Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 1Citation - Scopus: 1Completeness of Energy Eigenfunctions for the Reflectionless Potential in Quantum Mechanics(Aip Publishing, 2024) Erman, Fatih; Turgut, O. TeomanThere are a few exactly solvable potentials in quantum mechanics for which the completeness relation of the energy eigenstates can be explicitly verified. In this article, we give an elementary proof that the set of bound (discrete) states together with the scattering (continuum) states of the reflectionless potential form a complete set. We also review a direct and elegant derivation of the energy eigenstates with proper normalization by introducing an analog of the creation and annihilation operators of the harmonic oscillator problem. We further show that, in the case of a single bound state, the corresponding wave function can be found from the knowledge of continuum eigenstates of the system. Finally, completeness is shown by using the even/odd parity eigenstates of the Hamiltonian, which provides another explicit demonstration of a fundamental property of quantum mechanical Hamiltonians.Article Citation - WoS: 5Citation - Scopus: 5Light-Induced, Liquid Crystal-Templated Fabrication of Large-Area Pure Nanoporous Gold Films With High-Density Plasmonic Cavities(Amer Chemical Soc, 2024) Orhan, Ozan Baran; Polat, Nahit; Demir, Seren; Balci, Fadime Mert; Balci, SinanNanoporous gold (NPG) films are three-dimensional gold (Au) frameworks characterized by a uniform distribution of nanoscale irregular pores. Typically produced via a dealloying process, where the less noble silver (Ag) is selectively etched out, NPG films offer a large surface area, excellent chemical stability, remarkable catalytic activity, unique optical properties, and biocompatibility. These attributes make them invaluable for applications in catalysis, plasmonics, biosensors, and nanophotonics. However, the presence of residual Ag from the dealloying process can limit their performance in certain applications. In this study, we report a novel method for the fabrication of ultrapure, large-area NPG films (several cm2) using a light-induced and liquid crystal-templated method. A hexagonal lyotropic liquid crystal containing a strong acid and a nonionic surfactant is combined with an aqueous solution of HAuCl4, followed by the photochemical synthesis of gold nanoparticles (NPs) within the liquid crystal. After calcination of the Au NP-containing liquid crystal film at high temperature, pure NPG films are produced. We demonstrate surface-enhanced Raman spectroscopy (SERS) of Rhodamine 6G (R6G) molecules adsorbed on the NPG films and detect extremely low concentrations (below 10-6 M) of R6G. Additionally, we thoroughly investigated the formation and optical properties of the NPG films. The results reveal that the ultrapure NPG films contain high-density plasmonic nanocavities, where substantial electromagnetic fields are generated, leading to significant enhancement of optical processes at nanoscale dimensions.Article Citation - Scopus: 7Can Mirbase Provide Positive Data for Machine Learning for the Detection of Mirna Hairpins?(2013) Saçar,M.D.; Hamzeiy,H.; Allmer,J.Experimental detection and validation of miRNAs is a tedious, time-consuming, and expensive process. Computational methods for miRNA gene detection are being developed so that the number of candidates that need experimental validation can be reduced to a manageable amount. Computational methods involve homology-based and ab inito algorithms. Both approaches are dependent on positive and negative training examples. Positive examples are usually derived from miRBase, the main resource for experimentally validated miRNAs. We encountered some problems with miRBase which we would like to report here. Some problems, among others, we encountered are that folds presented in miRBase are not always the fold with the minimum free energy; some entries do not seem to conform to expectations of miRNAs, and some external accession numbers are not valid. In addition, we compared the prediction accuracy for the same negative dataset when the positive data came from miRBase or miRTarBase and found that the latter led to more precise prediction models. We suggest that miRBase should introduce some automated facilities for ensuring data quality to overcome these problems.Article Citation - WoS: 5Citation - Scopus: 5Nonreciprocal Transmission Enabled by Time Modulation of Penetrable Metasurface Assisted by Surface Waves(Aip Publishing, 2024) Yilmaz, H. Onder; Yaman, FatihThis study introduces a novel approach to achieving nonreciprocal transmission by implementing time modulation to the bianisotropic metasurface. For the first time, we present the analytical solution of the excitation of anti-symmetric surface waves on penetrable metasurfaces depending on the excitation direction. Exploiting this finding, we numerically demonstrate asymmetric control of the transmission coefficient under a fast-time scale by employing solely time modulation. This approach lowers the complexity of the modulation scheme and implementation encountered in the space-time modulation technique. We develop and simulate a 3D unit cell model in the microwave domain, which forms a surface cavity that incorporates time-varying capacitors. The impedance transfer matrix method and harmonic balance numerical solutions are applied to the retrieved equivalent circuit for the numerical simulations. The results reveal optimized phase-coherent and incoherent nonreciprocal transmission at the significant isolation level ( >= 40 dB) for forward and backward transmissions. We discuss the consistency and discrepancies between numerical methods and consider the impact of the losses and nonlinearity on the metastructure performance. (c) 2024 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) licenseArticle Citation - WoS: 1Citation - Scopus: 1Thickness-Dependent Characteristics and Oxidation of 2d-Cadmium(Royal Soc Chemistry, 2024) Gulucu, Arda; Sahin, HasanIn this study, the structural, electronic, and vibrational properties of the thinnest crystal structure that can be obtained by thinning bulk Cd down to a monolayer are investigated by performing first-principles calculations. Total energy optimization and dynamic stability calculations reveal that the single layer crystal structure has a hexagonal unitcell with a two-atomic basis where alternating layers are formed by trigonal arrangements of Cd atoms. Softening occurs with decreasing