Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 1Citation - Scopus: 1An Iris Segmentation Scheme Based on Bendlets(Springer London Ltd, 2023) Aghazadeh, Nasser; Abbasi, Mandana; Noras, ParisaDue to the effect of agents such as ambiance, transition channel, and other agents, images are polluted by noise during collection, transition, and compaction, leading to decrease image quality. Noise can decrease the accuracy of the next stages of image processing systems. Therefore, one of the vital stages in the novel processing systems is denoising. This article offers a novel image denoising approach using bendlets. Other multi-scale transformations (such as wavelets, curvelets, and shearlets) cannot recognize properties such as location, direction, and curvature of discontinuities well in piecewise stable images. To solve this problem, bendlets are suggested in this article. Bendlets differ from other multi-scale transformations in that an additional bending parameter is utilized for recognizing the curvature of discontinuities. Bendlets need a fewer number of coefficients to identify curvatures than other multi-scale transformations. Furthermore, they help to make the edges more obvious. The suggested approach is utilized on the UBIRIS.V2 database. It earns better accuracy and stability than other multi-scale transformations.Article Citation - WoS: 3Citation - Scopus: 3Light-Induced Synthesis of Single-Crystalline Gold Microplates in an Open System(Amer Chemical Soc, 2023) Akkuş, Betül; Mert Balcı, FadimeBottom-up synthesis of large single-crystalline gold microplates is of key importance to catalysis, nanophotonics, bioengineering, and plasmonics. However, easy, low-cost, room-temperature, and high-yield synthesis of large gold microplates with several micrometers in lateral size and a few tens of nanometers in thickness by using photochemical synthesis in an open system is still challenging. We herein report on an easy and cost-effective photochemical synthesis of single-crystalline gold microplates with lateral sizes up to around 40 mu m and tens of nanometers in thickness in a few hours of reaction time in an open system containing a lyotropic liquid crystal, which is formed by self-assembly of 10-lauryl ether in a strong acid, sulfuric acid, along with water. We have found that by changing the reaction parameters, such as the reaction time, the concentration of gold ions in the liquid crystal, etc., the thickness and size of the microplates can be easily controlled. Most importantly, the liquid crystalline phase is completely preserved after completion of the photochemical reaction. The microplates can be easily isolated and transferred to different media such as alcohol and water for further studies, or they can be immediately used on a substrate after completion of the reaction. The results obtained in this study will allow us to understand the growth mechanism of gold microplates in open systems, and they will find applications in a variety of critical areas, such as plasmonics, nanophotonics, and catalysis.Article Iron-Promoted 1,5-Substitution Reaction of Endocyclic Enyne Oxiranes With Memgbr: a Stereoselective Method for the Synthesis of Exocyclic 2,4,5-Trienol Derivatives(MDPI, 2023) Kuş, Melih; Omur, Cenk; Karaca, Sila; Artok, LeventThe iron-promoted 1,5-substitution reaction of endocyclic oxiranes with MeMgBr yields exocyclic 2,4,5-trienols with high diastereomeric ratios of up to 100:0. However, for the method's success, the oxirane ring must have a trans-configuration. The reactions exhibit strong stereoselectivity concerning the methylation mode and the configuration of the resulting exocyclic double bond. Enantiomerically pure enyne oxiranes can be synthesized through Sharpless asymmetric dihydroxylation and subsequent manipulations. With these reagents, it has been possible to produce exocyclic 2,4,5-trienols in enantiopure forms. Importantly, this process maintains chirality without degradation during the center-to-axis transfer of chirality.Article Citation - WoS: 1Citation - Scopus: 1Light-Dark and Activity Rhythm Therapy (l-Dart) To Improve Sleep in People With Schizophrenia Spectrum Disorders: a Single-Group Mixed Methods Study of Feasibility, Acceptability and Adherence(MDPI, 2023) Faulkner, Sophie; Didikoğlu, Altuğ; Byrne, Rory; Drake, Richard; Bee, PennyPeople with a diagnosis of schizophrenia often have poor sleep, even when their psychotic symptoms are relatively well managed. This includes insomnia, sleep apnoea, hypersomnia, and irregular or non-24 h sleep-wake timing. Improving sleep would better support recovery, yet few evidence-based sleep treatments are offered to this group. This paper presents a mixed methods feasibility and acceptability study of Light-Dark and Activity Rhythm Therapy (L-DART). L-DART is delivered by an occupational therapist over 12 weeks. It is highly personalisable to sleep phenotypes and circumstances. Ten participants with schizophrenia spectrum diagnoses and sleep problems received L-DART; their sleep problems and therapy goals were diverse. We measured recruitment, attrition, session attendance, and adverse effects, and qualitatively explored acceptability, engagement, component delivery, adherence, activity patterns, dynamic light exposure, self-reported sleep, wellbeing, and functioning. Recruitment was ahead of target, there was no attrition, and all participants received the minimum 'dose' of sessions. Acceptability assessed via qualitative reports and satisfaction