Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 12Citation - Scopus: 15Probabilistic Investigation of Error Propagation in Frequency Domain Decomposition-Based Operational Modal Analysis(John Wiley and Sons Inc., 2021) Hızal, Çağlayan; Aktaş, EnginEach operational modal analysis (OMA) technique may produce significant errors during the identification procedure due to the applied methodology, environmental/operational conditions, and instrumentation. Consequently, those errors can adversely affect the quality of identified parameters. In this context, this study aims at providing a comprehensive discussion on the propagation of predictions errors in the frequency domain OMA. To mitigate the prediction errors those considered to be induced by modeling and measurement errors, an extended formulation is presented based on a recently developed Modified Frequency and Spatial Domain Decomposition technique. A comprehensive investigation is presented for the probabilistic modeling of output power spectral density (PSD), considering prediction errors. Numerical and real data applications are conducted to show the effectiveness of the proposed methodology.Article Citation - WoS: 6Citation - Scopus: 8Outer-Membrane Protease (ompt) Based E.coli Sensing With Anionic Polythiophene and Unlabeled Peptide Substrate(John Wiley and Sons Inc., 2020) Sinsinbar, Gaurav; Gudlur, Sushanth; Wood, Sarah E.; Ammanath, Gopal; Yıldız, Ümit Hakan; Alagappan, Palaniappan; Liedberg, BoE. coli and Salmonella are two of the most common bacterial pathogens involved in foodborne and waterborne related deaths. Hence, it is critical to develop rapid and sensitive detection strategies for near-outbreak applications. Reported is a simple and specific assay to detect as low as 1 CFU mL(-1)of E. coli in water within 6 hours by targeting the bacteria's surface protease activity. The assay relies on polythiophene acetic acid (PTAA) as an optical reporter and a short unlabeled peptide (LL37(FRRV)) previously optimized as a substrate for OmpT, an outer-membrane protease on E. coli. LL37(FRRV)interacts with PTAA to enhance its fluorescence while also inducing the formation of a helical PTAA-LL37(FRRV)construct, as confirmed by circular dichroism. However, in the presence of E. coli LL37(FRRV)is cleaved and can no longer affect the conformations and optical properties of PTAA. This ability to distinguish between an intact and cleaved peptide was investigated in detail using LL37(FRRV)sequence variants.Article Citation - WoS: 18Citation - Scopus: 22A Review of Heat and Fluid Flow Characteristics in Microchannel Heat Sinks(John Wiley and Sons Inc., 2020) Coşkun, Turgay; Çetkin, ErdalHeat transfer and flow characteristic in microchannel heat sinks (MCHS) are extensively studied in the literature due to high heat transfer rate capability by increased heat transfer surface area relative to the macroscale heat sinks. However, heat transfer and fluid flow characteristics in MCHS differ from conventional ones because of the scaling effects. This review summarizes the studies that are mainly based on heat transfer and fluid flow characteristic in MCHS. There is no consistency among the published results; however, everyone agrees on that there is no new physical phenomenon in microscale that does not exist at macroscale. Only difference between them is that the effect of some physical phenomena such as viscous dissipation, axial heat conduction, entrance effect, rarefaction, and so forth, is negligibly small at macroscale, whereas it is not at microscale. The effect of these physical phenomena on the heat transfer and flow characteristics becomes significant with respect to specified conditions such as Reynolds number, Peclet number, hydraulic diameter, and heat transfer boundary conditions. Here, the literature was reviewed to document when these physical phenomena become significant and insignificant.Article Citation - WoS: 12Citation - Scopus: 15Effects of Processing Parameters on Chemical and Physical Properties of Enzymatically Interesterified Beef Tallow-Corn Oil Blends(John Wiley and Sons Inc., 2020) Aktaş, Ayşe Burcu; Özen, Banu; Alamprese, Cristina A.The purpose of this study was to improve some physical and chemical characteristics of tallow through enzymatic interesterification process with corn oil and to investigate effects of process parameters on chemical and physical properties of obtained products. Full factorial