Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 5Citation - Scopus: 4Characterization of Water Solubility and Binding of Spin Labeled Drugs in the Presence of Albumin Nanoparticles and Proteins by Electron Paramagnetic Resonance Spectroscopy(Wiley-Blackwell, 2022) Sözer, Sümeyra Çiğdem; Akdoğan, YaşarElectron paramagnetic resonance (EPR) spectroscopy is an advantageous technique to monitor solubility of drugs in an aqueous solution. In the presence of a drug carrier, the bound and unbound drug fractions can be determined in the same sample simultaneously. To enhance the solubility of hydrophobic drugs, a transporter protein of bovine serum albumin (BSA) can be used directly or in the form of nanoparticle. Moreover, a cationic BSA can be used to enhance anionic drug loading. Here, drugs with different water solubility, salicylic acid (high), ibuprofen (low) and chlorambucil (none) were spin labeled and studied with EPR spectroscopy. Remarkably, it has been shown that albumin nanoparticles are much more effective than albumin proteins in dissolving hydrophobic drugs in water. Furthermore, different drug loading methods were compared, and different from other techniques drug release can be monitored directly from the NPs pellet dissolution by EPR spectroscopy.Article Citation - WoS: 6Citation - Scopus: 6Photocatalytic Activity of Dye-Sensitized and Non-Sensitized Go-Tio2 Nanocomposites Under Simulated and Direct Sunlight(Wiley-Blackwell, 2022) İlhan, Hatice; Durmaz Çaycı, Gamze Belkis; Aksoy, Erkan; Diker, Halide; Varlıklı, CananGraphene oxide (GO), amine-modified graphene oxide (mGO), and N-TiO2 composites were synthesized by low-temperature hydrothermal method and characterized by using X-ray diffraction, X-ray photoelectron spectroscopy, FTIR, and BET analysis techniques. The films of synthesized TiO2, mGO:TiO2, N-TiO2, GO:TiO2, GO:N-TiO2, and commercially available P25 were prepared by doctor blade method. These films and their perylene-3,4,9,10-tetracarboxy tetrabutylester (PTE)-sensitized forms were employed as photocatalysts for the photodegradation of rhodamine-B (RhB) under Xe lamp and direct sunlight irradiations. Independent from the irradiation source, the photocatalytic order of the non-sensitized films were GO:N-TiO2 > GO:TiO2 > N-TiO2 > mGO:TiO2 > TiO2 > P25, but seven and 15 folds of increments were detected under direct sunlight irradiation. PTE-sensitized catalyst films exhibited more than two folds of increase in the photocatalytic rate constants compared to their non-sensitized counterparts under Xe lamp irradiation. Under direct sunlight irradiation no matter which photocatalyst was used, the photocatalytic activity of these films was enhanced seven folds. Reusability tests revealed no significant changes in the photocatalytic rate constants obtained with both the non-sensitized and sensitized films.Article Citation - WoS: 3Citation - Scopus: 1Transition Metal Salt Promoted, Green, and High-Yield Synthesis of Silver Nanowires for Flexible Transparent Conductive Electrodes(Wiley-Blackwell, 2021) Sarısözen, Sema; Tertemiz, Necip Ayhan; Arıca, Tuğçe Aybüke; Polat, Nahit; Kocabaş, Çoşkun; Mert Balcı, Fadime; Balcı, SinanSilver nanowires (AgNWs) have attracted considerable interest from both academia and industry owing to their excellent electrical, optical, and chemical properties. For large-scale synthesis of AgNWs, the polyol method involving ethylene glycol, a toxic alcohol, has been widely used. We herein report on a facile, green, high yield, transition metal salt promoted, open atmosphere method for the synthesis of high quality AgNWs in a glycerol-water mixture. We have shown that transition metal salts have a strong influence on the morphology of AgNWs. Importantly, in the presence of copper(II) chloride, AgNWs with a high aspect ratio of around 400 (length, 36 μm; diameter, 90 nm) were obtained. Additionally, for the first time, we have demonstrated AgNWs based flexible transparent conductive electrodes (TCEs) on poly(sodium 4-styrenesulfonate) (PSS) treated polyethylene terephthalate (PET) substrate with a sheet resistance of 34 Ω/sq and transmittance of 91 % at 550 nm. The PSS layer on the PET substrate generated a highly hydrophilic surface, which boosts interaction of AgNWs with the PET surface. We envision that our results would play a significant role both in the synthesis of AgNWs with high aspect ratio and also in designing new rigid and flexible TCEs having high transmittance and low sheet resistance for applications especially in printable solar cells, organic light emitting diodes, and high performance flexible electronics.Article Gas-Phase Fragmentation Reactions of A7 Ions Containing a Glutamine Residue(Wiley-Blackwell, 2021) Atik, Ahmet; Arslanoğlu, Alper; Yalçın, Talat; Atik, Ahmet; Arslanoğlu, Alper; Yalçın, TalatThe gas-phase fragmentation reactions of the a7 ions derived from glutamine (Q) containing model heptapeptides have been studied in detail with low-energy collision-induced dissociation (CID) tandem mass spectrometry (MS/MS). Specifically, the positional effect of the Q residue has been investigated on the fragmentation reactions of a7 ions. The study involves two sets of permuted isomers of the Q containing model heptapeptides. The first set contains the QAAAAAA sequence, and the second set involves of QYAGFLV sequence, where the position of the Q residue is changed from N- to C-terminal gradually for both peptide series. An intense loss of ammonia from the a7 ions followed by internal amino acid eliminations strongly supports forming the imine-amides structure via cyclization/rearrangement reaction for all studied a7 ions. This is in agreement with the pioneering study reported by Bythell et al. (2010, 10.1021/ja101556g). A novel rearrangement reaction is detected upon fragmentation of imine-amide structure, which yields a protonated C-terminal amidated hexapeptide excluding the Q residue. A possible fragmentation mechanism was proposed to form the protonated C-terminal amidated hexapeptide, assisted via nucleophilic attack of the side chain amide nitrogen of the Q residue on its N-protonated imine carbon atom of the rearranged imine-amide structure. Highlights: The gas-phase fragmentation reactions of a7 ions obtained from protonated model peptides containing glutamine residue were studied by ESI-MS/MS. A rearranged imine-amide structure is the predominant even for a7 ions. Novel rearrangement reaction is observed which forms a protonated C-terminal amidated hexapeptide excluding Q residue upon fragmentation of the imine-amide structure.Article Citation - WoS: 53Citation - Scopus: 63Effective Stress Principle for Saturated Fractured Porous Media(Wiley-Blackwell, 1995) Tuncay, Kağan; Çorapçıoğlu, M. YavuzAn effective stress principle for saturated fractured porous media is proposed based On the double-porosity representation. Both the solid grains and the fractured porous medium are assumed to be linearly elastic materials. The derivation employs volume averaging technique to obtain macroscopic scale expressions. Two parameters, the bulk modulus of the fractured medium and bulk modulus of the porous matrix, are introduced in the formulation. The final expression reduces to the one obtained by Blot and Willis [1957], Skempton [1960], Nur and Byeerle [1971], and Verruijt [1984] when the volume fraction of the fractures vanishes, that is, for a nonfractured porous medium.