Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 13Citation - Scopus: 17Machine Learning-Assisted Prediction of the Toxicity of Silver Nanoparticles: a Meta-Analysis(Springer, 2023) Bilgi, Eyüp; Öksel Karakuş, CeydaSilver nanoparticles are likely to be more dangerous than other forms of silver due to the intracellular release of silver ions upon dissolution and the formation of mixed ion-containing complexes. Such concerns have resulted in an ever-growing pile of scientific evaluations addressing the safety aspects of nanosilver with widely varying methodological approaches. The substantial differences in the conduct/design of nanotoxicity screening have led to the generation of conflicting findings that may be accurate in their narrative but fail to provide a complete picture. One strategy to maximize the use of individual risk assessments with potentially biased estimates of toxicological effects is to homogenize results across several studies and to increase the generalizability and human relevance of their findings. Here, we collected a large pool of data (n=162 independent studies) on the cytotoxicity of nanosilver and unrevealed potential triggers of toxicity. Two different machine learning approaches, decision tree (DT) and artificial neural network (ANN), were primarily employed to develop models that can predict the cytotoxic potential of nanosilver based on material- and assay-related parameters. Other machine learning algorithms (logistic regression, Gaussian Naive Bayes, k-nearest neighbor, and random forest classifiers) were also applied. Among several attributes compared, exposure concentration, duration, zeta potential, particle size, and coating were found to have the most substantial impact on nanotoxicity, with biomolecule- and microorganism-assisted surface modifications having the most beneficial and detrimental effects on cell survival, respectively. Such machine learning-assisted efforts are critical to developing commercially viable and safe nanosilver-containing products in the ever-expanding nanobiomaterial market.Article Citation - WoS: 40Citation - Scopus: 38Investigating the Local-Scale Fluctuations of Groundwater Storage by Using Downscaled Grace/Grace-fo Jpl Mascon Product Based on Machine Learning (ml) Algorithm(Springer, 2023) Khorrami, Behnam; Ali, Shoaib; Gündüz, OrhanGroundwater storage is of grave significance for humanity by sustaining the required water for agricultural irrigation, industry, and domestic use. Notwithstanding the impressive contribution of the state-of-the-art Gravity Recovery and Climate Experiment (GRACE) to detecting the groundwater storage anomaly (GWSA), its feasibility for the characterization of GWSA variation hotspots over small scales is still a major challenge due to its coarse resolution. In this study, a spatial water balance approach is proposed to enhance the spatial depiction of groundwater storage and depletion changes that can detect the hotspots of GWSA variation. In this study, Random Forest Machine Learning (RFML) model was utilized to simulate fine-resolution (10 km) groundwater storage based on the coarse resolution (50 km) of GRACE observations. To this end, parameters including soil moisture, snow water, evapotranspiration, precipitation, surface runoff, surface elevation, and GRACE data were integrated into the RFML model. The results show that with a correlation of above 0.98, the RFML model is very successful in simulating the fine-resolution groundwater storage over the Western Anatolian Basin (WAB), Turkiye. The results indicate an estimated annual depletion rate of 0.14 km(3)/year for the groundwater storage of the WAB, which is equivalent to about 2.57 km(3) of total groundwater depletion from 2003 to 2020. The findings also suggest that the downscaled GWSA is in harmony with the original GWSA in terms of temporal variations. The validation of the results demonstrates that the correlation is increased from 0.56 (for the GRACE-derived GWSA) to 0.60 (for the downscaled GWSA) over the WAB.Article Citation - WoS: 4Citation - Scopus: 4Predicting the Soft Error Vulnerability of Parallel Applications Using Machine Learning(Springer, 2021) Öz, Işıl; Arslan, SanemWith the widespread use of the multicore systems having smaller transistor sizes, soft errors become an important issue for parallel program execution. Fault injection is a prevalent method to quantify the soft error rates of the applications. However, it is very time consuming to perform detailed fault injection experiments. Therefore, prediction-based techniques have been proposed to evaluate the soft error vulnerability in a faster way. In this work, we present a soft error vulnerability prediction approach for parallel applications using machine learning algorithms. We define a set of features including thread communication, data sharing, parallel programming, and performance characteristics; and train our models based on three ML algorithms. This study uses the parallel programming features, as well as the combination of all features for the first time in vulnerability prediction of parallel programs. We propose two models for the soft error vulnerability prediction: (1) A regression model with rigorous feature selection analysis that estimates correct execution rates, (2) A novel classification model that predicts the vulnerability level of the target programs. We get maximum prediction accuracy rate of 73.2% for the regression-based model, and achieve 89% F-score for our classification model.Conference Object Citation - Scopus: 1A Novel Feature To Predict Buggy Changes in a Software System(Springer, 2022) Yılmaz, Rahime; Nalçakan, Yağız; Haktanır, ElifResearchers have successfully implemented machine learning classifiers to predict bugs in a change file for years. Change classification focuses on determining if a new software change is clean or buggy. In the literature, several bug prediction methods at change level have been proposed to improve software reliability. This paper proposes a model for classification-based bug prediction model. Four supervised machine learning classifiers (Support Vector Machine, Decision Tree, Random Forrest, and Naive Bayes) are applied to predict the bugs in software changes, and performance of these four classifiers are characterized. We considered a public dataset and downloaded the corresponding source code and its metrics. Thereafter, we produced new software metrics by analyzing source code at class level and unified these metrics with the existing set. We obtained new dataset to apply machine learning algorithms and compared the bug prediction accuracy of the newly defined metrics. Results showed that our merged dataset is practical for bug prediction based experiments. © 2022, The Author(s), under exclusive license to Springer Nature Switzerland AG.