Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 83Citation - Scopus: 90Packed Bed Column Dynamic Study for Boron Removal From Geothermal Brine by a Chelating Fiber and Breakthrough Curve Analysis by Using Mathematical Models(Elsevier Ltd., 2018) Recepoğlu, Yaşar Kemal; Kabay, Nalan; Yılmaz İpek, İdil; Arda, Müşerref; Yüksel, Mithat; Yoshizuka, Kazuharu; Nishihama, SyouheiIn this study, the performance of N-methyl-D-glucamine (NMDG) type functional group attached a novel boron selective chelating fiber adsorbent, Chelest Fiber GRY-HW, was investigated for boron removal from geothermal brine containing 10–11 mg B/L through a packed bed column. The effect of feed flow rate (Space Velocity, SV) on breakthrough capacity of Chelest Fiber GRY-HW was studied using various SV values (15, 20 and 30 h−1). The effect of SV on breakthrough capacity was particularly apparent when SV was decreased from 30 to 15 h−1. Yoon–Nelson, Thomas and Modified Dose Response (MDR) models were applied to the experimental data to estimate the breakthrough curves and model parameters such as rate constants and breakthrough times. The obtained results showed that the breakthrough curves were better described by Modified Dose Response (MDR) model than those described by Yoon-Nelson and Thomas models in each case. Also, the model estimations for adsorption capacity obtained by MDR model agreed well with the experimental results.Article Citation - WoS: 14Citation - Scopus: 16Transcriptomic Analysis of Boron Hyperaccumulation Mechanisms in Puccinellia Distans(Elsevier Ltd., 2018) Öztürk, Saniye Elvan; Göktay, Mehmet; Has, Canan; Babaoğlu, Mehmet; Allmer, Jens; Doğanlar, Sami; Frary, AnnePuccinellia distans, common alkali grass, is found throughout the world and can survive in soils with boron concentrations that are lethal for other plant species. Indeed, P. distans accumulates very high levels of this element. Despite these interesting features, very little research has been performed to elucidate the boron tolerance mechanism in this species. In this study, P. distans samples were treated for three weeks with normal (0.5 mg L−1) and elevated (500 mg L−1) boron levels in hydroponic solution. Expressed sequence tags (ESTs) derived from shoot tissue were analyzed by RNA sequencing to identify genes up and down-regulated under boron stress. In this way, 3312 differentially expressed transcripts were detected, 67.7% of which were up-regulated and 32.3% of which were down-regulated in boron-treated plants. To partially confirm the RNA sequencing results, 32 randomly selected transcripts were analyzed for their expression levels in boron-treated plants. The results agreed with the expected direction of change (up or down-regulation). A total of 1652 transcripts had homologs in A. thaliana and/or O. sativa and mapped to 1107 different proteins. Functional annotation of these proteins indicated that the boron tolerance and hyperaccumulation mechanisms of P. distans involve many transcriptomic changes including: alterations in the malate pathway, changes in cell wall components that may allow sequestration of excess boron without toxic effects, and increased expression of at least one putative boron transporter and two putative aquaporins. Elucidation of the boron accumulation mechanism is important in developing approaches for bioremediation of boron contaminated soils.Article Citation - WoS: 12Citation - Scopus: 14Roles of Atr1 Paralogs Ymr279c and Yor378w in Boron Stress Tolerance(Elsevier Ltd., 2011) Bozdağ, Gönensin Ozan; Uluışık, İrem; Gülcüler, Gülce Sıla; Karakaya, Hüseyin Çağlar; Koç, AhmetBoron is a necessary nutrient for plants and animals, however excess of it causes toxicity. Previously, Atr1 and Arabidopsis Bor1 homolog were identified as the boron efflux pump in yeast, which lower the cytosolic boron concentration and help cells to survive in the presence of toxic amount of boron. In this study, we analyzed ATR1 paralogs, YMR279c and YOR378w, to understand whether they participate in boron stress tolerance in yeast. Even though these genes share homology with ATR1, neither their deletion rendered cells boron sensitive nor their expression was significantly upregulated by boron treatment. However, expression of YMR279, but not YOR378w, from the constitutive GAPDH promoter on a high copy plasmid provided remarkable boron resistance by decreasing intracellular boron levels. Thus our results suggest the presence of a third boron exporter, YMR279c, which functions similar to ATR1 and provides boron resistance in yeast.Article Citation - WoS: 45Citation - Scopus: 43Analysis of Electronic Parameters and Interface States of Boron Dispersed Triethanolamine/P-si Structure by Afm, I-V, C-V and G/?-v-f Techniques(Elsevier Ltd., 2010) Yakuphanoğlu, Fahrettin; Okur, SalihThe electronic parameters and interface state properties of boron dispersed triethanolamine/p-Si structure have been investigated by atomic force microscopy, I-V, C-V-f and G/ω-V-f techniques. The surface topography and phase image of the TEA-B film deposited onto p-Si substrate were analyzed by atomic force microscopy. The atomic force microscopy results show a homogenous distribution of boron particles in triethanolamine film. The electronic parameters (barrier height, ideality factor and average series resistance) obtained from I-V characteristics of the diode are 0.81 eV, 2.07 and 5.04 kΩ, respectively. The interface state density of the diode was found to be 2.54 × 1010 eV- cm-2 under Vg = 0. The obtained Dit values obtained from C-V and G/ω measurements are in agreement with each other. The profile of series resistance dependent on voltage and frequency