Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 21Citation - Scopus: 23Engineering of Xylanases for the Development of Biotechnologically Important Characteristics(Wiley, 2023) Sürmeli, Yusuf; Şanlı Mohamed, GülşahXylanases are the main biocatalysts used for the reduction of the xylan backbone from hemicellulose, randomly splitting off β-1,4-glycosidic linkages between xylopyranosyl residues. Xylanase market has been annually estimated at 500 million US Dollars and they are potentially used in broad industrial process ranges such as paper pulp biobleaching, xylo-oligosaccharide production, and biofuel manufacture from lignocellulose. The highly stable xylanases are preferred in the downstream procedure of industrial processes because they can tolerate severe conditions. Almost all native xylanases can not endure adverse conditions thus they are industrially not proper to be utilized. Protein engineering is a powerful technology for developing xylanases, which can effectively work in adverse conditions and can meet requirements for industrial processes. This study considered state-of-the-art strategies of protein engineering for creating the xylanase gene diversity, high-throughput screening systems toward upgraded traits of the xylanases, and the prediction and comprehensive analysis of the target mutations in xylanases by in silico methods. Also, key molecular factors have been elucidated for industrial characteristics (alkaliphilic enhancement, thermal stability, and catalytic performance) of GH11 family xylanases. The present review explores industrial characteristics improved by directed evolution, rational design, and semi-rational design as protein engineering approaches for pulp bleaching process, xylooligosaccharides production, and biorefinery & bioenergy production.Article Citation - WoS: 77Citation - Scopus: 95Thermal, Daylight, and Energy Potential of Building-Integrated Photovoltaic (bipv) Systems: a Comprehensive Review of Effects and Developments(Elsevier, 2023) Taşer, Aybüke; Kundakçı Koyunbaba, Başak; Kazanasmaz, Zehra TuğçeAccording to energy consumption data of the European Union, buildings account for 40 % of overall energy consumption in all sectors. The rise in building energy demand seriously affects global warming. To reduce demand, buildings must be designed to be energy-efficient. As part of energy-efficiency initiatives, unique systems that employ renewable energy sources should be implemented in buildings. As a new technology, building-integrated photovoltaics is considered an essential technology to achieve this target. Several variables affect the thermal, daylight, and energy performance of building-integrated photovoltaic systems; related to environmental and photovoltaic-related parameters. Thus, the challenges and effects of these variables on the overall performance of these systems should be investigated. This research analyzes building-integrated photovoltaic implemented studies and presents a state-of-art review of recent developments. The study not only summarizes the existing studies developed in this field so far but also analyzes the variables and makes concrete generalizations and inferences. It enables finding gaps and deficiencies in the literature and provides a better understanding of all the variables that affect the performance of building-integrated photovoltaic systems by interpreting the results in detail and representing them graphically instead of only through textual analysis. Results show that building-integrated photovoltaics contribute to constructing a sustainable future for cities. Developments in this industry motivate researchers in this field, whose work will make it easier to cope with future ecological challenges. It helps to build a more sustainable future for society. With new developments, it will be possible to mitigate the effects of future environmental problems.Article Citation - WoS: 2Citation - Scopus: 2Tuning the Solid Phase Fluorescence Emission From Long Wavelength Visible To Near-Infrared in Oxazol-5 Derivatives: Structure–property Relationship, Theoretical and Experimental Studies(Springer, 2023) Nazlı, İbrahim Hanif; Yakalı, Gül; Topkaya, Derya; İzmirli, Merve; Uzun, Sema Demirci; Alp, SerapMost of the fluorescent molecules among organic π-conjugated materials show blue or green emission in the solid phase but few of them emit red-shifted visible and near-infrared light in the material science. To create molecules emitting for this feature, two π-conjugated oxazol-5-one derivatives containing donor (OCH3) and acceptor groups (NO2) were synthesized. Their optical and charge-transport properties were investigated through experimental and theoretical methods including the single crystal X-ray crystallography, Hirshfeld Surface Analysis, photophysical studies and Density Functional Theory (DFT), respectively. In addition, FT-IR, 1H-NMR, 13C-NMR spectroscopy, cyclic voltammetry (CV) measurements were performed. According to our results, both molecules may provide the significant pathway of development of long wavelength visible and red emissive features in solid phase with the aggregation induced enhanced emission (AIEE) properties particularly in the fields of OLEDs, optical communication, defence and bioimaging.Article Citation - WoS: 9Citation - Scopus: 9Fabrication and Development of a Microfluidic Paper-Based Immunosorbent Assay Platform (μpisa) for Colorimetric Detection of Hepatitis C(Royal Society of Chemistry, 2023) Özefe, Fatih; Arslan Yıldız, AhuPaper-based microfluidics is an emerging analysis tool used in various applications, especially in