Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 8Citation - Scopus: 9Dementia diagnosis by ensemble deep neural networks using FDG-PET scans(Springer, 2022) Yiğit, Altuğ; Baştanlar, Yalın; Işık, ZerrinDementia is a type of brain disease that affects the mental abilities. Various studies utilize PET features or some two-dimensional brain perspectives to diagnose dementia. In this study, we have proposed an ensemble approach, which employs volumetric and axial perspective features for the diagnosis of Alzheimer’s disease and the patients with mild cognitive impairment. We have employed deep learning models and constructed two disparate networks. The first network evaluates volumetric features, and the second network assesses grid-based brain scan features. Decisions of these networks were combined by an adaptive majority voting algorithm to create an ensemble learner. In the evaluations, we compared ensemble networks with single ones as well as feature fusion networks to identify possible improvement; as a result, the ensemble method turned out to be promising for making a diagnostic decision. The proposed ensemble network achieved an average accuracy of 91.83% for the diagnosis of Alzheimer’s disease; to the best of our knowledge, it is the highest diagnosis performance in the literature.Article Citation - WoS: 3Citation - Scopus: 6Improved Cell Segmentation Using Deep Learning in Label-Free Optical Microscopy Images(TÜBİTAK - Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, 2021) Ayanzadeh, Aydın; Yalçın Özuysal, Özden; Pesen Okvur, Devrim; Önal, Sevgi; Töreyin, Behçet Uğur; Ünay, DevrimThe recently popular deep neural networks (DNNs) have a significant effect on the improvement of segmentation accuracy from various perspectives, including robustness and completeness in comparison to conventional methods. We determined that the naive U-Net has some lacks in specific perspectives and there is high potential for further enhancements on the model. Therefore, we employed some modifications in different folds of the U-Net to overcome this problem. Based on the probable opportunity for improvement, we develop a novel architecture by using an alternative feature extractor in the encoder of U-Net and replacing the plain blocks with residual blocks in the decoder. This alteration makes the model superconvergent yielding improved performance results on two challenging optical microscopy image series: a phase-contrast dataset of our own (MDA-MB-231) and a brightfield dataset from a well-known challenge (DSB2018). We utilized the U-Net with pretrained ResNet-18 as the encoder for the segmentation task. Hence, following the modifications, we redesign a novel skip-connection to reduce the semantic gap between the encoder and the decoder. The proposed skip-connection increases the accuracy of the model on both datasets. The proposed segmentation approach results in Jaccard Index values of 85.0% and 89.2% on the DSB2018 and MDA-MB-231 datasets, respectively. The results reveal that our method achieves competitive results compared to the state-of-the-art approaches and surpasses the performance of baseline approaches.Article Citation - WoS: 43Citation - Scopus: 47Semantic Segmentation of Outdoor Panoramic Images(Springer, 2021) Orhan, Semih; Baştanlar, YalınOmnidirectional cameras are capable of providing 360. field-of-view in a single shot. This comprehensive view makes them preferable for many computer vision applications. An omnidirectional view is generally represented as a panoramic image with equirectangular projection, which suffers from distortions. Thus, standard camera approaches should be mathematically modified to be used effectively with panoramic images. In this work, we built a semantic segmentation CNN model that handles distortions in panoramic images using equirectangular convolutions. The proposed model, we call it UNet-equiconv, outperforms an equivalent CNN model with standard convolutions. To the best of our knowledge, ours is the first work on the semantic segmentation of real outdoor panoramic images. Experiment results reveal that using a distortion-aware CNN with equirectangular convolution increases the semantic segmentation performance (4% increase in mIoU). We also released a pixel-level annotated outdoor panoramic image dataset which can be used for various computer vision applications such as autonomous driving and visual localization. Source code of the project and the dataset were made available at the project page (https://github.com/semihorhan/semseg-outdoor-pano). © 2021, The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature.Article Citation - WoS: 3Citation - Scopus: 3Elimination of Useless Images From Raw Camera-Trap Data(Türkiye Klinikleri Journal of Medical Sciences, 2019) Tekeli, Ulaş; Baştanlar, YalınCamera-traps are motion triggered cameras that are used to observe animals in nature. The number of images collected from camera-traps has increased significantly with the widening use of camera-traps thanks to advances in digital technology. A great workload is required for wild-life researchers to group and label these images. We propose a system to decrease the amount of time spent by the researchers by eliminating useless images from raw camera-trap data. These images are too bright, too dark, blurred, or they contain no animals To eliminate bright, dark, and blurred images we employ techniques based on image histograms and fast Fourier transform. To eliminate the images without animals, we propose a system combining convolutional neural networks and background subtraction. We experimentally show that the proposed approach keeps 99% of photos with animals while eliminating more than 50% of photos without animals. We also present a software prototype that employs developed algorithms to eliminate useless images.