Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Artificial Intelligence for Improving Thermal Comfort through Envelope Design in Residential Buildings: Recent Developments and Future Directions(Elsevier Science Sa, 2026) Bayraktar, Arda; Ekici, BerkEnvelopes are vital components for improving thermal comfort in almost all building typologies. Yet, the design and analysis of envelopes are complex, as they involve multiple aspects and various parameters, ensuring comfort standards. Improving thermal comfort in residential buildings is within the scope of researchers to suggest sustainable design alternatives that consider multiple performance aspects and design parameters. Previous review articles have focused on improving thermal performance in residential buildings from the perspective of envelope technology, materials, and design strategies. However, none of them investigated current developments using artificial intelligence (AI), which inevitably supports decision-making in complex circumstances for a sustainable built environment. This review examines the contribution of AI methods, which consist of metaheuristic optimization and machine learning algorithms as sub-branches, to envelope parameters. The paper systematically reviews 95 relevant works on AI, including early approaches, to provide a comprehensive overview of current developments, following PRISMA guidelines. The results showed that early applications considered conventional approaches to improve thermal comfort and energy performance, which mostly limit the results to specified cases. On the other hand, studies utilizing AI methods dealt with numerous parameters, allowing them to cope with complex envelope systems in a reasonable amount of time. The study addresses relevant research questions related to the trends, research methods, system types, AI methods, data types, and their relation to performance and envelope parameters. The study also provides actionable insight, underlining gaps and future works for utilizing machine learning methods in the reviewed research domain.Article A Machine Learning Framework for Advanced Analytical Detection of CD36 Using Immunosensors Below Limit of Detection(Elsevier Ltd, 2026) Yeke, M.C.; Gelen, S.S.; Fil, H.; Yalcin, M.M.; Gumus, A.; Yazgan, I.; Odaci, D.We introduce a machine learning (ML)-based regression framework for quantitative electrochemical analysis, representing a paradigm shift from traditional univariate methods to a multivariate approach. Conventional analysis is constrained by reducing the entire signal to a single peak current feature to define a linear range and calculate a limit of detection (LOD). In contrast, our methodology treats the Differential Pulse Voltammetry (DPV) curve as time-series data, creating a high-dimensional fingerprint by systematically evaluating multiple data windows with varying widths around the main signal peak to identify the most informative segment. To validate this approach, a biosensor was developed by immobilizing Anti-CD36 antibodies on polydopamine-modified screen-printed carbon electrodes for the detection of CD36, a key protein in metabolism and immunity. Measurements were collected across 12 concentrations, including blank samples, spanning a range of 0 to 25 ng/mL. Following data augmentation, nine different regression models were evaluated, with the top-performing models achieving near-perfect prediction accuracy (R2>0.99) across this entire range. This high accuracy across the full concentration spectrum quantitatively demonstrates the method's ability to operate without relying on traditional concepts like linear range or LOD, enabling reliable detection at ultra-low levels. Furthermore, the immunosensor exhibited high selectivity against common interferents and excellent recovery in human serum. This methodology represents a significant advancement in analytical electrochemistry, providing a transferable approach for enhancing sensitivity in biomarker detection with potential applications in clinical diagnostics and biomedical research. The codes and dataset are made publicly available on GitHub to support further research: https://github.com/miralab-ai/biosensors-AI. © 2026 The Author(s)Article Development and Validation of Regression Model via Machine Learning to Estimate Thermal Conductivity and Heat Flow Using Igneous Rocks from the Dikili-Bergama Geothermal Region, Western Anatolia(Pergamon-Elsevier Science Ltd, 2026) Ayzit, Tolga; Sahin, Onur Gungor; Erol, Selcuk; Baba, AlperThermal conductivity is a fundamental parameter that significantly influences the thermal regime of the lithosphere. It plays a crucial role in a variety of geological applications, including geothermal energy exploration, igneous system assessment, and tectonic modeling. In this study, a