Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection

Permanent URI for this collectionhttps://hdl.handle.net/11147/7148

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  • Conference Object
    A General Predictive Model to Evaluate Daylight Levels of Residential Buildings in the Mediterranean (Next Med) Region
    (Education and Research in Computer Aided Architectural Design in Europe, 2025) Ekici, B.
    Conceptual design is one of the most critical phases, as design decisions affect the buildings’ performance throughout their life cycle. Researchers consider various computational methods to achieve effective design proposals. Nevertheless, optimization algorithms are necessary to cope with the complexity and increase the efficiency of design alternatives in various aspects. In sustainable building design, these decisions require computationally expensive processes due to the simulation tasks. Besides, making sustainable design decisions is even more challenging in a Mediterranean climate due to changing conditions throughout the year. Therefore, recent studies frequently consider combining predictive models with optimization algorithms to decrease the burden of expensive simulation time. Relevant works present promising outcomes, yet they are limited to predicting the building performance of specific cases; thus, the proposed predictive models are limited to different design problems. This paper investigates the development of a general machine learning (ML) model to overcome this issue. With this motivation, a parametric test box consisting of twenty parameters related to weather data of twelve Mediterranean (Next Med) countries, space dimensions, vertical/horizontal louvers, and material type is developed using Grasshopper 3d. Moreover, a parametric urban model, which considers eight parameters related to the density of the surrounding buildings, is also created to generate numerous environments. The LadyBug tools simulate the daylight autonomy to generate 12,000 samples. Five different ML models involving artificial neural networks (ANN) are built in Python. Statistical results showed that train and test scores achieved promising outcomes in all ML models. However, when predicting user-defined scenarios not involved in the generated dataset, only ANNs perform generalizable, accurate predictions. The paper discusses the ability of ANN models to accurately predict different design scenarios and locations, and the trustworthiness of the training and test scores based only on collected data. © 2025, Education and research in Computer Aided Architectural Design in Europe. All rights reserved.
  • Article
    AI-Supported Seismic Performance Evaluation of Structures: Challenges, Gaps, and Future Directions at Early Design Stages
    (Elsevier Sci Ltd, 2026) Ak, Fatma; Ekici, Berk; Demir, Ugur
    This study reviews 91 journal articles that intersect with earthquake-resistant building design and artificial intelligence (AI)- based modeling, utilizing machine learning, deep learning, and metaheuristic optimization algorithms. Previous reviews on AI applications have examined engineering problems without considering the impact of architectural design parameters and structural irregularities on seismic performance. This review discusses the role of AI in integrating architectural design variables and seismic performance objectives, highlighting challenges, gaps, and future directions in the early design phase. The reviewed articles demonstrate that AI is successful in addressing seismic performance objectives; however, a holistic framework for assessing architectural and structural variables has not been presented. The review highlights key findings, gaps, and future directions for those involved in earthquake-resistant building design utilizing AI.
  • Article
    Artificial Intelligence for Improving Thermal Comfort through Envelope Design in Residential Buildings: Recent Developments and Future Directions
    (Elsevier Science Sa, 2026) Bayraktar, Arda; Ekici, Berk
    Envelopes are vital components for improving thermal comfort in almost all building typologies. Yet, the design and analysis of envelopes are complex, as they involve multiple aspects and various parameters, ensuring comfort standards. Improving thermal comfort in residential buildings is within the scope of researchers to suggest sustainable design alternatives that consider multiple performance aspects and design parameters. Previous review articles have focused on improving thermal performance in residential buildings from the perspective of envelope technology, materials, and design strategies. However, none of them investigated current developments using artificial intelligence (AI), which inevitably supports decision-making in complex circumstances for a sustainable built environment. This review examines the contribution of AI methods, which consist of metaheuristic optimization and machine learning algorithms as sub-branches, to envelope parameters. The paper systematically reviews 95 relevant works on AI, including early approaches, to provide a comprehensive overview of current developments, following PRISMA guidelines. The results showed that early applications considered conventional approaches to improve thermal comfort and energy performance, which mostly limit the results to specified cases. On the other hand, studies utilizing AI methods dealt with numerous parameters, allowing them to cope with complex envelope systems in a reasonable amount of time. The study addresses relevant research questions related to the trends, research methods, system types, AI methods, data types, and their relation to performance and envelope parameters. The study also provides actionable insight, underlining gaps and future works for utilizing machine learning methods in the reviewed research domain.
