Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Citation - WoS: 3Citation - Scopus: 5Plasmon-Induced Spectral Tunability of Perovskite Nanowires(Elsevier, 2021) Gökbulut, Belkıs; Topçu, Gökhan; Demir, Mustafa Muammer; İnci, Mehmet NaciIn this paper, plasmon-assisted spectral tunability in random media, composed of Perovskite (CsPbBr3) nanowires surrounded by Au nanoparticle clusters in polystyrene matrix, is achieved. The interaction between the surface plasmons and the quantum sources is observed to generate photoluminescence from the higher excited state energy levels of the excited semiconductor nanowires, which results in a blueshifted fluorescence emission of 50 nm. The localized surface plasmon properties are also determined to be tuned by plasmonic pumping of the quantum sources at different resonant frequencies. Thus, the first observation of the tunable blueshifted fluorescence emission of the semiconductor nanocrystals surrounded by plasmonic nanoparticle aggregates is achieved. The dramatic changes in the spectral profiles of the fluorescent nanowires are attributed to be due to the fast dynamics surface enhanced fluorescence mechanism.Article Citation - WoS: 39Citation - Scopus: 46Surface Free Energy Analysis of Ito/Au Multilayer Thin Films on Polycarbonate Substrate by Apparent Contact Angle Measurements(Elsevier, 2020) Özbay, Salih; Erdoğan, Nursev; Erden, Fuat; Ekmekçioğlu, Merve; Özdemir, Mehtap; Aygün, Gülnur; Özyüzer, LütfiA detailed surface free energy (SFE) knowledge of transparent conducing oxide (TCO)/metal/TCO electrodes is necessary for their applications related to surface wettability. However, SFE analysis of these surfaces has not been performed systematically previously. In this study, ITO and ITO/Au/ITO multilayer thin films were coated onto O-2 plasma treated polycarbonate (PC) substrates by magnetron sputtering. The wettability characteristics of untreated PC, O-2 plasma treated PC, ITO, Au interlayer, and ITO/Au/ITO multilayer thin films were evaluated by apparent contact angle measurements of nine different test liquids having various surface tensions. Following this, Lifshitz-van der Waals, acidic, basic, dispersive, and polar components of SFE were calculated using acidbase, geometric and harmonic mean approaches. In the present study, in which the significance of calculation methods and selected liquid pairs on SFE parameters were investigated, the effect of Au interlayer presence on SFE parameters were also evaluated simultaneously. The results showed that the total SFE values of ITO/Au/ITO multilayer thin films were found to be higher than that of ITO surface. The reasons behind this difference were discussed in terms of SFE components obtained using various liquid pairs by different methods. The results were also supported with XRD, XPS, AFM, and TEM analysis.Article Citation - WoS: 63Citation - Scopus: 72Ito/Au Multilayer Thin Films on Transparent Polycarbonate With Enhanced Emi Shielding Properties(Elsevier, 2020) Erdoğan, Nursev; Erden, Fuat; Astarlıoğlu, A. Taner; Özdemir, Mehtap; Özbay, Salih; Aygün, Gülnur; Özyüzer, LütfiITO/Au/ITO multilayer thin films were deposited onto polycarbonate substrate via magnetron sputtering technique without intentional heating. The deposition times of both ITO and Au layers were studied to optimize the overall transparency and conductivity. As-prepared thin films were characterized using X-ray diffraction analysis, secondary ion mass spectroscopy, scanning and transmission electron microscopy, atomic force microscopy and physical property measurement system. The optical measurement results revealed that the transmittance of the films were enhanced by increasing the gold deposition time up to 15 s. Beyond this point, further increasing the duration caused a decrease in optical transmittance. Upon optimization of the Au deposition time, the deposition duration of ITO layers was also studied to increase electromagnetic interference (EMI) shielding effectiveness (SE). Maximum EMI SE in this work was measured as 26.8 dB, yielding 99.8% power attenuation, which was verified by simulation results.Article Citation - WoS: 65Citation - Scopus: 72Effect of Peg Grafting Density and Hydrodynamic Volume on Gold Nanoparticle-Cell Interactions: an Investigation on Cell Cycle, Apoptosis, and Dna Damage(American Chemical Society, 2016) Uz, Metin; Bulmuş, Volga; Alsoy Altınkaya, SacideIn this study, interactions of polyethylene