machine learning approach is used to predict the thermal conductivity of igneous rocks based on the composition of major oxides. A total of 488 samples from different regions of the world were analyzed. The thermal conductivity values ranged from 1.20 to 3.74 Wm(-1) K-1 and the mean value was 2.61 Wm(-1) K-1. The Random Forest (RF) algorithm was used, resulting in a high coefficient of determination (R-2 = 0.913 for training and R-2 = 0.794 for testing) and a root mean square error (RMSE) of 0.112 and 0.179, respectively. Significance analysis of the traits identified SiO2 (>40 %), Na2O (>15 %) and Al2O3 (>10 %) as the most influential predictors. The study presented results from the Western Anatolia region, where felsic rocks had the highest thermal conductivity (mean = 2.69 Wm(-)(1)K(-)(1)) compared to mafic (mean = 2.34 Wm(-)(1)K(-)(1)) and ultramafic rocks (mean = 2.39 Wm(-)(1)K(-)(1)). In addition, the study evaluated the predictive capabilities of machine learning models for the igneous rocks of the Dikili-Bergama region and compared the results with those of saturated models. Using these data, we calculated heat flow values of up to 400 mWm(-2) under saturated conditions in western Anatolia. These results highlight the value of integrating geochemical data with machine learning to improve geothermal resource exploration and lithospheric modeling.Article A Knowledge-Driven Computer Vision Framework for Automated Atomic Force Microscopy Surface Characterization(Elsevier Science Ltd, 2026) Deveci, D. Gemici; Barandir, T. Karakoyun; Unverdi, O.; Celebi, C.This study presents an innovative analytical framework developed to automate Atomic Force Microscopy (AFM)-based surface characterization. The proposed methodology integrates computer vision (CV) algorithms and machine learning (ML) techniques to overcome the limitations of conventional observer-dependent approaches and visual inspection methods. In the first stage of the two-step data processing pipeline, raw AFM signals were converted into structured datasets, correspondences between images acquired under different loading conditions were identified, and drift effects in both direction and magnitude were predicted using a LightGBM-based machine learning (ML) model to guide subsequent analytical processes. This process establishes a unified coordinate reference across varying force levels, enabling pixel-level comparability of surface maps. In the second stage, the aligned datasets are systematically analyzed through block-based local maxima detection, edge-based contour extraction, morphological filtering, and skeletonization algorithms. In this way, ridge-like surface features are reliably identified and quantitatively evaluated along their axes under varying force conditions. The framework ensures data integrity while enabling high-resolution and reproducible analyzes. Beyond its automation capability, it is distinguished by its integrated, modular architecture, where each component operates sequentially along a unified processing pipeline. The methodology was validated using epitaxial monolayer graphene grown on the C-face of SiC, successfully demonstrating its ability to resolve both geometric and force-dependent mechanical responses. In this regard, the proposed system extends beyond conventional cross-sectional analysis by providing a drift-aware, knowledge-guided compensation mechanism and directionally resolved evaluation, offering a robust, automation-ready infrastructure for nanoscale surface characterization.Article A Machine Learning Model for Predicting Oligoclonal Band Positivity Using Routine Cerebrospinal Fluid and Serum Biochemical Markers(Oxford University Press Inc, 2025) Gözgöz, Hazar; Orhan, Oğuzhan; Akan Konuk, Başak; Akan, PınarOBJECTIVE: To develop and validate a machine learning model for predicting oligoclonal band (OCB) positivity using routine cerebrospinal fluid (CSF) and serum biochemical markers to improve the diagnostic accuracy and efficiency of assessing intrathecal immunoglobulin G (IgG) synthesis. METHODS: In this retrospective study (n = 1709), an ensemble model was developed using 8 refined CSF and serum parameters. Combining optimized CatBoost, XGBoost, and LightGBM classifiers, the model was trained and evaluated using a 2-phase workflow, including 5-fold cross-validation and validation on independent internal (n = 342) and external (n = 49) cohorts. RESULTS: The developed ensemble model achieved a receiver operating characteristic-area under the curve (ROC-AUC) of 0.902 on the internal test set, significantly outperforming the conventional IgG index (ROC-AUC, 0.795). At its optimal threshold, the model demonstrated an accuracy of 0.830, with a sensitivity of 0.714 and a specificity of 0.916. On the external validation cohort, it achieved 