  • Conference Object
    Developing Machine Learning Models to Predict Outdoor Thermal Comfort of Kinetic Shading Devices: An Approach for Global Optimization
    (Education and Research in Computer Aided Architectural Design in Europe, 2025) Dağlier, Y.; Ekici, B.; Korkmaz, K.
    Utilizing artificial intelligence (AI) methods in the design process supports the achievement of sustainable alternatives during the conceptual design. In various AI methods, optimization and machine learning (ML) algorithms are the most common methods to develop predictive models and discover favorable design alternatives with significantly reduced computational time. Recent works focused on limited datasets, as well as the evaluation of the developed prediction models based on collected data. During the optimization process of complex design problems, the number of design parameters becomes enormous; thus, search areas contain many design alternatives that might lead the search outside of the collected data. Therefore, evaluating the accuracy of prediction models only based on the collected samples may result in scenarios where the predicted outcome during the optimization process aligns with an unrealistic solution. This study investigates how accurately prediction models developed using different ML algorithms can perform in optimization processes. The proposed framework is used to cope with outdoor thermal performance, considering kinetic shading devices with rigid origami techniques. A parametric shading device model with kinematic principles and 10 design parameters is created in Grasshopper 3d. LadyBug is used to analyze the performance of the universal thermal climate index (UTCI). To minimize the UTCI, the radial basis function optimization (RBFOpt) algorithm in the Opossum plugin is used. To compare the optimization results with the prediction results, multiple linear regression, support vector machines, random forest, polynomial regression algorithms, and artificial neural networks (ANN) are developed to predict outdoor thermal comfort performance targets on each collected data set with 2000 samples. Results showed that ANN models can provide more accurate predictions during the optimization process. The paper aims to discuss the way ML algorithms are applied and evaluated for ML-based optimization domains in design problems. © 2025, Education and research in Computer Aided Architectural Design in Europe. All rights reserved.
  • Article
    A Machine Learning Framework for Advanced Analytical Detection of CD36 Using Immunosensors Below Limit of Detection
    (Elsevier Ltd, 2026) Yeke, M.C.; Gelen, S.S.; Fil, H.; Yalcin, M.M.; Gumus, A.; Yazgan, I.; Odaci, D.
    We introduce a machine learning (ML)-based regression framework for quantitative electrochemical analysis, representing a paradigm shift from traditional univariate methods to a multivariate approach. Conventional analysis is constrained by reducing the entire signal to a single peak current feature to define a linear range and calculate a limit of detection (LOD). In contrast, our methodology treats the Differential Pulse Voltammetry (DPV) curve as time-series data, creating a high-dimensional fingerprint by systematically evaluating multiple data windows with varying widths around the main signal peak to identify the most informative segment. To validate this approach, a biosensor was developed by immobilizing Anti-CD36 antibodies on polydopamine-modified screen-printed carbon electrodes for the detection of CD36, a key protein in metabolism and immunity. Measurements were collected across 12 concentrations, including blank samples, spanning a range of 0 to 25 ng/mL. Following data augmentation, nine different regression models were evaluated, with the top-performing models achieving near-perfect prediction accuracy (R2>0.99) across this entire range. This high accuracy across the full concentration spectrum quantitatively demonstrates the method's ability to operate without relying on traditional concepts like linear range or LOD, enabling reliable detection at ultra-low levels. Furthermore, the immunosensor exhibited high selectivity against common interferents and excellent recovery in human serum. This methodology represents a significant advancement in analytical electrochemistry, providing a transferable approach for enhancing sensitivity in biomarker detection with potential applications in clinical diagnostics and biomedical research. The codes and dataset are made publicly available on GitHub to support further research: https://github.com/miralab-ai/biosensors-AI. © 2026 The Author(s)
  • Article
    Development and Validation of Regression Model via Machine Learning to Estimate Thermal Conductivity and Heat Flow Using Igneous Rocks from the Dikili-Bergama Geothermal Region, Western Anatolia
    (Pergamon-Elsevier Science Ltd, 2026) Ayzit, Tolga; Sahin, Onur Gungor; Erol, Selcuk; Baba, Alper