design was constructed using blend ratio and reaction time as process parameters. Enzymatic interesterification was catalyzed with sn-1,3-specific lipase. Interesterified lipids have higher free fatty acid content and lower oxidative stability compared to initial blends. Interesterification did not cause trans-fatty acid formation and products mostly contained beta crystals. Solid fat content and slip melting point decreased up to 6 hr of interesterification; however, longer reaction times have negative effects on these parameters. Statistical analyses' results confirmed that reaction time is highly important for enzymatic interesterification. Practical applications Some of interesterified lipids can be utilized as alternatives to margarines or butterfat due to their lower trans-fatty acid content and crystal morphology.Article Citation - WoS: 24Citation - Scopus: 25Prospects for Cellulosic Biofuel Production in the Northeastern United States: a Scenario Analysis(John Wiley and Sons Inc., 2016) Dilekli, Naci; Duchin, FayeSecure access to energy and food are two of the challenges facing the Northeast region of the United States. Traditional biofuel feedstocks, such as corn and oil seed, are able to satisfy energy requirements. However, they compete with food production for desirable land and water resources and, in any case, are not likely to exploit the region's current comparative advantages. This study investigates a potential solution to the energy security problem in the Northeast: biofuel from advanced feedstock in the form of net forest growth and woody wastes, of which the region has abundant endowments. The federal government has committed to requiring 79.5 billion liters (BL) of advanced biofuel production annually by 2022. We evaluate both the physical capacity for its production and its cost competitiveness using an input-output model of consumption, production, and trade in the 13-state region. The model minimizes resource use required to satisfy given consumer demand using alternative technological options and subject to resource constraints. We compile data from the technical literature quantifying state-level biofuel feedstock endowments and the technological requirements for cellulosic ethanol production. We find that exploiting the region's endowment of cellulosic feedstock requires either making the price of biofuels competitive with gasoline through subsidies or restricting imports of gasoline. Based on this initial investigation, we conclude that the region can produce significant amounts of advanced biofuel, up to 20.28 BL of cellulosic ethanol per year, which could displace nearly 12.5% of the gasoline that is now devoted to motorized transport in the region.Article Citation - WoS: 59Citation - Scopus: 57Cmos Enabled Microfluidic Systems for Healthcare Based Applications(John Wiley and Sons Inc., 2018) Hussian, Muhammad M.; Khan, Sherjeel M.; Gümüş, Abdurrahman; Nassar, Joanna M.With the increased global population, it is more important than ever to expand accessibility to affordable personalized healthcare. In this context, a seamless integration of microfluidic technology for bioanalysis and drug delivery and complementary metal oxide semiconductor (CMOS) technology enabled data-management circuitry is critical. Therefore, here, the fundamentals, integration aspects, and applications of CMOS-enabled microfluidic systems for affordable personalized healthcare systems are presented. Critical components, like sensors, actuators, and their fabrication and packaging, are discussed and reviewed in detail. With the emergence of the Internet-of-Things and the upcoming Internet-of-Everything for a people–process–data–device connected world, now is the time to take CMOS-enabled microfluidics technology to as many people as possible. There is enormous potential for microfluidic technologies in affordable healthcare for everyone, and CMOS technology will play a major role in making that happen.Article Citation - WoS: 7Citation - Scopus: 10A Boundary Integral Equation for the Transmission Eigenvalue Problem for Maxwell Equation(John Wiley and Sons Inc., 2018) Cakoni, Fioralba; Ivanyshyn Yaman, Olha; Kress, Rainer; Le Louër, FrédériqueWe propose a new integral equation formulation to characterize and compute transmission eigenvalues in electromagnetic scattering. As opposed to the approach that was recently developed by Cakoni, Haddar and Meng (2015) which relies on a