Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 2Citation - Scopus: 2Experimental Integration of Stone Topologies To the Simplified Micro-Modeling for the Seismic Response of Masonry Walls: a Novel Insight(Springer Heidelberg, 2025) Demir, UgurThis study aims to explore the impact of stone typologies on the in-plane seismic behavior of stone masonry buildings. The present study aims to quantify the strength and deformability parameters such as lateral load capacity, ductility, energy dissipation capacity and stiffness degradation of frequently used sandstone and limestone masonry, which will intentionally contribute to the core body of knowledge on their original structural design, seismic safety evaluation and intervention design. The innovative aspect of this research lies in the holistic methodology that integrates field surveys to classify local stone masonry units, experimental characterization of the chemical and mechanical properties of these units to capture variability, and finite element modeling of the in-plane cyclic behavior of stone masonry walls using experimental data. A novel simplified micro-modeling approach is implemented within a standard finite element software, eliminating the need for user-defined subroutines. This approach significantly reduces computational efforts compared to conventional methods, making it particularly suitable for analyzing large-scale stone masonry structures. The study investigates the impact of chemical composition (sandstone or limestone), applied axial stress (0.25 MPa, 0.50 MPa, or 1 MPa), and wall aspect ratios (height-to-length ratios of 1.0 or 1.5) on wall performance. The modeling approach is validated against experimental results from the literature, demonstrating good agreement. Finally, the study assesses wall performance in terms of deformation limits in current seismic codes. The findings provide critical insights for developing innovative design strategies to enhance the structural integrity of stone masonry walls and improve the seismic assessment of existing structures.Article The Future of Urban Hierearchy and Zipf Law: Arima and Bats Forecasting(Springer Heidelberg, 2025) Duran, Hasan EnginZipf's Law is recognized as a power law which is used to identify the extent and the evolution of the urban hierarchies. The existing studies have mostly adopted a retrospective view by analysing the past patterns. However, we would like to shed a light onto the future trajectories. Therefore, the aim of this study is to investigate the future of Urban Hierarchies and Zipf's Law for the U.S. Metropolitan Statistical Areas (MSA) and the period 1969-2070. Having applied, two forecasting methods; i."ARIMA (Autoregressive Integrated Moving Average)", ii. "BATS (Exponential smoothing state space model Box-Cox transformation, ARMA errors, Trend and Seasonal components)" and the estimation of rank-size rule, we obtained crucial conclusions (Box and Jenkins in: Time series analysis: forecasting and control, Holden-Day, San Francisco, 1970; Box et al. in: Time series analysis: forecasting and control, Wiley, New Jersey, 2016; Kinney in Acc Rev 53:48-60, 1978; Hyndman et al. in R package version 8.24.0, https://cran.r-project.org/web/packages/forecast/forecast.pdf, 2025; De Livera in: Automatic forecasting with a modified exponential smoothing state space framework, Department of Econometrics & Business Statistics, Monash University (Working Papers 10/10). https://www.monash.edu/business/econometrics-and-business%20statistics/research/publications/ebs/wp10-10.pdf, 2010; De Livera et al. in: Forecasting time series with complex seasonal patterns using exponential smoothing. (Working paper 15/09), Department of Econometrics & Business Statistics, Monash University. https://robjhyndman.com/papers/ComplexSeasonality.pdf, 2010; De Livera et al. in J Am Stat Assoc 106:1513-1527, 2011). We provide evidence that the Zipf's Law is observed not to hold over the last century and, if existing conditions hold, it is not expected to be valid in the next 50 years. Pareto exponent is found significantly below the Pareto level, historically, currently and prospectively.Article Citation - WoS: 2Citation - Scopus: 1Cross-Linked Carboxymethyl Cellulose Biosorbent for Zinc Removal: a Sustainable Remediation of Heavy Metal-Polluted Waters(Springer Heidelberg, 2025) Celgan, Dilber; Karadag, Asiye; Karim, Barna Jalaluddin Mohammad; Recepoglu, Yasar Kemal; Arar, OzgurThis study focuses on the preparation and characterization of cross-linked carboxymethyl