    Thermal conductivity is a fundamental parameter that significantly influences the thermal regime of the lithosphere. It plays a crucial role in a variety of geological applications, including geothermal energy exploration, igneous system assessment, and tectonic modeling. In this study, a machine learning approach is used to predict the thermal conductivity of igneous rocks based on the composition of major oxides. A total of 488 samples from different regions of the world were analyzed. The thermal conductivity values ranged from 1.20 to 3.74 Wm(-1) K-1 and the mean value was 2.61 Wm(-1) K-1. The Random Forest (RF) algorithm was used, resulting in a high coefficient of determination (R-2 = 0.913 for training and R-2 = 0.794 for testing) and a root mean square error (RMSE) of 0.112 and 0.179, respectively. Significance analysis of the traits identified SiO2 (>40 %), Na2O (>15 %) and Al2O3 (>10 %) as the most influential predictors. The study presented results from the Western Anatolia region, where felsic rocks had the highest thermal conductivity (mean = 2.69 Wm(-)(1)K(-)(1)) compared to mafic (mean = 2.34 Wm(-)(1)K(-)(1)) and ultramafic rocks (mean = 2.39 Wm(-)(1)K(-)(1)). In addition, the study evaluated the predictive capabilities of machine learning models for the igneous rocks of the Dikili-Bergama region and compared the results with those of saturated models. Using these data, we calculated heat flow values of up to 400 mWm(-2) under saturated conditions in western Anatolia. These results highlight the value of integrating geochemical data with machine learning to improve geothermal resource exploration and lithospheric modeling.
  • Article
    A Knowledge-Driven Computer Vision Framework for Automated Atomic Force Microscopy Surface Characterization
    (Elsevier Science Ltd, 2026) Deveci, D. Gemici; Barandir, T. Karakoyun; Unverdi, O.; Celebi, C.
    This study presents an innovative analytical framework developed to automate Atomic Force Microscopy (AFM)-based surface characterization. The proposed methodology integrates computer vision (CV) algorithms and machine learning (ML) techniques to overcome the limitations of conventional observer-dependent approaches and visual inspection methods. In the first stage of the two-step data processing pipeline, raw AFM signals were converted into structured datasets, correspondences between images acquired under different loading conditions were identified, and drift effects in both direction and magnitude were predicted using a LightGBM-based machine learning (ML) model to guide subsequent analytical processes. This process establishes a unified coordinate reference across varying force levels, enabling pixel-level comparability of surface maps. In the second stage, the aligned datasets are systematically analyzed through block-based local maxima detection, edge-based contour extraction, morphological filtering, and skeletonization algorithms. In this way, ridge-like surface features are reliably identified and quantitatively evaluated along their axes under varying force conditions. The framework ensures data integrity while enabling high-resolution and reproducible analyzes. Beyond its automation capability, it is distinguished by its integrated, modular architecture, where each component operates sequentially along a unified processing pipeline. The methodology was validated using epitaxial monolayer graphene grown on the C-face of SiC, successfully demonstrating its ability to resolve both geometric and force-dependent mechanical responses. In this regard, the proposed system extends beyond conventional cross-sectional analysis by providing a drift-aware, knowledge-guided compensation mechanism and directionally resolved evaluation, offering a robust, automation-ready infrastructure for nanoscale surface characterization.
  • Article
    A Machine Learning Model for Predicting Oligoclonal Band Positivity Using Routine Cerebrospinal Fluid and Serum Biochemical Markers
    (Oxford University Press Inc, 2025) Gözgöz, Hazar; Orhan, Oğuzhan; Akan Konuk, Başak; Akan, Pınar
    OBJECTIVE: To develop and validate a machine learning model for predicting oligoclonal band (OCB) positivity using routine cerebrospinal fluid (CSF) and serum biochemical markers to improve the diagnostic accuracy and efficiency of assessing intrathecal immunoglobulin G (IgG) synthesis. METHODS: In this retrospective study (n = 1709), an ensemble model was developed using 8 refined CSF and serum parameters. Combining optimized CatBoost, XGBoost, and LightGBM classifiers, the model was trained and evaluated using a 2-phase workflow, including 5-fold cross-validation and validation on independent internal (n = 342) and external (n = 49) cohorts. RESULTS: The developed ensemble model achieved a receiver operating characteristic-area under the curve (ROC-AUC) of 0.902 on the internal test set, significantly outperforming the conventional IgG index (ROC-AUC, 0.795). At its optimal threshold, the model demonstrated an accuracy of 0.830, with a sensitivity of 0.714 and a specificity of 0.916. On the external validation cohort, it achieved 90% accuracy and 96% sensitivity. CONCLUSIONS: A novel machine learning ensemble model accurately predicts OCB positivity using routine laboratory data and demonstrates superior performance compared with the IgG index. This approach represents a significant step in applying artificial intelligence in laboratory medicine, with the potential to enhance diagnostic efficiency. Prospective, multicenter validation is essential for broader clinical implementation. © The Author(s) 2025.
