Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 30Citation - Scopus: 32Perylene-Embedded Electrospun Ps Fibers for White Light Generation(Elsevier Ltd., 2019) Güner, Tuğrul; Aksoy, Erkan; Demir, Mustafa Muammer; Varlıklı, CananPerylene dyes have been employed in the fabrication of white light due to their superior photophysical properties and relatively easy synthetic methods. However, their molecular aggregation in solid state is one of the main handicaps since it causes deviation in their optical properties and quenches photoluminescence quantum yields (Phi(f)). Investigation of the photophysical properties of a green (PTE), a yellow (PDI) and a new red (DiPhAPDI) emitting perylene derivative in solution, drop-casted films, polystyrene (PS) fibers and PS fibers embedded in poly (dimethyl siloxane) (PDMS) showed that PS:dye fibers prevent aggregation to some extend and allows high Of of dyes. The Of values of PTE, PDI and DiPhAPDI were all higher than 93.0% in solution and 84.8%, 94.3% and 73.6%, respectively in PS:dye fibers. Embedding the fibers in PDMS improved the photostabilities of the dyes two folds compared to their solution phases. The prepared dye containing fibers were combined together into a single PDMS film and utilized as a frequency conversion layer on a blue LED. Fabricated samples were found to show high color rendering index (>= 90), adjustable CCT (7500 K-5000 K), and power efficiency values exceeding 2001m/W depending on the used fiber amount in mass.Article Citation - WoS: 66Citation - Scopus: 71Signature of an Aggregation-Prone Conformation of Tau(Nature Publishing Group, 2017) Eschmann, Neil A.; Georgieva, Elka R.; Ganguly, Pritam; Borbat, Peter P.; Rappaport, Maxime D.; Akdoğan, Yaşar; Freed, Jack H.; Shea, Joan-Emma; Han, SongiThe self-assembly of the microtubule associated tau protein into fibrillar cell inclusions is linked to a number of devastating neurodegenerative disorders collectively known as tauopathies. The mechanism by which tau self-assembles into pathological entities is a matter of much debate, largely due to the lack of direct experimental insights into the earliest stages of aggregation. We present pulsed double electron-electron resonance measurements of two key fibril-forming regions of tau, PHF6 and PHF6∗, in transient as aggregation happens. By monitoring the end-to-end distance distribution of these segments as a function of aggregation time, we show that the PHF6 (∗) regions dramatically extend to distances commensurate with extended β-strand structures within the earliest stages of aggregation, well before fibril formation. Combined with simulations, our experiments show that the extended β-strand conformational state of PHF6 (∗) is readily populated under aggregating conditions, constituting a defining signature of aggregation-prone tau, and as such, a possible target for therapeutic interventions.Article Citation - WoS: 1Citation - Scopus: 2Structural and Functional Characterization of Solution, Gel, and Aggregated Forms of Trypsin in Organic Solvent-Assisted and Ph-Induced Phase Changes(Türk Biyokimya Derneği, 2015) Ceylan, Çağatay; Karaçiçek, BilgeIn this study the effect of three different physicochemical parameters on pHtriggered gelation and aggregation of bovine pancreatic trypsin changes and structural and functional changes in these changes in alcohol-water mixtures were studied. Methods: Trypsin gelation times were studied using inverted tube method. Trypsin stability was studied using trypsin enzyme assay. Protein secondary structural changes were monitored using FTIR spectroscopy. Gel and aggregate macrostructures and morphologies were viewed using Scanning Electron Microscopy. Results: The solution phase was observed in the absence of both NaOH and CaCl2. The gel phase was observed in the absence of the either. The aggregate phase was observed in the presence of the both agents all depending on trypsin concentrations used. Trypsin stability studies showed that there were a nearly 53 and 32% specific activity losses after the gelation and aggregation processes. According to FTIR studies β–sheet structure in 1637 cm-1 band disappeared in trypsin gel and trypsin aggregates. Increases in α–helix structure in 1651 cm-1 in trypsin gel and aggregates were observed. Iodoacetamide delayed the gelation and prevented the aggregation indicating the importance of intermolecular disulfides in the both processes. Conclusion: Trypsin gelation was caused by the denaturation of the protein three dimensional structures. The gel and aggregate formation indicates a secondary structural change towards α–helix structure formation at the expense of β–sheet structure and formation of intermolecular disulfide bonds.Article Citation - WoS: 15Aggregation of Fillers Blended Into Random Elastomeric Networks: Theory and Comparison With Experiments(John Wiley and Sons Inc., 2006) Demir, Mustafa Muammer; Menceloğlu, Yusuf Ziya; Erman, BurakA theoretical model describing aggregation of filler particles in amorphous elastomers is proposed. The model is based on a counting technique originally used in genome analysis to characterize the size and distribution of overlapping segments randomly placed on a DNA molecule. In the present model, the particles are first assumed to aggregate randomly upon mixing into the elastomer and then-sizes are calculated. The sizes and distributions of aggregates are also studied in the presence of attractive interparticle forces. Results of the proposed model are compared with experimental data on silica-filled end-linked poly(dimethyl-siloxane) networks. Comparison of the theory and experiment shows that the random aggregation assumption where no attractive forces exist between the particles is not valid and a significant attraction between the silica particles is needed in the theory to justify the experimental data obtained using atomic force microscopy. For filler content below 1.45 vol.-%, the model agrees, qualitatively, with experiment and shows the increase in cluster size with increasing amount of filler. It also explains the increase in the dispersion of aggregate sizes with increasing amount of filler.Article Citation - WoS: 198Citation - Scopus: 210Physical and Chemical Interactions in Coal Flotation(Elsevier Ltd., 2003) Polat, Mehmet; Polat, Hürriyet; Chander, SubhashCoal flotation is a complex process involving several phases (particles, oil droplets and air bubbles). These phases simultaneously interact with each other and with other species such as the molecules of a promoting reagent and dissolved ions in water. The physical and chemical interactions determine the outcome of the flotation process. Physical and chemical interactions between fine coal particles could lead to aggregation, especially for high rank coals. Non-selective particle aggregation could be said to be the main reason for the selectivity problems in coal flotation. It should be addressed by physical (conditioning) or chemical (promoters) pretreatment before or during flotation. Although the interactions between the oil droplets and coal particles are actually favored, stabilization of the oil droplets by small amounts of fine hydrophobic particles may lead to a decrease in selectivity and an increase in oil consumption. These problems could be remedied by use of promoters that modify the coal surface for suitable particle-particle, droplet-particle and particle-bubble contact while emulsifying the oil droplets. The role of promoters may be different for different types of coals, however. They could be employed as modifiers to increase the hydrophobicity of low rank coals whereas their main role might be emulsification and aggregation control for high rank coals. In this paper, a detailed description of the various phases in coal flotation, their physical and chemical interactions with each other in the flotation pulp, the major parameters that affect these interactions and how these interactions, in turn, influence the flotation process are discussed.