WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7150
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Article Citation - WoS: 2Citation - Scopus: 2A Comprehensive Study on the Effectiveness of the Stress and Damage Model Parameters in Predicting the Compression Fracture Behavior of Selective Laser Melted AlSi10Mg BCC Lattices(Elsevier B.V., 2025) Guden, Mustafa; Erten, Hacer Irem; Gorguluarslan, Recep M.; Gulletutan, Umut Can; Dagkolu, Akin; Gokdag, Istemihan; Namazov, SubhanThe Johnson and Cook (JC) stress and damage model parameters determined from the machined bulk cylindrical specimens and as-built struts through tension and compression tests were used to model quasi-static compression behavior of selective laser melt-fabricated AlSi10Mg alloy lattices. The lattices had the same cell size (10 mm) and strut diameter (1 mm), but different number of cells (2 x 2 x 2, 10 x 10 x 2 and 5 x 5 x 5) and geometries (sandwich and cubic). Four different sets of JC damage model parameters (brittle and ductile notch-insensitive and compression and tension notch-sensitive) were further implemented in the lattice compression numerical models. The brittle damage model parameters and smaller mesh sizes resulted in cracking the face-sheet corner strut nodes before the occurrence of a bending-dominated initial peak stress. The notch-sensitive damage model parameters exhibited no bent-strut fracture in the middle layers of the lattices and increased the crack initiation strains as compared with the notch-insensitive damage model parameters. Despite significant variations in the initial peak stresses of the tested 2 x 2 x 2 and 10 x 10 x 2 lattices, the implication of the strut micro-tension stress model together with the compression notch-sensitive damage model parameters using 0.25 mm mesh size conservatively approximated the experimental deformation stresses while the machined bulk specimen tensionstress model over predicted the experimental stresses. On the other side, the strut stress model with 0.15 mm mesh size accurately predicted the experimental diagonal shear/fracture mode of struts with a slightly higher numerical initial peak stress. The compression tests on the strut specimens extracted from the as-built lattices yielded similar stress model parameters with the micro-tension tests. The differences between the initial peak stresses of the investigated sandwich and cubic lattices were further explained by the differences in the lattice boundary conditions.Article Citation - WoS: 8Citation - Scopus: 7Delignification of Corncob by Choline Chloride-Urea Deep Eutectic Solvent for Enzymatic Production of Xylooligosaccharides(Elsevier B.V., 2024) Yanak,S.; Buyukkileci,A.O.Deep eutectic solvent (DES) pretreatment was applied to corncob to obtain xylooligosaccharides (XOS) by enzymatic hydrolysis using xylanase. Based on the XOS titers in the hydrolysate, urea was the most effective among the hydrogen bond donors tested to couple choline chloride (ChCl). DES pretreatment at 130 °C for two hours with ChCl-Urea (molar ratio of 1:2) containing 40 % water, decreased lignin fraction from 12.8 % to 6.9 %, while 79 % of the xylan was retained in the pretreated corncob. The highest XOS production was obtained using 400 U/g xylanase at 60 °C, which yielded 12.0 g/L XOS with a low degree of polymerization (LDP-XOS). The total XOS yield based on the raw corncob was calculated as 14.4 %, 90 % of which was LDP-XOS. The cellulose-rich residual biomass could be hydrolyzed enzymatically to glucose with 65 % cellulose digestibility. The discarded biomass after hydrolyzes was 21.7 % of the raw material. The results showed that DES was a promising pretreatment for enhancing enzymatic XOS production. © 2024 Elsevier B.V.Article Citation - WoS: 13Citation - Scopus: 12Dunaliella Salina Microalgae Aqueous Extract-Based Magnetic Nanoparticles (fe3o4-Nps): Green Synthesis, Characterization and in Vitro Anticancer Investigations(Elsevier B.V., 2024) Jafari,N.; Hamishehkar,H.; Mohammadpourfard,M.In the current study, a facile, rapid, and eco-friendly method was provided for green synthesizing of magnetic Fe3O4-NPs with enhanced stability and biocompatibility using different weight concentrations (1 %, 3 %, and 5 %) of aqueous extract of Dunaliella salina (D. salina) microalgae. The properties of the green-synthesized magnetic nanoparticles (GMNPs-ex1%, GMNPs-ex3%, and GMNPs-ex5%) were compared with chemically-synthesized ones (CMNPs) via XRD, TEM, FESEM, VSM, DLS, ZP, FTIR, hemolysis, cell viability, DAPI staining, and apoptosis analyses. TEM imaging revealed mean sizes of 11.21 ± 2.63 nm and 14.08 ± 3.24 nm for GMNPs-ex5% and CMNPs, respectively, with better dispersity for GMNPs-ex5%, as confirmed