two-by-two system of boundary integral equations, our analysis is based on only one integral equation in terms of the electric-to-magnetic boundary trace operator that results in a simplification of the theory and in a considerable reduction of computational costs. We establish Fredholm properties of the integral operators and their analytic dependence on the wave number. Further, we use the numerical algorithm for analytic nonlinear eigenvalue problems that was recently proposed by Beyn (2012) for the numerical computation of the transmission eigenvalues via this new integral equation.Article Citation - WoS: 21Citation - Scopus: 22First-Principle Phonon Transport Properties of Nanoscale Graphene Grain Boundaries(John Wiley and Sons Inc., 2018) Sandonas, Leonardo Medrano; Sevinçli, Haldun; Gutierrez, Rafael; Cuniberti, GianaurelioThe integrity of phonon transport properties of large graphene (linear and curved) grain boundaries (GBs) is investigated under the influence of structural and dynamical disorder. To do this, density functional tight-binding (DFTB) method is combined with atomistic Green's function technique. The results show that curved GBs have lower thermal conductance than linear GBs. Its magnitude depends on the length of the curvature and out-of-plane structural distortions at the boundary, having stronger influence the latter one. Moreover, it is found that by increasing the defects at the boundary, the transport properties can strongly be reduced in comparison to the effect produced by heating up the boundary region. This is due to the large reduction of the phonon transmission for in-plane and out-of-plane vibrational modes after increasing the structural disorder in the GBs.Article Citation - WoS: 15Citation - Scopus: 13Environmentally Responsive Dual-Targeting Nanoparticles: Improving Drug Accumulation in Cancer Cells as a Way of Preventing Anticancer Drug Efflux(John Wiley and Sons Inc., 2018) Dağlıoğlu, CenkDrug targeting and stimuli-responsive drug release are 2 active areas of cancer research and hold tremendous potential in the management of cancer drug resistance. In this study, I addressed this issue and focused on the synthesis and characterization of pH-responsive Fe3O4@SiO2(FITC)-BTN/folic acid/DOX multifunctional nanoparticles aiming to increase drug accumulation in malignancies with both dual active targeting and endosomal drug release properties. Dye-doped silica magnetic-fluorescent composite was constructed by a simple coprecipitation of Fe+2/Fe+3 salts followed by sol-gel formation and dual-targeting function was obtained by conjugating folate and biotin moieties on the silica surface of nanoparticles via an esterification reaction. Doxorubicin was then successfully attached on the amine-functionalized nanoparticles using a pH-sensitive Schiff-base formation. The physicochemical characterization of the structure was performed by dynamic light scattering, zeta potential measurement, X-ray diffraction, Fourier transform infrared spectroscopy, electron microscopy techniques, and an in vitro pH-dependent release study. Cellular uptake and cytotoxicity experiments demonstrated an enhanced intracellular delivery and reduction of cancer cell viability in the cervical carcinoma HeLa cell line. Furthermore, proapoptotic studies showed that the nanoparticles increased the apoptotic rates within the same cancer cells. The preliminary cell tests confirm the potential of these multifunctional nanoparticles against the development of drug resistance in cancer cells.Article Citation - WoS: 11Citation - Scopus: 11Design and Development of an Educational Desktop Robot R3d(John Wiley and Sons Inc., 2017) Şahin, Osman Nuri; Uzunoğlu, Emre; Tatlıcıoğlu, Enver; Dede, Mehmet İsmet CanRobotic desktop devices have been used for academic purposes for a variety of investigation and development studies. Desktop devices for academic/educational purposes have been highly anticipated especially in the fields of haptics, teleoperation systems, and control studies. This paper's motivation is to present the steps of designing, manufacturing, and implementing of Educational Desktop Robot R3D to be used for haptics, teleoperation, and redundancy control studies. The design, manufacturing details, kinematic, and dynamic model of the robot are described in the manuscript. Additionally, a case study is carried out for end effector control in task space is given and the results are shared.