cellulose (CMC) biosorbent for efficient removal of Zn2(+) ions from aqueous solutions. The microstructural features of the biosorbent were examined using scanning electron microscopy (SEM), while elemental analysis was conducted using an elemental analyzer to determine carbon (C), hydrogen (H), nitrogen (N), and sulfur (S) content. Fourier transform infrared (FTIR) spectroscopy was employed to identify functional groups within the biosorbent. Sorption experiments revealed that increasing the biosorbent dose led to higher Zn2(+) removal rates until equilibrium was reached. The optimal pH for Zn2(+) removal was determined to be >= 5, attributed to the conversion of acetate group to its ionic form. Rapid kinetics were observed, with 99% removal achieved within 5 min. The biosorbent exhibited a maximum sorption capacity of 10.809 mg/g and a removal rate of 99% at pH 5. Desorption studies demonstrated efficient Zn2(+) recovery using 0.25 M HCl solution, with a total desorption rate exceeding 99%. The findings indicate the potential for cost-effective regeneration of the biosorbent using dilute acid solutions, enhancing its sustainability and practical applicability in water purification processes. Additionally, the biosorbent's selectivity for Zn2(+) ions over competing ions and its effectiveness in treating real water samples, including those containing Na+, K+, Ca2(+), and Mg2(+), highlight its suitability for practical water purification applications.Article Citation - WoS: 1Citation - Scopus: 1Tracing the Origins: Byzantine Lime Mortars From Anaia and St. Jean Churches (Western Türkiye) and Provenances of Natural Stone Aggregates(Springer Heidelberg, 2025) Aydinalp, Tugce; Uzelli, Taygun; Sagin, Elif UgurluThe aim of this study is to determine the provenances of natural stone aggregates of the lime mortars from the St. Jean and Anaia Churches, which represent two of the most significant Byzantine buildings in Western T & uuml;rkiye. With this aim, the characterization study was conducted to define the physical properties and raw material compositions of lime mortars; hydraulic properties of the binders; mineralogical and chemical compositions, microstructural properties of lime, binders and aggregates; geochemical characteristics and pozzolanic activities of aggregates. The analyses were determined using X-ray diffraction (XRD), scanning electron microscopy coupled with energy dispersive spectroscopy (SEM-EDS), and thermogravimetric analysis (TGA). Furthermore, field observations and analytical studies were paired with the characterization results to determine the possible provenances. Analytical studies demonstrated that natural stone aggregates exhibited highly pozzolanic properties, which imparted hydraulicity to lime mortars. The macrostructure of the natural stone aggregates exhibited angular characteristics and a diverse lithological composition derived from the older brecciated clastics of the Menderes Massif. The fine-grained volcanic matrix of the aggregates was predominantly dacitic or rhyolitic in character, possibly derived from a breccia matrix composed of volcaniclastic materials. The findings suggested that the provenance of the natural stone aggregates were the breccia accumulation regions around Ayasuluk (Sel & ccedil;uk) for the St. Jean Church and S & ouml;ke-Germencik for the Anaia Church. The deliberate selection of natural stone sources to produce hydraulic lime mortars shows a conscious relationship with the surrounding geology during the Byzantine period.Article Numerical Study of Breaching at Upper Parts of Homogenous Earthen Dams(Springer Heidelberg, 2025) Dumlu, Emre; Guney, Mehmet Sukru; Okan, Merve; Ozden, Guerkan; Tayfur, GokmenIn this study, time-dependent finite element analyses of the breaching process in two homogenous earth-fill dams were performed using the finite element method. Breaching was initiated at the middle and corner sections of the upper part of the dam bodies. The numerical results were compared with the findings of the experiments realized on dams 60 cm high, 2 m wide at bottom, 20 cm wide at crest with 1 V:1.5H side slopes at upstream and downstream faces. This numerical study combines time-dependent hydraulic gradient distributions and groundwater flows to assess breach areas, velocities, and flow rates. A Python algorithm was integrated with the Jupyter console, allowing the simulation of the breach mechanism in multiple runs to determine breach parameters. Both numerical and experimental analyses revealed that the