for error-free third-generation sequencing remains challenging. Inspired by the isolation of high-molecular-weight DNA in agarose plugs suitable to be separated by pulsed-field gel electrophoresis, we report the construction of an incubation chamber for DNA isolation. The chamber is flanked by semi-permeable polycarbonate membranes of variable pore size for the selective diffusion of compounds and components, which allows efficient cell lysis and the subsequent isolation of ultra-high-molecular-weight genomic DNA without shearing. The designed experimental approach is simple, but effective in isolating high-quality ultra-long genomic DNA that is suitable for third-generation sequencing by Oxford Nanopore Technology from challenging bacterial samples. We envisage that genomic DNA isolation using the incubation chamber, or variations thereof, will facilitate the regular sequencing of megabasepair-long DNA fragments, with a multitude of applications in microbiology, immunology, oncology, paleontology and forensic science.Article Impact of Cooling Strategies and Cell Housing Materials on Lithium-Ion Battery Thermal Management Performance(Mdpi, 2025) Aydin, Sevgi; Çetkin, Erdal; Samancioglu, Umut Ege; Savci, Ismail Hakki; Yigit, Kadri Suleyman; Cetkin, ErdalThe transition to renewable energy sources from fossil fuels requires that the harvested energy be stored because of the intermittent nature of renewable sources. Thus, lithium-ion batteries have become a widely utilized power source in both daily life and industrial applications due to their high power output and long lifetime. In order to ensure the safe operation of these batteries at their desired power and capacities, it is crucial to implement a thermal management system (TMS) that effectively controls battery temperature. In this study, the thermal performance of a 1S14P lithium-ion battery module composed of cylindrical 18650 cells was compared for distinct cases of natural convection (no cooling), forced air convection, and phase change material (PCM) cooling. During the tests, the greatest temperatures were reached at a 2C discharge rate; the maximum module temperature reached was 55.4 degrees C under the natural convection condition, whereas forced air convection and PCM cooling reduced the maximum module temperature to 46.1 degrees C and 52.3 degrees C, respectively. In addition, contacting the battery module with an aluminum mass without using an active cooling element reduced the temperature to 53.4 degrees C. The polyamide battery housing (holder) used in the module limited the cooling performance. Thus, simulations on alternative materials document how the cooling efficiency can be increased.Review Citation - WoS: 13Citation - Scopus: 18Review of Cell Level Battery (calendar and Cycling) Aging Models: Electric Vehicles(Mdpi, 2024) Yarimca, Gulsah; Cetkin, ErdalElectrochemical battery cells have been a focus of attention due to their numerous advantages in distinct applications recently, such as electric vehicles. A limiting factor for adaptation by the industry is related to the aging of batteries over time. Characteristics of battery aging vary depending on many factors such as battery type, electrochemical reactions, and operation conditions. Aging could be considered in two sections according to its type: calendar and cycling. We examine the stress factors affecting these two types of aging in detail under subheadings and review the battery aging literature with a comprehensive approach. This article presents a review of empirical and semi-empirical modeling techniques and aging studies, focusing on the trends observed between different studies and highlighting the limitations and challenges of the various models.Review A Qualitative Survey on Community Detection Attack Algorithms(Mdpi, 2024) Tekin, Leyla; Bostanoglu, Belgin ErgencCommunity detection enables the discovery of more connected segments of complex networks. This capability is essential for effective network analysis. But, it raises a growing concern about the disclosure of user privacy since sensitive information may be over-mined by community detection algorithms. To address this issue, the problem of community detection attacks has emerged to subtly perturb the network structure so that the performance of community detection algorithms deteriorates. Three scales of this problem have been identified in the literature to achieve different levels of concealment, such as target node, target community, or global attack. A broad range of community detection attack algorithms has been proposed, utilizing various approaches to tackle the distinct requirements associated with each attack scale. However, existing surveys of the field usually concentrate on studies focusing on target community attacks. To be self-contained, this survey starts with an overview of community detection algorithms used on the other side, along with the performance measures employed to evaluate the effectiveness of the community detection attacks. The core of the survey is a systematic analysis of the algorithms proposed across all three scales of community detection attacks to provide a comprehensive overview. The survey wraps up with a detailed discussion related to the research opportunities of the field. Overall, the main objective of the survey is to provide a starting and diving point for scientists.Article Citation - WoS: 6Citation - Scopus: 6Comparison of Linear and Nonlinear Twist Extrusion Processes With Crystal Plasticity Finite Element Analysis(Mdpi, 2024) Simsek, Ulke; Davut, Kemal; Miyamoto, Hiroyuki; Yalcinkaya, TuncayThe mechanical characteristics of polycrystalline metallic materials are influenced significantly by various microstructural parameters, one of which is the grain size. Specifically, the strength and the toughness of polycrystalline metals exhibit enhancement