Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 12Citation - Scopus: 14Thermodynamically Designed Target-Specific Dna Probe as an Electrochemical Hybridization Biosensor(Elsevier Ltd., 2020) Can, Faruk; Ökten, Hatice Eser; Ergön Can, Tülay; Ergenekon, Pınar; Özkan, Melek; Erhan, ElifApplications of molecular techniques to elucidate identity or function using biomarkers still remain highly empirical and biosensors are no exception. In the present study, target-specific oligonucleotide probes for E. coli K12 were designed thermodynamically and applied in an electrochemical DNA biosensor setup. Biosensor was prepared by immobilization of a stem–loop structured probe, modified with a thiol functional group at its 5′ end and a biotin molecule at its 3′ end, on a gold electrode through self-assembly. Mercaptopropionic acid (MPA) was used to optimize the surface probe density of the electrode. Hybridization between the immobilized probe and the target DNA was detected via the electrochemical response of streptavidin-horseradish peroxidase in the presence of the substrate. The amperometric response showed a linear relationship with the target DNA concentration, ranging from 10 and 400 nM, with a correlation coefficient of 0.989. High selectivity and good repeatability of the biosensor showed that the thermodynamic approach to oligonucleotide probe design can be used in development of electrochemical DNA biosensors.Conference Object Citation - WoS: 21Citation - Scopus: 21Development of a Continuous Flow Hydride Generation Laser-Induced Breakdown Spectroscopic System: Determination of Tin in Aqueous Environments(Elsevier Ltd., 2010) Ünal, Semira; Yalçın, ŞerifeThe design, construction and optimization studies of a continuous flow hydride generation laser-induced breakdown spectroscopic system, HG-LIBS, for the determination of tin in aqueous environments is presented. Optimization of the Laser Induced Breakdown Spectroscopy (LIBS) signal with respect to carrier gas flow rate, analyte, acid (HCl) and reductant (NaBH4) concentrations and flow rates was performed by using spectral emission intensity from the neutral Sn(I) line at 284.0 nm under atmospheric pressures. With flow rates of 5.0 mL/min for NaBH4 and 2.5 mL/min for HCl, optimum NaBH4 and HCl concentrations were determined as 2.0% (w/v) and 1.0% (v/v), respectively. The hydride generation efficiency of the system was tested for tin hydride, stannane (SnH4), by inductively coupled plasma mass spectrometer (ICP-MS). It was found that higher than 99% of the analyte was released into the gaseous phase. Upon optimization, the minimum detectable Sn concentration was found as 0.3 mg/L in water samples. That corresponds to more than two orders of increase in sensitivity compared to methods that employ common sample introduction techniques in liquids analysis by LIBS. Over 90% recoveries were obtained from spiking experiments with river, tap and drinking water samples. Results illustrate potential use of the continuous flow HG-LIBS system for monitoring of Sn concentrations in aqueous environments. © 2010 Elsevier Ltd. All rights reserved.