glycol (PEG)-coated gold nanoparticles (AuNPs) with cells were investigated with particular focus on the relationship between the PEG layer properties (conformation, grafting density, and hydrodynamic volume) and cell cycle arrest, apoptosis, and DNA damage. Steric hindrance and PEG hydrodynamic volume controlled the protein adsorption, whereas the AuNP core size and PEG hydrodynamic volume were primary factors for cell uptake and viability. At all PEG grafting densities, the particles caused significant cell cycle arrest and DNA damage against CaCo2 and PC3 cells without apoptosis. However, at a particular PEG grafting density (∼0.65 chains/nm2), none of these severe damages were observed on 3T3 cells indicating discriminating behavior of the healthy (3T3) and cancer (PC3 and CaCo2) cells. It was concluded that the PEG grafting density and hydrodynamic volume, tuned with the PEG concentration and AuNP size, played an important role in particle-cell interactions.Article Citation - WoS: 24Citation - Scopus: 24A Ratiometric Fluorescent Probe for Gold and Mercury Ions(John Wiley and Sons Inc., 2015) Üçüncü, Muhammed; Karakuş, Erman; Emrullahoğlu, MustafaA fluorescent probe that displays a ratiometric fluorescence response towards gold and mercury ions has been devised. Emitting at a relatively longer wavelength, the conjugated form of the fluorescent dye transforms in the presence of the gold or mercury ions into a new dye, the molecular structure of which lacks the conjugation and consequently emits at a distinctly shorter wavelength. A fluorescent probe that displays a ratiometric fluorescence response towards gold and mercury ions has been devised. Emitting at a relatively longer wavelength, the conjugated form of the fluorescent dye transforms in the presence of the gold or mercury ions into a new dye (see figure).Article Citation - WoS: 76Citation - Scopus: 79Near-Surface Viscosity Effects on Capillary Rise of Water in Nanotubes(American Physical Society, 2015) Vo, Truong Quoc; Barışık, Murat; Kim, BoHungIn this paper, we present an approach for predicting nanoscale capillary imbibitions using the Lucas-Washburn (LW) theory. Molecular dynamics (MD) simulations were employed to investigate the effects of surface forces on the viscosity of liquid water. This provides an update to the modified LW equation that considered only a nanoscale slip length. An initial water nanodroplet study was performed to properly elucidate the wetting behavior of copper and gold surfaces. Intermolecular interaction strengths between water and corresponding solid surfaces were determined by matching the contact angle values obtained by experimental measurements. The migration of liquid water into copper and gold capillaries was measured by MD simulations and was found to differ from the modified LW equation. We found that the liquid layering in the vicinity of the solid surface induces a higher density and viscosity, leading to a slower MD uptake of fluid into the capillaries than was theoretically predicted. The near-surface viscosity for the nanoscale-confined water was defined and calculated for the thin film of water that was sheared between the two solid surfaces, as the ratio of water shear stress to the applied shear rate. Considering the effects of both the interface viscosity and slip length of the fluid, we successfully predicted the MD-measured fluid rise in the nanotubes.Article Citation - WoS: 45Citation - Scopus: 47Impedimetric Detection of Pathogenic Bacteria With Bacteriophages Using Gold Nanorod Deposited Graphite Electrodes(Royal Society of Chemistry, 2016) Moghtader, Farzaneh; Çongur, Gülşah; Zareie, Hadi M.; Erdem, Arzum; Pişkin, ErhanElectrochemical impedance spectroscopy (EIS) is applied for the detection of bacteria using bacteriophages as a bioprobe together with gold nanorods (GNRs). Escherichia coli-E. coli K12 was used as a model target bacteria and also for the propagation of its specific T4-phages. Gold nanorods (GNRs) were synthesized via a two-step protocol and characterized using different techniques. EIS measurements were conducted in an electrochemical cell consisting of a three electrode system. Single-use pencil graphite electrodes (PGE) were modified by the physical adsorption of GNRs to increase their interfacial conductivity and therefore sensitivity for impedimetric measurements. Therefore, interfacial charge-transfer resistance values (Rct) sharply decreased