point-of-care (PoC) diagnostic applications, due to its advantages over other types of microfluidic devices in terms of simplicity in both production and operation, cost-effectiveness, rapid response time, low sample consumption, biocompatibility, and ease of disposal. Recently, various techniques have been developed and utilized for the fabrication of paper-based microfluidics, such as photolithography, micro-embossing, wax and PDMS printing, etc. In this study, we offer a fabrication methodology for a microfluidic paper-based immunosorbent assay (μPISA) platform and the detection of Hepatitis C Virus (HCV) was carried out to validate this platform. A laser ablation technique was utilized to form hydrophobic barriers easily and rapidly, which was the major advantage of the developed fabrication methodology. The characterization of the μPISA platform was performed in terms of micro-channel properties using bright-field (BF) microscopy, and surface properties using scanning electron microscopy (SEM). At the same time, sample volume and liquid handling capacity were analyzed quantitatively. Ablation speed (S) and laser power (P) were optimized, and it was shown that one combination (10P60S) provided minimal deviation in micro-channel dimensions and prevented deterioration of hydrophobic barriers. Also, the minimum hydrophobic barrier width, which prevents cross-barrier bleeding, was determined to be 255.92 ± 10.01 μm. Furthermore, colorimetric HCV NS3 detection was implemented to optimize and validate the μPISA platform. Here, HCV NS3 in both PBS and human blood plasma was successfully detected by the naked eye at concentrations as low as 1 ng mL−1 and 10 ng mL−1, respectively. Moreover, the limit of detection (LoD) values for HCV NS3 were acquired as 0.796 ng mL−1 in PBS and 2.203 ng mL−1 in human blood plasma with a turnaround time of 90 min. In comparison with conventional ELISA, highly sensitive and rapid HCV NS3 detection was accomplished colorimetrically on the developed μPISA platform.Article Citation - WoS: 3Citation - Scopus: 4Development of Textured Lead-Free Nbt-Based Piezoelectric Materials in a Matrix, Synthesized by an Alternative Route, Via Templated Grain Growth(Springer, 2023) Çoban Tetik, Hatice Şule; Suvacı, Ender; Avcı, A. Murat; Adem, Umut; Karakaya, MerveIn this study, (1−x)(K0.5Bi0.5TiO3-BaTiO3)−xNa0.5Bi0.5TiO3 KBT:BT = 2:1 where x = 0.8 (KBT-BT-NBT) (001) textured lead-free piezoelectric ceramics were fabricated using BT template by templated grain growth with tape casting. Unlike the commonly used matrix preparation method, which is the calcination of all raw materials in one step, the matrix phase was prepared in a different way by first preparing KBT, BT and NBT powders separately and then by calcining the mixtures of these powders, so that effect of the matrix, synthesized by this alternative route, on texture development properties was evaluated. In addition, the effect of BT template content on the grain orientation with different sintering temperature and time, structure evolution, phase stability and piezoelectric properties were investigated to assess the materials’ actuating performance. The highest Lotgering factor of 81% was achieved for the textured ceramics with 10 wt% BT templates sintered at 1150 °C for 48 h. Compared to the one-step synthesis method, similar Lotgering factor values were obtained at lower sintering temperatures in the matrix, synthesized by the alternative 2-step method. The highest piezoelectric constant, remnant polarization, strain value and depolarization temperature were also obtained from the same sample, as ~ 190 pC/N, 30 kV/cm, 25% at 50 kV/cm and ~ 165 °C, respectively. The results show that the textured, lead free K0.5Bi0.5TiO3-BaTiO3-Na0.5Bi0.5TiO3 (KBT-BT-NBT) ceramics that are developed by using the matrix, synthesized by the alternative 2-step method, can be very promising lead-free electroceramics for high performance actuator applications.Article Citation - WoS: 1Citation - Scopus: 1Influence of Processing Method of Cocrmo Dental Alloy on the Corrosion Behavior in Artificial Saliva(Wiley, 2022) Pontes, Joana R.; Pinto, Ana M. P.; Ariza, Edith; Alves, Alexandra C.; Toptan, FatihRemovable or fixed dental frameworks are usually made of CoCr alloys. The CoCr dental alloys are produced traditionally by lost-wax casting. However, alternative processing routes, such as hot-pressing, are being studied for dental applications. The purpose of the present work was to assess the corrosion resistance of CoCrMo dental alloy produced by conventional lost-wax casting and hot-pressing. The corrosion behavior was studied in artificial saliva at 37°C by potentiodynamic polarisation tests. Immersion tests were performed to evaluate the growth of the passive film where electrochemical impedance spectroscopy was used at different immersion periods. Results showed slightly better corrosion resistance in terms of ipass for CoCrMo samples obtained by hot-pressing. On the other hand, the immersion tests showed a more stable and thicker passive film formed on hot-pressed CoCrMo dental alloy, pointing out that hot-pressing may be considered a promising technique to produce CoCrMo dental structures.Article Soft Error Vulnerability Prediction of Gpgpu Applications(Springer, 2022) Topçu, Burak; Öz, IşılAs graphics processing units (GPUs) evolve to offer high performance for general-purpose computations in addition to inherently fault-tolerant graphics applications, soft error reliability becomes a significant concern. Fault injection provides a method of evaluating the soft error vulnerability of target