with their polydispersity index (PDI = 0.24 for GMNPs-ex5% and 0.58 for CMNPs). These sizes were consistent with the crystallite size of pure magnetite phase nanoparticles obtained from XRD. FESEM images confirmed spherical shape for the majority of nanoparticles. FTIR spectra confirmed the involvement of functional groups from the extract in GMNPs, contributing to their stability (ZP of GMNPs-ex5% = −34 mV). The saturation magnetization decreased with increasing the extract ratio (from 62.41 to 8.94 emu/g), attributed to the non-magnetic nature of the extract coating. GMNPs-ex5% exhibited a negligible hemolysis rate (< 2 %) compared to CMNPs. Furthermore, IC50 values of GMNPs and extract against HFF-2 and A549 cells were higher than those of CMNPs, indicating the biocompatibility of green-synthesized nanoparticles. In the DAPI staining method, GMNPs-ex5%, similar to the extract, caused less DNA damage to HFF-2 cells. Additionally, the apoptosis assay using annexin V/PI staining kit indicated that green-synthesized nanoparticles induced lower apoptosis in normal cells. Overall, this study highlights the potential of green-synthesized Fe3O4-NPs for various biomedical applications, showcasing their enhanced properties and biocompatibility compared to conventionally synthesized counterparts. © 2024 Elsevier B.V.Article Citation - WoS: 3Citation - Scopus: 4Caffeic Acid Phenethyl Ester (cape) Chitosan Capped Zno Nanoparticles: Preparation, Characterization, and Its Potential for the Treatment of Prostate Cancer(Elsevier B.V., 2024) İnce,İ.; Yıldırım,Y.; Göker,E.; Güler,G.; Saltan,F.; Acar,R.; Medine,E.İ.The synthesis of zinc oxide nanoparticles/chitosan (ZnONPs/CS) formulation loaded with Caffeic acid phenethyl ester (CAPE) was performed to evaluate its prostate cancer treatment efficiency within the scope of this research. It has been hypothesized that a dual active materials delivery system containing ZnO and CAPE loaded Chitosan (CS) nanoparticles has better bioavailability compared to single one against to cancer cells. ZnONPs were synthesized between 45 and 60 nm particle sizes and then they were capped with CS biodegradable polymer prior to load with CAPE bioactive molecule. ZnONPs/CS-CAPE system was characterized by using Fourier Transform Infrared (FTIR) for structural elucidation, Scanning Electron Microscope (SEM) for particle size determination, High Performance Liquid Chromatography (HPLC) system for determination of CAPE amount. 131I CAPE and 131I ZnONPs/CS-CAPE labeled by the Iodogen method with 131I were used in-vitro cell culture experiments. Cell viabilities (%) of CAPE and ZnONPs/CS-CAPE were examined using Cell Counting Kit-8 assay on PC-3 (human adenocarcinoma prostate), LnCaP (human carcinoma prostate), and RWPE-1 (human normal prostate). IC50 values of ZnONPs /CS -CAPE on all cells were found 2-fold lower than neat CAPE. Based on the FTIR data, the most significant spectral changes (lipid, protein, nucleic acids, glycogen) were monitored for the PC-3 and LnCaP cancer cells incubated with ZnONPs/CS-CAPE samples while being exposed to neat CAPE molecules caused small cellular changes when compared to RWPE-1 healthy cell lines. © 2024Article Citation - WoS: 2Citation - Scopus: 2Small Angle X-Ray Scattering Analysis of Thermophilic Cytochrome P450 Cyp119 and the Effects of the N-Terminal Histidine Tag(Elsevier B.V., 2024) Doğru,E.K.; Sakallı,T.; Liu,G.; Sayers,Z.; Surmeli,N.B.Combining size exclusion chromatography-small angle X-ray scattering (SEC-SAXS) and molecular dynamics (MD) analysis is a promising approach to investigate protein behavior in solution, particularly for understanding conformational changes due to substrate binding in cytochrome P450s (CYPs). This study investigates conformational changes in CYP119, a thermophilic CYP from Sulfolobus acidocaldarius that exhibits structural flexibility similar to mammalian CYPs. Although the crystal structure of ligand-free (open state) and ligand-bound (closed state) forms of CYP119 is known, the overall structure of the enzyme in solution has not been explored until now. It was found that theoretical scattering profiles from the crystal structures of CYP119 did not align with the SAXS data, but conformers from MD simulations, particularly starting from the open state (46 % of all frames), agreed well. Interestingly, a small percentage of closed-state conformers also fit the data (9 %), suggesting ligand-free CYP119 samples ligand-bound conformations. Ab initio SAXS models for N-His tagged CYP119 revealed a tail-like unfolded structure impacting protein flexibility, which was confirmed by in silico modeling. SEC-SAXS analysis of N-His CYP119 indicated pentameric structures in addition to monomers