ratings was good. Adherence to individual intervention components varied, despite high participant motivation. All made some potentially helpful behaviour changes. Positive sleep and functioning outcomes were reported qualitatively as well as in outcome measures. The findings above support testing the intervention in a larger randomised trial ISRCTN11998005.Article Citation - Scopus: 6Functional Characterization of a Novel Cyp119 Variant To Explore Its Biocatalytic Potential(John Wiley and Sons Inc, 2022) Sakalli, T.; Surmeli, N.B.Biocatalysts are increasingly applied in the pharmaceutical and chemical industry. Cytochrome P450 enzymes (P450s) are valuable biocatalysts due to their ability to hydroxylate unactivated carbon atoms using molecular oxygen. P450s catalyze reactions using nicotinamide adenine dinucleotide phosphate (NAD(P)H) cofactor and electron transfer proteins. Alternatively, P450s can utilize hydrogen peroxide (H2O2) as an oxidant, but this pathway is inefficient. P450s that show higher efficiency with peroxides are sought after in industrial applications. P450s from thermophilic organisms have more potential applications as they are stable toward high temperature, high and low pH, and organic solvents. CYP119 is an acidothermophilic P450 from Sulfolobus acidocaldarius. In our previous study, a novel T213R/T214I (double mutant [DM]) variant of CYP119 was obtained by screening a mutant library for higher peroxidation activity utilizing H2O2. Here, we characterized the substrate scope; stability toward peroxides; and temperature and organic solvent tolerance of DM CYP119 to identify its potential as an industrial biocatalyst. DM CYP119 displayed higher stability than wild-type (WT) CYP119 toward organic peroxides. It shows higher peroxidation activity for non-natural substrates and higher affinity for progesterone and other bioactive potential substrates compared to WT CYP119. DM CYP119 emerges as a new biocatalyst with a wide range of potential applications in the pharmaceutical and chemical industry. © 2021 International Union of Biochemistry and Molecular Biology, Inc.Review Citation - WoS: 9Citation - Scopus: 12Readiness and Maturity Models for Industry 4.0: a Systematic Literature Review(John Wiley and Sons Ltd, 2023) Ünlü, H.; Demirörs, O.; Garousi, V.Industry 4.0 changes traditional manufacturing relationships from isolated optimized cells to fully integrated data and product flows across borders with its technological pillars. However, the transition to Industry 4.0 is not a straightforward journey in which organizations need assistance. A well-known approach that can be utilized during the early phases of the transition is to assess the capability of the organization. Maturity models are frequently used to improve capability. In this systematic literature review (SLR), we analyzed 22 maturity and readiness models based on 10 criteria: year, type, focus, structure, research methodology followed during the design of models, base frameworks, tool support, community support, objectivity, and extent of usage in practice. Our SLR provides a well-defined comparison for organizations to choose and apply available models. This SLR showed that (1) there is no widely accepted maturity/readiness model for Industry 4.0, as well as no international standard; (2) only a few models have received positive feedback from the industry, whereas most do not provide any practical usage information; and (3) the objectivity of the assessment method is controversial in most of the models. We have also identified a number of issues as open research areas for assessing readiness and maturity models for Industry 4.0. © 2023 John Wiley & Sons, Ltd.Article Citation - Scopus: 5Event Distortion-Based Clustering Algorithm for Energy Harvesting Wireless Sensor Networks(Springer, 2022) Al-Qamaji, A.; Atakan, B.Wireless sensor networks (WSNs) consist of compact deployed sensor nodes which collectively report their sensed readings about an event to the Base Station (BS). In WSNs, due to the dense deployment, sensor readings can be spatially correlated and it is nonessential to transmit all their readings to the BS. Therefore, for more energy efficient, it is vital to choose which sensor node should report their sensed readings to the BS. In this paper, the event distortion-based clustering (EDC) algorithm is proposed for the spatially correlated sensor nodes. Here, the sensor nodes are assumed to harvest energy from ambient electromagnetic radiation source. The EDC algorithm allows the energy-harvesting sensor nodes to select and eliminate nonessential nodes while maintain an acceptable level of distortion at the BS. To measure the reliability, a theoretical framework of the distortion function is first derived for both single-hop and two-hop communication scenarios. Then, based on the derived theoretical framework, the EDC algorithm is introduced. Through extensive simulations, the performance of the EDC algorithm is evaluated in terms of achievable distortion level, number of alive nodes and harvested energy levels. As a result, EDC algorithm can successfully exploit both the spatial correlation and energy harvesting to improve the energy efficiency while preserving an acceptable level of distortion. Furthermore, the performance comparisons reveal that the two-hop communication model outperforms the single-hop model in terms of the distortion and energy-efficiency. © 2021, The Author(s).Article Influence of Microstructure and Crystallographic