  • Article
    Machine Learning Integrated Solvothermal Liquefaction of Lignocellulosic Biomass to Maximize Bio-Oil Yield
    (Elsevier Sci Ltd, 2025) Ocal, Bulutcem; Sildir, Hasan; Yuksel, Asli
    Accelerating consumption of limited fossil-based for economic growth and simultaneously mitigating greenhouse gas emissions create a dilemma that is waiting to be solved by researchers. In this context, solvothermal liquefaction of lignocellulosic biomass to produce bio-oil is a promising way to obtain green energy. However, maximizing bio-oil is challenging to optimize the operating parameters employing conventional techniques due to the complexity and non-linearity of the process. Lately, machine learning approaches have become powerful tools for addressing complex nonlinear problems by predicting process behavior and regulating operating parameters for optimization by learning from datasets. The current research demonstrates integrating experimental and a developed artificial neural network model to optimize solvothermal liquefaction of pinus brutia, based on temperature, water fraction, and biomass amount in maximizing bio-oil generation for the first time. The highest bio-oil yields were obtained at 31.40 %, 18.68 %, and 39.69 %, respectively, with 4 and 8 g biomass in the presence of water, ethanol, and water/ethanol mixture at 240 degrees C. Under the model conditions, the maximum biooil yield was experimentally verified at 46.20%, which was predicted at 48.8 %. Beyond providing accurate yield predictions, the approach highlights the potential of date-driven modeling to reduce experimental workload and cost while aiding parameter selection to improve efficiency. These outcomes emphasize the importance of machine learning integration into liquefaction process, providing remarkable results for future process design, optimization, and scalability. On the other hand, the study also includes characterization results (ultimate, proximate, FTIR, and GC-MS) of selected products and pinus brutia.
  • Article
    Knowledge-Based Training of Learning Architectures Under Input Sensitivity Constraints for Improved Explainability
    (Pergamon-Elsevier Science Ltd, 2026) Sildir, Hasan; Erturk, Emrullah; Edizer, Deniz Tuna; Deliismail, Ozgun; Durna, Yusuf Muhammed; Hamit, Bahtiyar
    The traditional machine learning (ML) training problem is unconstrained and lacks an explicit formulation of the underlying driving phenomena. Such a formulation, based solely on experimental data, does not ensure the delivery of qualitative knowledge among variables due to many theoretical issues in the optimization task. This study further tightens Artificial Neural Networks (ANNs) training by including input sensitivities as additional constraints and applies to regression and classification tasks based on literature data. In theory, such sensitivity represents the change direction of the target variable per change in measurements from indicators. The resulting nonlinear optimization problem is solved th rough a rigorous solver and includes the sensitivity expressions through algorithmic differentiation. Compared to traditional methods, with an acceptable decrease in the prediction capability, the proposed model delivers more intuitive, explainable, and experimentally verifiable predictions under input variable variations, under robustness to overfitting, while serving robust identification tasks. A classification case study includes a patient-oriented clinical decision support system development based on the impact of cancer-indicating variables. A competitive test prediction accuracy is obtained compared to commonly used algorithms despite 10 % decrease in the training. The regression case is built upon the energy load estimation to account for prominent considerations to obtain desired sensitivity patterns and proposed methodology delivers significant accuracy drop compared to some formulations to address knowledge patterns. The approach delivers a compatible pattern with practitioner expertise and is compared to widely used machine learning algorithms, whose performances are evaluated through common statistics in addition to multi-variable response graphs.