confirms the presence of interface states in boron dispersed triethanolamine/p-Si structure. It is evaluated that the boron dispersed triethanolamine controls the electronic parameters and interface properties of conventional Al/p-Si diode. © 2009 Elsevier B.V. All rights reserved.Article Citation - WoS: 20Citation - Scopus: 20Genome-Wide Identification of Genes That Play a Role in Boron Stress Response in Yeast(Elsevier Ltd., 2011) Uluışık, İrem; Kaya, Alaattin; Ünlü, Ercan Selçuk; Avşar, Kadir; Karakaya, Hüseyin Çağlar; Yalçın, Talat; Koç, AhmetBoron is an essential micronutrient for plants and it is either necessary or beneficial for animals. Studies identified only few genes related to boron metabolism thus far and details of how boron is imported into cells and used in cell metabolism are largely unknown. In order to identify genes that play roles in boron metabolism, we screened the entire set of yeast haploid deletion mutants and identified 6 mutants that were resistant to toxic levels of boron, and 21 mutants that were highly sensitive to boron treatment. Furthermore, we performed a proteomic approach to identify additional proteins that are significantly up-regulated by boron treatment. Our results revealed many genes and pathways related to boron stress response and suggest a possible link between boron toxicity and translational control.Article Citation - WoS: 123Citation - Scopus: 131A New Methodology for Removal of Boron From Water by Coal and Fly Ash(Elsevier Ltd., 2004) Polat, Hürriyet; Vengosh, Avner; Pankratov, Irena; Polat, MehmetHigh levels of boron concentrations in water present a serious problem for domestic and agriculture utilizations. The recent EU drinking water directive defines an upper limit of 1 mgB/I. In addition, most crops are sensitive to boron levels >0.75 mg/1 in irrigation water. The boron problem is magnified by the partial (∼60%) removal of boron in reverse osmosis (RO) desalination due to the poor ionization of boric acid and the accumulation of boron in domestic sewage effluents. Moreover, high levels of boron are found in regional groundwater in some Mediterranean countries, which requires special treatment in order to meet the EU drinking water regulations. Previous attempts to remove boron employed boron-specific ion-exchange resin and several cycles of RO desalination under high pH conditions. Here, we present an alternative methodology for boron removal by using coal and fly ash as adsorbents. We conducted various column and batch experiments that explored the efficiency of boron removal from seawater and desalinated seawater using several types of coal and fly ash materials under controlled conditions (pH, liquid/solid ratio, time of reaction, pre-treatment, regeneration). We examined the effect of these factors on the boron removal capacity and the overall chemical composition of the residual seawater. The results show that the selected coal and fly ash materials are very effective in removing boron such that the rejection ratio of boron can reach 95% of the initial boron content under certain optimal conditions (e.g., pH = 9, L/S = 1/10, reaction time > 6 h). Our experiments demonstrated that use of glycerin enables regeneration of boron uptake into coal, but the boron uptake capacity of fly ash reduces after several cycles of treatment-reaction. The boron removal is associated with Mg depletion and Ca enrichment in the residual seawater and conversely with relative Mg enrichment and Ca depletion in the residual fly ash. We propose that the reaction of Ca-rich fly ash with Mg-rich seawater causes co-precipitation of magnesium hydroxide in which boron is co-precipitated. The new methodology might provide an alternative technique for boron removal in areas where coal and fly ash are abundant.Article Citation - WoS: 78Citation - Scopus: 83Synthesis, Characterization and Application of a Novel Sorbent, Glucamine-Modified Mcm-41, for the Removal/Preconcentration of Boron From Waters(Elsevier Ltd., 2005) Kaftan, Öznur; Açıkel, Müge; Eroğlu, Ahmet Emin; Shahwan, Talal; Artok, Levent; Ni, ChaoyingA novel sorbent was prepared by the functionalization of an inorganic support material, MCM-41, with N-methylglucamine for the uptake of boron from aqueous solutions prior to its determination by inductively coupled plasma optical emission spectrometry (ICP–OES). Characterization of the newly synthesized material was performed using BET, XRD, TEM, SEM and DRIFTS techniques, in addition to its C and N elemental content. Sorption behavior of the novel sorbent for boron was also investigated and found to obey Freundlich and Dubinin–Radushkevich (D–R) isotherm models. The maximum amount of B (as H3BO3) that can be sorbed by the sorbent was calculated from the D–R isotherm and was found to be 0.8 mmol B g−1 of sorbent. The applicability of the new sorbent for the removal/preconcentration of boron from aqueous samples was examined by batch method. It was found that the sorbent can take up 85% of boron in 5 min whereas quantitative sorption is obtained in 30 min. Any pH greater than 6 can be used for sorption. Desorption from the sorbent was carried out using 1.0 M HNO3. The sorption efficiency of the new sorbent was also compared to that of Amberlite IRA 743, a commercial resin with N-methylglucamine functional groups. Within the experimental conditions employed, the new sorbent was found to have higher sorption efficiency than the commercial resin. For method validation, spike recovery tests were performed at various concentration levels in different water types and were found to be between 83–95 and 75–92% for ultra pure water and geothermal water, respectively.