after GNRs deposition. Phages were adsorbed on these electrodes via a simple incubation protocol at room temperature, which resulted in an increase in Rct values, which was concluded to be as a result of nonconductive phage layers. These phage-carrying GNRs-PGEs were used for impedimetric detection of the target bacteria, E. coli. Significant increases at the Rct values were observed which were attributed to the insulation effects of the adsorbed bacterial layers. This increase was even more when the bacterial concentrations were higher. In the case of the non-target bacteria Staphylococcus aureus (S. aureus), conductivity noticeable decreases (due to nonspecific adsorption). However, in the case of E. coli, the Rct value increase is time dependent and reaches maximum in about 25-30 min, then decreases gradually as a result of bacterial lysis due to phage invasion on the electrode surfaces. In contrast, there were no time dependent changes with the non-target bacteria S. aureus (no infection and no lytic activity). It is concluded that the target bacteria could be detected using this very simple and inexpensive detection protocol with a minimum detection limit of 103 CFU mL-1 in approximately 100 μL bacterial suspension.Article Citation - WoS: 22Citation - Scopus: 25A Bodipy/Pyridine Conjugate for Reversible Fluorescence Detection of Gold(iii) Ions(Royal Society of Chemistry, 2015) Üçüncü, Muhammed; Karakuş, Erman; Emrullahoğlu, MustafaWe designed a "turn-on" type fluorescent probe based on a BODIPY-pyridine conjugate which exhibits high selectivity towards Au(iii) ions and, also responds to changes in the pH within the acidic pH range. The probe offers features such as a rapid response time, a low detection limit, and high sensitivity and selectivity. The detection of Au(iii) is recognized by a distinct change in the emission intensity which relies on a reversible "ligand to ion" binding mechanism. We also document the utility of the probe for the quantification of gold ion residues in synthetic end products prepared via gold catalysis. © 2015 The Royal Society of Chemistry and the Centre National de la Recherche Scientifique.Article Citation - WoS: 17Citation - Scopus: 22Responsive pentablock copolymers for siRNA delivery(Royal Society of Chemistry, 2015) Uz, Metin; Mallapragada, Surya K.; Alsoy Altınkaya, SacideIn this study, temperature and pH responsive cationic and amphiphilic pentablock copolymers, which consist of the temperature responsive triblock Pluronic F127 sandwiched between pH responsive PDEAEM (poly(2-diethylaminoethyl methacrylate)) end blocks, were used for the first time in the development of polyplex and gold nanoparticle (AuNP) based multicomponent siRNA delivery systems (MCSs). Copolymers in both systems protected siRNA from external effects, provided cell entry and endosomal escape. The thermoreversible micellization of the hydrophobic PPO block facilitated the cellular entry while the PDEAEM blocks enhanced the endosomal escape through protonated tertiary amine groups by pH buffering. The synergistic advantages of the different blocks showed an enhanced effect in the MCSs due to attachment and surface configuration reasons. The siRNA transfection efficiency of MCSs against luciferase expressing SKOV3 cells was 15% higher than both the polyplexes alone and the commercial siRNA transfection agent Lipofectamine RNAiMax at the same applied dose, without any toxicity. The results indicated that the multicomponent systems based on the responsive cationic pentablock copolymers and gold nanoparticles have promising potential as an efficient siRNA delivery vector for future applications.Article Citation - WoS: 3Citation - Scopus: 3Gold Nanorod Encapsulated Bubbles(Royal Society of Chemistry, 2015) Tomak, Aysel; Zareie, Hadi M.A simple method has been described for synthesizing gold nanorods (GNRs) encapsulated bubbles in a controlled manner. The method involves the use of nitrogen gas in the seed-mediated synthesis method routinely used for synthesis of GNRs. Control over the morphology of the nanostructures was achieved by nitrogen gas flow. The synthesized structures were examined by UV-Vis Spectroscopy, Scanning Electron Microscopy (SEM) and Atomic Force Microscopy (AFM). New structures of this type could conceivably serve as plasmonic biosensors, nanodevices and photothermal theranostics with dual modality imaging functionality. © The Royal Society of Chemistry 2015.