dams were exposed to backward erosion, starting at the downstream side of the dam and progressing inward. The compatibility between experimental and numerical results was sought by means of the parameters RMSE, MAE and the statistical performance of the numerical approach was evaluated by using RSR, NSE, and PBIAS. A fairly good agreement was obtained between the experimental and numerical results.Article Citation - WoS: 4Citation - Scopus: 5Diffusion-Based Data Augmentation Methodology for Improved Performance in Ocular Disease Diagnosis Using Retinography Images(Springer Heidelberg, 2024) Aktas, Burak; Ates, Doga Deniz; Duzyel, Okan; Gumus, AbdurrahmanDeep learning models, integral components of contemporary technological landscapes, exhibit enhanced learning capabilities with larger datasets. Traditional data augmentation techniques, while effective in generating new data, have limitations, especially in fields like ocular disease diagnosis. In response, alternative augmentation approaches, including the utilization of generative AI, have emerged. In our study, we employed a diffusion-based model (Stable Diffusion) to synthesize data by faithfully recreating crucial vascular structures in the retina, vital for detecting eye diseases by using the Ocular Disease Intelligent Recognition dataset. Our goal was to augment retinography images for ocular disease diagnosis using diffusion-based models, optimizing the outputs of the fine-tuned Stable Diffusion model, and ensuring the generated data closely resembles real-world scenarios. This strategic approach resulted in improved performance in classification models and augmentation outperformed traditional methods, exhibiting high precision rates ranging from 85% to 76.2% and recall values of 86%, and 75% for 5 classes. Beyond performance enhancement, we demonstrated that the inclusion of synthetic data, coupled with data reduction using the t-SNE method, effectively addressed dataset imbalance. As a result of synthetic data addition, notable increases of 3.4% in the precision metric and 12.8% in the recall metric were observed in the 7-class case. Strategically synthesizing data addressed underrepresented classes, creating a balanced dataset for comprehensive model learning. Surpassing performance improvements, this approach underscores synthetic data's ability to overcome the limitations of traditional methods, particularly in sensitive medical domains like ocular disease diagnosis, ensuring accurate classification. The codes of the study will be shared on GitHub in a way that benefits everyone interested: https://github.com/miralab-ai/generative-data-augmentation.Article Citation - WoS: 3Citation - Scopus: 2Development of Transition Metal Oxide Platforms for Aptasensing of Psa in Cell Cultures(Springer Heidelberg, 2024) Kirlangic, Irem Aydin; Uner, Goklem; Kara, Pinar; Kirmizibayrak, Petek Ballar; Ertas, Fatma NilIn this study, a novel aptasensor based on a transition metal oxide-modified pencil graphite electrode (PGE) was developed for the diagnosis of early-stage prostate cancer (PCa) via monitoring the prostate-specific antigen (PSA), which is the main biomarker for PCa. Single-use PGEs modified with pulsed deposited manganese oxide (MnOx) film were used to attach the amino-terminated aptamer specific to the PSA via carbodiimide chemistry. The designed aptasensor was placed in an electrochemical cell containing ferri/ferrocyanide ions as a redox probe to measure the charge transfer resistances (Rct) of the electrode surface by electrochemical impedance spectroscopy (EIS) to follow the response of each modification step. The effect of the medium pH on the ionic structure of the aptamer molecule according to its pI value and, thus, the reversing of the direction of the response (Delta Rct) by the pH change was also discussed. The level of PSA secreted from PCa cells was investigated using impedimetric transduction. The specificity of the aptasensor was validated through selectivity studies against non-specific tumor markers like VEGF and different cancer cell lines including breast cancer and androgen-insensitive prostate cancer. The developed system showcases a label-free, fast, specific, and cost-effective approach for PSA detection, highlighting the importance of medium pH and the electrostatic environment on the aptamer's response. Our work emphasizes the potential for such aptasensors in clinical diagnostics and paves the way for further exploration into using transition metal oxides in biosensing applications.Article