Texture on Hydrogen Diffusion in If-Steel(Technical Faculty, Bor-serbia, 2023) Baskaya, U.; Uzun, R.; Davut, K.; Kilic, Y.; Gunduz, O.The relation between microstructure, crystallographic texture, and hydrogen diffusion was studied on a IF-steel. The steel samples were deep drawn to a strain level of 10%, 20%, 30% and 40% and then the hydrogen diffusion coefficients were determined using the Helios II system. Light optical microscope (LOM), scanning electron microscope (SEM) and electron backscatter diffraction (EBSD) were used for microstructural characterization and crystallographic texture studies. The dependence of microstructural parameters was evaluated by Pearson correlation coefficient (PCC) values. These evaluations showed that local misorientations, crystallographic texture, and dislocation densityare interdependent. The PCC values show that grain size and dislocation density are the independent microstructure related parameters. These parameters were used to build a model to predict the hydrogen diffusion coefficient by multiple linear regression analysis. A sensitivity analysis was also performed with this model to understand to which parameter the hydrogen diffusion is most sensitive. The results of this analysis show that hydrogen diffusion is more sensitive to dislocation density, suggesting that dislocations are more effective trapping sites for hydrogen atoms. On the other hand, grain boundaries are less effective trapping sites since they also provide an additional diffusion mechanism.Article Citation - WoS: 5Citation - Scopus: 6Sequence Identification and in Silico Characterization of Novel Thermophilic Lipases From Geobacillus Species(WILEY, 2023) Sürmeli, Yusuf; Tekedar, Hasan Cihad; Sanli-Mohamed, GulsahMicrobial lipases are utilized in various biotechnological areas, including pharmaceuticals, food, biodiesel, and detergents. In this study, we cloned and sequenced Lip21 and Lip33 genes from Geobacillus sp. GS21 and Geobacillus sp. GS33, then we in silico and experimentally analyzed the encoded lipases. For this purpose, Lip21 and Lip33 were cloned, sequenced, and their amino acid sequences were investigated for determination of biophysicochemical characteristics, evolutionary relationships, and sequence similarities. 3D models were built and computationally affirmed by various bioinformatics tools, and enzyme-ligand interactions were investigated by docking analysis using six ligands. Biophysicochemical property of Lip21 and Lip33 was also determined experimentally and the results demonstrated that they had similar isoelectric point (pI) (6.21) and T-m (75.5(degrees)C) values as T-m was revealed by denatured protein analysis of the circular dichroism spectrum and pI was obtained by isoelectric focusing. Phylogeny analysis indicated that Lip21 and Lip33 were the closest to lipases from Geobacillus sp. SBS-4S and Geobacillus thermoleovorans, respectively. Alignment analysis demonstrated that S144-D348-H389 was catalytic triad residues in Lip21 and Lip33, and enzymes possessed a conserved Gly-X-Ser-X-Gly motif containing catalytic serine. 3D structure analysis indicated that Lip21 and Lip33 highly resembled each other and they were alpha/beta hydrolase-fold enzymes with large lid domains. BAN Delta IT analysis results showed that Lip21 and Lip33 had higher thermal stability, compared to other thermostable Geobacillus lipases. Docking results revealed that Lip21- and Lip33-docked complexes possessed common residues (H112, K115, Q162, E163, and S141) that interacted with the substrates, except paranitrophenyl (pNP)-C10 and pNP-C12, indicating that these residues might have a significant action on medium and short-chain fatty acid esters. Thus, Lip21 and Lip33 can be potential candidates for different industrial applications.Article Citation - WoS: 24Citation - Scopus: 23Photovoltaic Performance of Magnetron Sputtered Antimony Selenide Thin Film Solar Cells Buffered by Cadmium Sulfide and Cadmium Sulfide /Zinc Sulfide(Elsevier B.V., 2023) Cantas, A.; Gundogan, S.H.; Turkoglu, F.; Koseoglu, H.; Aygun, G.; Ozyuzer, L.Antimony selenide (Sb2Se3)-based thin-film solar cells have recently attracted worldwide attention as an abundant, low-cost, and efficient photovoltaic technology. The highest efficiencies recorded for Sb2Se3 solar cells have been obtained using cadmium sulfide (CdS) as a buffer layer. The Cd-included hybrid buffer layers could be one option to increase device efficiency through more effective usage of light. Therefore, in this work, the effect of single CdS and hybrid CdS/zinc sulfide (ZnS) buffer layers on the photovoltaic performance of Sb2Se3 thin-film solar cells has been investigated in detail. Sb2Se3 thin films have been deposited on molybdenum (Mo)-coated soda-lime glass (SLG) substrates by radio frequency magnetron sputtering technique followed by a post-heat treatment process. The morphological, and structural properties of Sb2Se3 thin films have been investigated by X-Ray Diffraction and Scanning Electron Microscopy. To compare the device performances of single CdS and hybrid CdS/ZnS buffered Sb2Se3 thin-film solar cells, SLG/Mo/Sb2Se3/CdS/ZnS/indium tin oxide (ITO) and SLG/Mo/Sb2Se3/CdS/ITO structures have been fabricated. The findings of this study have revealed a reduction in solar cells’ performance from η=3.93% for CdS buffer to η=0.13% for CdS/ZnS hybrid buffer. The change in the solar cell performance using the CdS/ZnS hybrid buffer has been discussed in detail. © 2023 Elsevier B.V.