90% accuracy and 96% sensitivity. CONCLUSIONS: A novel machine learning ensemble model accurately predicts OCB positivity using routine laboratory data and demonstrates superior performance compared with the IgG index. This approach represents a significant step in applying artificial intelligence in laboratory medicine, with the potential to enhance diagnostic efficiency. Prospective, multicenter validation is essential for broader clinical implementation. © The Author(s) 2025.Conference Object Machine Learning-Based Antenna Selection and Secrecy Capacity Analysis(Institute of Electrical and Electronics Engineers Inc., 2025) Erdurak, Burak; Erdoǧan, Eylem; Gürkan, FilizThe performance of machine learning methods was analyzed to optimize antenna selection in wireless communication systems, and system's secrecy performance was observed. To enhance the antenna selection process, Deep Neural Networks (DNNs), Convolutional Neural Networks (CNNs), and the KNearest Neighbors (KNN) algorithm were utilized. Channel vectors were used as model inputs, aiming to select the most optimal transmission path among N possible candidates. During the training phase, the antenna with the highest Signal-to-Noise Ratio (SNR) was selected for data labeling. The performance of Single-Input Multiple-Output (SIMO), Multiple-Input SingleOutput (MISO), and Multiple-Input Multiple-Output (MIMO) system architectures was evaluated using model accuracy and the F1-score. Additionally, the secrecy capacity corresponding to the selected antennas was computed, demonstrating the feasibility of secure communication. The results indicate that deep learningbased methods achieved higher accuracy, with the CNN model emerging as the most successful approach, reaching an accuracy of over 95% across all system configurations. © 2025 Elsevier B.V., All rights reserved.Conference Object Citation - WoS: 1Konteyner Görüntülerini Kullanarak Hasar Tespiti ve Sınıflandırması(IEEE, 2020) Imamoglu, Zeynep Ekici; Tuglular, Tugkan; Bastanlar, YalinIn the logistics sector, digital transformation is of great importance in terms of competition. In the present case, container warehouse entry / exit operations are carried out manually by the logistics personnel including container damage detection. During container warehouse entry / exit process, the process of detecting damaged containers is carried out by the personnel and several minutes are required to upload to the IT system. The aim of our work is to automate the detection of damaged containers. This way, the mistakes made by the personnel will be eliminated and the process will be accelerated. In this work, we propose to use a convolutional neural network (CNN) that takes the container images and classify them as damaged or undamaged. We modeled the problem as a binary classification and employed different CNN models. The result we obtained shows that there is no single best method for the classification. It is shown how the dataset was created and how the parameters used in the layered structures affect the models employed in this study.Conference Object Citation - WoS: 3Citation - Scopus: 8Distinguishing Between Microrna Targets From Diverse Species Using Sequence Motifs and K-Mers(SCITEPRESS, 2017) Yousef, Malik; Khalifa, Waleed; Acar, İlhan Erkin; Allmer, JensA disease phenotype is often due to dysregulation of gene expression. Post-translational regulation of protein abundance by microRNAs (miRNAs) is, therefore, of high importance in, for example, cancer studies. MicroRNAs provide a complementary sequence to their target messenger RNA (mRNA) as part of a complex molecular machinery. Known miRNAs and targets are listed in miRTarBase for a variety of organisms. The experimental detection of such pairs is convoluted and, therefore, their computational detection is desired which is complicated by missing negative data. For machine learning, many features for parameterization of the miRNA targets are available and k-mers and sequence motifs have previously been used. Unrelated organisms like intracellular pathogens and their hosts may communicate via miRNAs and, therefore, we investigated whether miRNA targets from one species can be differentiated from miRNA targets of another. To achieve this end, we employed target information of one species as positive and the other as negative training and testing data. Models of species with higher evolutionary distance generally achieved better results of up to 97% average accuracy (mouse versus Caenorhabditis elegans) while more closely related species did not lead to successful models (human versus mouse; 60%). In the future, when more targeting data becomes available, models can be established which will be able to more precisely determine miRNA targets in hostpathogen systems using this approach.