as the grain size is reduced. Applying severe plastic deformations (SPDs) has a noticeable result in obtaining metallic materials with ultrafine-grained (UFG) microstructure. SPD, executed through conventional shaping methods like extrusion, plays a pivotal role in the evolution of the texture, which is closely related to the plastic behavior and ductility. A number of SPD processes have been developed to generate ultrafine-grained materials, each having a different shear deformation mechanism. Among these methods, linear twist extrusion (LTE) presents a non-uniform and non-monotonic form of severe plastic deformation, leading to significant shifts in the microstructure. Prior research demonstrates the capability of the LTE process to yield consistent, weak textures in pre-textured copper. However, limitations in production efficiency and the uneven distribution of grain refinement have curbed the widespread use of LTE in industrial settings. This has facilitated the development of an improved novel method, that surpasses the traditional approach, known as the nonlinear twist extrusion procedure (NLTE). The NLTE method innovatively adjusts the channel design of the mold within the twist section to mitigate strain reversal and the rotational movement of the workpiece, both of which have been identified as shortcomings of twist extrusion. Accurate anticipation of texture changes in SPD processes is essential for mold design and process parameter optimization. The performance of the proposed extrusion technique should still be studied. In this context, here, a single crystal (SC) of copper in billet form, passing through both LTE and NLTE, is analyzed, employing a rate-dependent crystal plasticity finite element (CPFE) framework. CPFE simulations were performed for both LTE and NLTE of SC copper specimens having <100> or <111> directions parallel to the extrusion direction initially. The texture evolution as well as the cross-sectional distribution of the stress and strain is studied in detail, and the performance of both processes is compared.Article Citation - WoS: 3Citation - Scopus: 3Comprehensive Analysis of Lutein and Loroxanthin in <i>scenedesmus Obliquus</I>: From Quantification To Isolation(Mdpi, 2024) Erdogan, Aysegul; Karatas, Ayca Busra; Demir, Dilan; Demirel, Zeliha; Akturk, Merve; Copur, Oyku; Conk-Dalay, MeltemCarotenoids are hydrophobic pigments produced exclusively by plants, fungi, and specific microbes. Microalgae are well suited for the production of valuable carotenoids due to their rapid growth, efficient isoprenoid production pathway, and ability to store these compounds within their cells. The possible markets for bio-products range from feed additives in aquaculture and agriculture to pharmaceutical uses. The production of carotenoids in microalgae is affected by several environmental conditions, which can be utilized to enhance productivity. The current study focused on optimizing the extraction parameters (time, temperature, and extraction number) to maximize the yield of carotenoids. Additionally, the impact of various nitrogen sources (ammonia, nitrate, nitrite, and urea) on the production of lutein and loroxanthin in Scenedesmus obliquus was examined. To isolate the carotenoids, 0.20 g of biomass was added to 0.20 g of CaCO3 and 10.0 mL of ethanol solution containing 0.01% (w/v) pyrogallol. Subsequently, the extraction was performed using an ultrasonic bath for a duration of 10 min at a temperature of 30 degrees C. This was followed by a four-hour saponification process using a 10% methanolic KOH solution. The concentration of lutein and loroxanthin was measured using HPLC-DAD at 446 nm, with a flow rate of 1.0 mL/min using a Waters YMC C30 Carotenoid column (4.6 x 250 mm, 5 mu m). The confirmation of carotenoids after their isolation using preparative chromatography was achieved using liquid chromatography-tandem mass spectrometry (LC-MS/MS) with an atmospheric pressure chemical ionization (APCI) probe and UV-vis spectroscopy. In summary, S. obliquus shows significant promise for the large-scale extraction of lutein and loroxanthin. The findings of this study provide strong support for the application of this technology to other species.Article Citation - Scopus: 2The Uncertain Certainty of a Nightmare: What If Another Destructive Earthquake Strikes Izmir (türkiye)?(Mdpi, 2024) Salata, Stefano; Uzelli, TaygunOn 6 February 2023, near Kahramanmaras in south-central Turkiye, an event underscored the vulnerability of cities to seismic activity, revealing a lack of preparedness for substantial shocks. The contributing factors are manifold, yet fundamentally, the collapse of buildings and infrastructure can be attributed to an underestimated capacity for meticulous settlement planning (location) and the adoption of advanced techniques for resilient construction (structure). Regrettably, as has been investigated by many research works, ordinary urban planning in Turkiye hardly finds ways to integrate the vulnerability analysis for settlement expansion, which includes the full integration of geological characteristics with the analysis of building sensitivity. With this work, we wanted to build a composite risk index based on earthquake vulnerability, hazard amplification map, and exposure. We designed the composite index in Izmir's basin, Turkiye's third most populated city, to answer the question: What if a destructive earthquake strikes this densely settled area? The results illustrates how the coupled integration of digital data on geology with settlements and infrastructure in a Geographic Information System environment can be used to produce risk maps and plan the anthropic system's adaptation carefully. Findings demonstrate the city is highly vulnerable to earthquakes and identify priority areas for planning intervention, relocation, and renovation of buildings.