Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection

Permanent URI for this collectionhttps://hdl.handle.net/11147/7148

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Author: search.filters.author.Kauffman, Louis H.

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Now showing 1 - 4 of 4
  • Article
    Spatial Graphoids
    (Birkhauser, 2023) Gugumcu, Neslihan; Kauffman, Louis H.; Pongtanapaisan, Puttipong
    To study knotted graphs with open ends arising in proteins, we introduce virtual graphoids, which are virtual spatial graph diagrams with two distinguished degree-one vertices modulo graph Reidemeister moves applied away from the distinguished vertices. Generalizing previously known results, we give topological interpretations of graphoids. By analyzing the Yamada polynomial, we provide bounds for the crossing numbers. As an application, we can produce nontrivial graphoids by verifying that they satisfy adequacy conditions in the same spirit as Lickorish and Thistlethwaite’s notion of adequate links. © 2023, The Author(s), under exclusive licence to Springer Nature Switzerland AG.
  • Article
    Citation - WoS: 8
    Citation - Scopus: 8
    Invariants of Bonded Knotoids and Applications To Protein Folding
    (MDPI, 2022) Güğümcü, Neslihan; Gabrovsek, Bostjan; Kauffman, Louis H.
    In this paper, we study knotoids with extra graphical structure (bonded knotoids) in the settings of rigid vertex and topological vertex graphs. We construct bonded knotoid invariants by applying tangle insertion and unplugging at bonding sites of a bonded knotoid. We demonstrate that our invariants can be used for the analysis of the topological structure of proteins.
  • Article
    Citation - WoS: 7
    Citation - Scopus: 9
    Parity, Virtual Closure and Minimality of Knotoids
    (World Scientific Publishing, 2021) Güğümcü, Neslihan; Kauffman, Louis H.
    In this paper, we study parity in planar and spherical knotoids in relation to virtual knots. We introduce a planar version of the parity bracket polynomial for planar knotoids. We show that the virtual closure map (a map from the set of knotoids in S-2 to the set of virtual knots of genus at most one) is not surjective, by utilizing the surface bracket polynomial of virtual knots. We give specific examples of virtual knots that are not in the image of the virtual closure map. Turaev conjectured that minimal diagrams of knot-type knotoids have zero height. We prove this conjecture by using the results of Nikonov and Manturov induced by parities of virtual knots.
  • Article
    Citation - WoS: 4
    Citation - Scopus: 4
    Quantum Invariants of Knotoids
    (Springer, 2021) Güğümcü, Neslihan; Kauffman, Louis H.
    In this paper, we construct quantum invariants for knotoid diagrams in R-2. The diagrams are arranged with respect to a given direction in the plane (Morse knotoids). A Morse knotoid diagram can be decomposed into basic elementary diagrams each of which is associated to a matrix that yields solutions of the quantum Yang-Baxter equation. We recover the bracket polynomial, and define the rotational bracket polynomial, the binary bracket polynomial, the Alexander polynomial, the generalized Alexander polynomial and an infinity of specializations of the Homflypt polynomial for Morse knotoids via quantum state sum models.