Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7148
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Article Mass Spectrometric Profiling Reveals Alterations in N-Glycans and O-Glycans in Tay-Sachs Disease Under Autophagy-Induced Conditions(Springer, 2025) Can, Melike; Basirli, Hande; Jin, Chunsheng; Karlsson, Niclas G.; Bojar, Daniel; Seyrantepe, VolkanTay-Sachs disease is a rare neurodegenerative disorder caused by mutations in the HEXA gene. The HEXA gene encodes the alpha-subunit of the enzyme beta-hexosaminidase A, which degrades GM2 ganglioside. Previously, we identified impaired autophagy in the brains of a mouse model of Tay-Sachs disease, which exhibited neuropathological and clinical abnormalities. Moreover, we demonstrated autophagosome clearance in Tay-Sachs cells under lithium-induced conditions. Here, we further aimed to evaluate N- and O-glycan changes in these cells and examine whether glycan alterations are linked to ER stress. The profiles of N- and O-glycans were analyzed using LC-MS/MS in fibroblasts and neuroglial cells from 5-month-old Hexa-/-Neu3-/- mice and neuroglial cells from Tay-Sachs patients under lithium induction and nutrient deprivation. The expression levels of ER stress-related markers were assessed using qRT-PCR and Western blot analyses. We demonstrated higher levels of high mannose and lower levels of complex types of N-glycans, along with increased O-glycan levels in Tay-Sachs cells. Compared to control groups, we observed upregulated expression of endoplasmic reticulum (ER) stress-related markers, CHOP and ATF-6, in Tay-Sachs cells. Our study demonstrated that autophagy induction causes the degradation of accumulated high-mannose N-glycans and O-glycans, which is associated with the downregulation of ER stress-related genes in Tay-Sachs cells. Our study is the first to show this phenomenon in Tay-Sachs cells and suggests the presence of ER stress-mediated autophagy. Therefore, targeting glycans through autophagy induction could offer therapeutic benefits to patients with Tay-Sachs disease in future studies.Article Citation - WoS: 17Citation - Scopus: 16Synthesis, Characterization and Adsorption Studies of Phosphorylated Cellulose for the Recovery of Lithium From Aqueous Solutions(Editura Acad Romane, 2021) Recepoğlu, Yaşar Kemal; Yüksel, AslıIn this study, pristine cellulose was functionalized by the phosphorylation reaction to make it suitable for lithium separation. After characterization studies of the synthesized adsorbent with SEM, EDX, FTIR, TGA and XPS, the effects of various parameters on the lithium uptake capacity of the adsorbent were examined. The analysis of equilibrium data by several adsorption models showed that maximum adsorption capacity of the adsorbent was found to be 9.60 mg/g at 25 degrees C by the Langmuir model. As initial concentration and contact time increased, adsorption capacity also increased, however, mild temperature (25-35 degrees C) and pH (5-6) were better for the adsorption of lithium. 80% of lithium adsorption within three minutes proved the fast kinetic nature of the adsorbent. A 99.5% desorption efficiency of lithium was achieved with 0.5 M H2SO4, among HCl and NaCl with different molarities. Phosphorylated cellulose was shown to be a favorable adsorbent for the recovery of lithium from aqueous solutions.Article Citation - WoS: 17Citation - Scopus: 19Effect of Operational Conditions on Separation of Lithium From Geothermal Water by ?-Mno2 Using Ion Exchange–membrane Filtration Hybrid Process(Taylor and Francis Ltd., 2018) Recepoğlu, Yaşar Kemal; Kabay, Nalan; Yoshizuka, Kazuharu; Nishihama, Syouhei; Yılmaz İpek, İdil; Arda, Müşerref; Yüksel, MithatA hybrid system coupling ion exchange and ultrafiltration (UF) was employed to separate lithium from lithium-spiked geothermal water. The effect of process parameters such as adsorbent type, adsorbent dosage, permeate flow rate, and replacement speeds of fresh and saturated adsorbents have been evaluated to determine the efficiency of the hybrid system. According to the results obtained using λ-MnO2 derived from spinel-type lithium manganese dioxide, the optimal operating conditions to separate lithium from geothermal water were found with powdery λ-MnO2 with an adsorbent concentration of 1.5 g adsorbent/L solution, replacement rates of fresh and saturated adsorbents of 6.0 mL/min, and a permeate flow rate of 5.0 mL/min. The ion exchange–UF hybrid system providing an advantage to work with very fine particles easily can be considered as a favorable process for the separation of lithium from geothermal water.Article Citation - WoS: 1Citation - Scopus: 1Adsorption and Diffusion Characteristics of Lithium on Hydrogenated ?- and Ss-Silicene(Beilstein-Institut Zur Forderung der Chemischen Wissenschaften, 2017) İyikanat, Fadıl; Kandemir, Ali; Bacaksız, Cihan; Şahin, HasanUsing first-principles density functional theory calculations, we investigate adsorption properties and the diffusion mechanism of a Li atom on hydrogenated single-layer α- and β-silicene on a Ag(111) surface. It is found that a Li atom binds strongly on the surfaces of both α- and β-silicene, and it forms an ionic bond through the transfer of charge from the adsorbed atom to the surface. The binding energies of a Li atom on these surfaces are very similar. However, the diffusion barrier of a Li atom on H-α-Si is much higher than that on H-β-Si. The energy surface calculations show that a Li atom does not prefer to bind in the vicinity of the hydrogenated upper-Si atoms. Strong interaction between Li atoms and hydrogenated silicene phases and low diffusion barriers show that α- and β-silicene are promising platforms for Li-storage applications.Article Citation - WoS: 89Citation - Scopus: 94Effects of Li Substitution in Bi-2223 Superconductors(Springer Verlag, 2008) Bilgili, Özlem; Selamet, Yusuf; Kocabaş, KemalThe effects of Li substitution on the properties of high temperature superconductor Bi 17Pb 0.3Sr 2C 2Cu 3-x Li x O y were investigated. The samples were prepared by substituting Li (x=0.00-0.20) with changing ratios by a solid state reaction method. The samples were characterized by X-ray diffraction, DC electrical resistivity, AC magnetic susceptibility, and scanning electronic microscopy (SEM). The X-ray diffraction studies were done at room temperature and the lattice constants of the material were determined by indexing all the peaks observed. This study shows that there are two coexisting phases; high-T c (2223) phase and low-T c (2212) phase. The lattice structure of the material belongs to the orthorhombic unit cell. The volume fraction was estimated from the intensities of Bi-(2223) and Bi-(2212) phases. The sample with 20 wt% of added Li showed the higher volume fraction of Bi-(2223) phase formed (81%) compared to the other samples. The DC electrical resistivity of all the samples decreased as the wt% of Li increased. Both the onset critical temperatures T c (onset) and zero electrical resistivity critical temperatures T c (R=0) of the samples were determined from the DC electrical resistivity measurements. The observed value of the onset critical T c (onset) temperature was 110 K agreeing well with the magnetic susceptibility measurements. We obtained T c onset at 112 K from AC magnetic susceptibility measurements. © 2008 Springer Science+Business Media, LLC.