A Methodology Providing New Insights Into the Flow Patterns of Karst Aquifers: an Example From Sw Türkiye(Springer Heidelberg, 2024) Maramathas, Athanasios; Katsanou, Konstantina; Sagir, Cagdas; Baba, Alper; Lambrakis, NikolaosThis paper presents a new and innovative methodology for the investigation of karst systems using spring discharge. The behaviour of springs in phase space is investigated by plotting the measurements of spring discharge versus the measurements of the water level at the spring's outlet. Such a diagram reveals new features of the function of the karst system and the discharge pattern of the spring that are not captured by common research methods. The application of this method to the Azmak Spring in southwestern T & uuml;rkiye revealed the existence of five distinct discharge subsystems that operate alternately and never simultaneously. They have a specific connection between them, while the transition from one to another is not random but follows a pattern. An attempt was made to interpret these features using concepts from percolation theory.Article Citation - WoS: 1Citation - Scopus: 1Calcite Precipitation on Excavated Andesite Surfaces From the Archaeological Sites of Aigai and Assos (turkey)(Springer Heidelberg, 2024) Kaplan, Caglayan Deniz; Boke, HasanThe conservation interventions of crusts or patinas formed on the surfaces of stone monuments should be evaluated within a comprehensive approach in archaeological excavations, taking into account their material characteristics. In this study, the mineralogical, chemical and microstructural characteristics of whitish crusts formed on the surfaces of buried and later excavated andesite surfaces at the archaeological sites of Aigai and Assos (Turkey) were investigated by X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR), X-ray fluorescence (XRF) and scanning electron microscopy coupled with energy dispersive spectroscopy (SEM-EDS) analyses in order to establish a conservation approach at the archaeological sites. The whitish crusts formed on the excavated andesite surfaces are mainly composed of calcite with freshwater diatom species. Calcite is most likely formed by the alteration of plagioclase by carbon dioxide in the soil during the burial of the andesites. In the soil, CO2 reacts with plagioclase to produce kaolinite and calcite which are precipitated on the andesite surfaces after excavation. The presence of freshwater diatom species in the whitish crusts may indicate that the andesite remains were buried in the waterlogged soil for many years and later excavated. Therefore, whitish crusts should not be cleaned from the andesite surfaces, as they are a sign of the burial history of the monuments and a protective layer against weathering.Article Citation - WoS: 4Citation - Scopus: 4The Future of Regional Inequalities: an Arima Forecast(Springer Heidelberg, 2024) Duran, Hasan EnginThe existing stream of empirical literature on regional inequalities has always adopted a retrospective look by analyzing the past evolution. We depart from the main stream by adopting a future perspective: Will regional inequalities shrink over time? How will the shape of income distribution evolve? Will spatial dependency increase? In the current paper, we forecast the long-term trajectory of per capita real personal income for U.S. states using the ARIMA model. We estimate the future of disparity level (for 2050 and 2090), the shape and spatial pattern of income distribution, convergence trend and spatial dependence by the help of inequality indexes (Atkinson, Coefficient of Variation, Theil) Kernel probability density distributions, explorative maps and Moran's I test. The dataset includes 48 coterminous U.S. states over the period 1929-2022. A set of important results appeared to emerge as an outcome of the empirical analyses: First, income disparities are expected to increase over the long-term period that implies a divergence pattern. Second, the forecasted shape of the income distribution is bi-modal and polarized, therefore, pointing to a widening of the inequalities. Third, the geography of the prosperity is projected to change in a way that the geographical position of high and low-income areas will change. Fourth, spatial dependence in per capita income is expected to fade away in the future. From a political stand point, additional resources should be devoted to the states that are expected to become backward (for some states in Northeast and Southwest) in order to maintain territorial cohesion.