zone center optical phonon frequencies as a result of structural relaxation when going from a bulk to a single layer (SL) structure. It is also shown that the thinnest structure obtained from bulk Cd crystals maintains its metallic features despite the dimensional crossover. In addition, it is predicted through calculations that the SL Cd crystal strongly interacts with oxygen and that the oxidized regions even undergo chemical transformation to form a CdO crystal. In the double-layer CdO crystal resulting from the oxidation of individual Cd layers, the layers are connected to each other with partially covalent bonds, and this structure is a semiconductor with a band gap of 2.10 eV. On the one hand, the robust metallic structure of the thinnest possible Cd crystal provides flexibility for its use in nanoscale applications, on the other hand, the fact that its electronic properties can be changed by oxidation is important for optoelectronic device applications. In this study, the structural, electronic, and vibrational properties of the thinnest crystal structure that can be obtained by thinning bulk Cd down to a monolayer are investigated by performing first-principles calculations.Article Citation - WoS: 1Citation - Scopus: 1Quantum Transport Regimes in Quartic Dispersion Materials With Anderson Disorder(Aip Publishing, 2024) Polat, Mustafa; Ozkan, Hazan; Sevincli, HaldunMexican-hat-shaped quartic dispersion manifests itself in certain families of single-layer two-dimensional hexagonal crystals such as compounds of groups III-VI and groups IV-V as well as elemental crystals of group V. A quartic band forms the valence band edge in various of these structures, and some of the experimentally confirmed structures are GaS, GaSe, InSe, SnSb, and blue phosphorene. Here, we numerically investigate strictly one-dimensional and quasi-one dimensional (Q1D) systems with quartic dispersion and systematically study the effects of Anderson disorder on their transport properties with the help of a minimal tight-binding model and Landauer formalism. We compare the analytical expression for the scaling function with simulation data to distinguish the domains of diffusion and localization regimes. In one dimension, it is shown that conductance drops dramatically at the quartic band edge compared to the quadratic case. As for the Q1D nanoribbons, a set of singularities emerge close to the band edge, suppressing conductance and leading to short mean-free-paths and localization lengths. Interestingly, wider nanoribbons can have shorter mean-free-paths because of denser singularities. However, the localization lengths sometimes follow different trends. Our results display the peculiar effects of quartic dispersion on transport in disordered systems. (c) 2024 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) licenseArticle Citation - WoS: 4Citation - Scopus: 4Anisotropic Single-Layer Tilted Α-Bi: Identification of Uniaxial Strain Via Raman Spectrum(Amer Chemical Soc, 2024) Dogan, Kadir Can; Yagmurcukardes, MehmetIn the present study, the structural, vibrational, electronic, and elastic properties of single-layer alpha-Bi are investigated by performing density functional theory-based first-principles calculations. Structural optimizations show that free-standing alpha-Bi possesses a tilted black phosphorus-like anisotropic structure. The phonon band dispersions and linear-elastic parameters reveal the dynamical and mechanical stability of the alpha-Bi structure, respectively. In addition, quantum molecular dynamics simulations indicate the thermal stability of the single layer at room temperature. Electronically, it is found that alpha-Bi exhibits an indirect band gap semiconducting behavior, whose hole and electron effective masses are shown to be orientation-dependent with the latter being more anisotropic. Such anisotropic effective masses reveal orientation-dependent transport properties in single-layer alpha-Bi. Moreover, the orientation-dependent elastic features of alpha-Bi show that at an angle of 45 degrees with respect to the zigzag (ZZ) orientation, an auxetic behavior is predicted for the structure. Furthermore, the impact of uniaxial strains along the two main orientations (ZZ and armchair directions) is investigated on the vibrational properties of single-layer alpha-Bi. The phononic stability of the structure is first predicted at the strain limits (+/- 5) for both directions, and the results reveal the preserved stability of the single layer under both compressive and tensile strains. The calculated Raman spectra under uniaxial strains show that the type (compressive or tensile) and the direction of the applied strain can be deduced from the Raman spectra analysis. Overall, strain-induced modifications in the Raman spectrum of 2D alpha-Bi in terms of the peak positions may be useful tools for the characterization of induced strain in experimental studies.Article Citation - WoS: 1Citation - Scopus: 1Effect of Urbanization on Groundwater Resources Hydrodynamics and Bearing Capacity: a Case Study From the Bayraklı Region, Izmir, ̇ Türkiye(Geological Society of London, 2024) Öztürk,B.; İşbuğa,V.; Bilgiç,E.; Baba,A.The bearing capacity of soil is a critical factor in the design of foundations for civil engineering structures. The bearing capacity depends on soil properties, as well as the location of the water table. A rise in the groundwater level can be dramatic, especially in highly urbanized regions, and can affect the bearing capacity of foundations. In this study, groundwaterlevel fluctuations in a highly urbanized region in Izmir, the third largest city in Türkiye, was monitored over a 1 year period, and ̇ its effect on reducing the bearing capacity, which is not considered in foundation design and construction, was investigated. For this purpose, four observation wells equipped with groundwater data loggers were used to determine the variations in groundwater level over 1 year. Using the Terzaghi approach to calculate the bearing capacity, normalized bearing capacity plots for various foundation width/depth (B/Df) ratios were generated for all four observation wells. Remarkable bearing capacity changes of 10.94, 8.21, 7.62 and 9.29% were observed in four different observation wells (OW-1, OW-3, OW-6 and OW-9, respectively). The study showed that changes in groundwater level in the region caused by urbanization poses a potential risk to the sustainability of previously constructed foundations. © 2024 The Author(s).