programs. Since performing fault injection experiments for complex GPU hardware structures takes impractical times, the prediction-based techniques to evaluate the soft error vulnerability of general-purpose GPU (GPGPU) programs based on metrics from different domains get crucial for both HPC developers and GPU vendors. In this work, we propose machine learning (ML)-based prediction frameworks for the soft error vulnerability evaluation of GPGPU programs. We consider program characteristics, hardware usage and performance metrics collected from the simulation and the profiling tools. While we utilize regression models to predict the masked fault rates, we build classification models to specify the vulnerability level of the GPGPU programs based on their silent data corruption (SDC) and crash rates. Our prediction models achieve maximum prediction accuracy rates of 95.9, 88.46, and 85.7% for masked fault rates, SDCs, and crashes, respectivelyArticle Citation - WoS: 3Citation - Scopus: 3Computation Time Reduction of Pcm Melting Process by Changing Modeling Parameters(Taylor & Francis, 2022) Demirkıran, İsmail Gürkan; Çetkin, ErdalThis study can be considered as a helpful reference for whom endeavor to boost the computation efficiency of the PCM melting process. Researchers sacrifice accuracy to decrease computation time since computational fluid dynamics (CFD) solutions of PCM melting processes require comparatively very long time, i.e., from hours to days or weeks, depending on the system geometry. The present study compares the approaches recommended in the literature in terms of their influence on computation time reduction and accuracy. A horizontally finned tube LHTES unit is modeled in 2-D space using ANSYS Fluent, the most common commercial CFD software for the considered problem in the literature. The outcomes obtained from the attempts to boost the computation efficiency are as follows: adaptive time step size approach causes 72% enhancement in computation time (from 90 hours to 25 hours), frozen flux algorithm and constant thermophysical properties have almost no influence on computation time. Even though low convergence criteria and neglecting natural convection reduces computation time drastically, the errors in accuracy are not in acceptable level.Article Citation - WoS: 7Citation - Scopus: 10The Computational Approach To Predicting Wear: Comparison of Wear Performance of Cfr-Peek and Xlpe Liners in Total Hip Replacement(Taylor & Francis, 2022) Alpkaya, Alican Tuncay; Mihçin, ŞenayWear on articulating bearing surfaces is a key factor causing revision in total hip replacement (THR). Wear debris that releases particles from bearing surfaces might result in adverse soft tissue reactions requiring revision surgeries. In this study, a comprehensive computational wear model based on the Archard wear equation was performed to investigate the wear performance under a three-dimensional (3D) physiological gait cycle, mimicking a normal walking condition (5 million cycles). The study shows that the accuracy of the model is highly dependent on the mesh convergence, the wear fraction, and the scaling factor. The simulations were run to provide a vast amount of detail for the reproducibility of the work. Cobalt chromium (CoCr) on cross-linked polyethylene (XLPE) and CoCr on carbon-fiber-reinforced polyether ether ketone (CFR-PEEK) prototype models were created in silico. The volumetric wear rates for CoCr-on-XLPE were calculated as 0.2989 (Formula presented.) for CoCr head and 21.0271 (Formula presented.) for XLPE liner, while for CoCr-on-CFR-PEEK they were 0.3484 (Formula presented.) for CoCr head and 1.8476 (Formula presented.) for CFR-PEEK liner. When compared to in vivo and in vitro studies, the wear patterns of these two prototypes are consistent with those of the conventional polyethylene liners in the literature. Although the volumetric wear rate of the CFR-PEEK liner is about 11 times lower than the counterpart of XLPE in MoP implants, the wear rate of CoCr was higher when compared to its use with XLPE. Therefore, CFR-PEEK articulating against orthopa\edic metals may not be as good an alternative as XLPE, due to higher indicative metallic wear. This detailed computational wear modeling methodology could be utilized in design improvements of implants.Article Citation - WoS: 2Citation - Scopus: 1Effects of Electrospraying Parameters on Deposition of La0.3sr0.7fe0.7cr0.3o3−δ Cathode Layer on Gdc(Wiley, 2022) Akkurt, Sedat; Sındıraç, Can; Özmen Egesoy, Tuğçe; Atıcı, Gökçe; Erişman, Elif; Erğen, Emre; Büyükaksoy, AligülHigh performance in intermediate temperature solid oxide fuel cells requires improvements especially in the microstructure of the cathode layer. New cobalt-free cathode materials are used because cobalt-containing cathodes have higher thermal expansion coefficients, poor long-term chemical stability, and lower mechanical stability. Recently cobalt-free cathodes have been proposed to solve these issues by using deposition methods other than electrospray deposition (ESD). In this study, ESD method is used to develop a cobalt-free cathode layer. The electrolyte layer is gadolinium-doped ceria that is deposited with La0.3Sr0.7Fe0.7 Cr0.3O3−δ (LSFCr) prepared by 2-butoxyethanol and ethylene glycol solvents as opposed to conventional solvents. Experimental ESD parameters are tested at different levels and combinations by applying statistical experimental design methods to optimize the microstructure. Coating deposited as such demonstrated higher electrochemical performance than similar electrodes fabricated by other methods.