in solution, affecting the stability and activity of the enzyme. This study adds insights into the conformational dynamics of CYP119 in solution. © 2024 Elsevier B.V.Article Citation - WoS: 5Citation - Scopus: 6Fabrication of Gelatin-Polyester Based Biocomposite Scaffold Via One-Step Functionalization of Melt Electrowritten Polymer Blends in Aqueous Phase(Elsevier B.V., 2024) Köksal,B.; Kartal,R.B.; Günay,U.S.; Durmaz,H.; Yildiz,A.A.; Yildiz,Ü.H.The rapid manufacturing of biocomposite scaffold made of saturated-Poly(ε-caprolactone) (PCL) and unsaturated Polyester (PE) blends with gelatin and modified gelatin (NCO-Gel) is demonstrated. Polyester blend-based scaffold are fabricated with and without applying potential in the melt electrowriting system. Notably, the applied potential induces phase separation between PCL and PE and drives the formation of PE rich spots at the interface of electrowritten fibers. The objective of the current study is to control the phase separation between saturated and unsaturated polyesters occurring in the melt electro-writing process and utilization of this phenomenon to improve efficiency of biofunctionalization at the interface of scaffold via Aza-Michael addition reaction. Electron-deficient triple bonds of PE spots on the fibers exhibit good potential for the biofunctionalization via the aza-Michael addition reaction. PE spots are found to be pronounced in which blend compositions are PCL-PE as 90:10 and 75:25 %. The biofunctionalization of scaffold is monitored through C[sbnd]N bond formation appeared at 400 eV via X-ray photoelectron spectroscopy (XPS) and XPS chemical mapping. The described biofunctionalization methodology suggest avoiding use of multi-step chemical modification on additive manufacturing products and thereby rapid prototyping of functional polymer blend based scaffolds with enhanced biocompatibility and preserved mechanical properties. Additionally one-step additive manufacturing method eliminates side effects of toxic solvents and long modification steps during scaffold fabrication. © 2024 Elsevier B.V.Article Citation - WoS: 1Citation - Scopus: 1The Harmonic Oscillator Potential Perturbed by a Combination of Linear and Non-Linear Dirac Delta Interactions With Application To Bose–einstein Condensation(Elsevier B.V., 2024) Akyüz,C.; Erman,F.; Uncu,H.In this paper, we study the bound state analysis of a one dimensional nonlinear version of the Schrödinger equation for the harmonic oscillator potential perturbed by a δ potential, where the nonlinear term is taken to be proportional to δ(x)|ψ(x)|2ψ(x). The bound state wave functions are explicitly found and the bound state energy of the system is algebraically determined by the solution of an implicit equation. Then, we apply this model to the Bose–Einstein condensation of a Bose gas in a harmonic trap with a dimple potential. We propose that the many-body interactions of the Bose gas can be effectively described by the nonlinear term in the Schrödinger equation. Then, we investigate the critical temperature, the condensate fraction, and the density profile of this system numerically. © 2024 Elsevier B.V.Article Citation - WoS: 7Citation - Scopus: 7Contributory Roles of Concentration and Ph in Caco3 Growth Inhibition for Submicron Particles Synthesis With Additive Ca2+(Elsevier B.V., 2024) Majekodunmi,O.T.; Kilic,S.; Ozdemir,E.Excessive growth of CaCO3 precipitates is inhibited by additive Ca2+. Here, we report the influence of concentration and solution pH on the extent of growth inhibition. Equal volumes of equimolar CaCl2 and Na2CO3 solutions were mixed and continuously dispersed in Ca(OH)2 solution, where Ca2+ irreversibly adsorb on the precipitates. Compared to conditions where additive Ca2+ are absent, this method can produce more than 90% decrease in particle size. We observe the degree of growth inhibition increases as the concentration of additive Ca2+, relative to the volume of precipitates, increases. An unusual role of pH is also revealed: growth inhibition that leads to the synthesis of monodisperse submicron CaCO3 particles is only observed in high alkaline pH conditions. Additive Ca2+ adsorb on CaCO3 precipitates in pH conditions above the isoelectric point (pH ≈ 9), but their ability to limit CaCO3 growth diminishes when pH < 12. © 2024 Elsevier B.V.Article Citation - WoS: 5Citation - Scopus: 6Development of a Unique Integrated Bioreactor for Simultaneous Desalination and Bioenergy and Biohydrogen Production(Elsevier B.V., 2024) Yagmur Goren,A.; Dincer,I.; Khalvati,A.In the wastewater treatment challenge, it is really essential to develop integrated systems in reducing greenhouse gases, producing green energy and achieving sustainable development. In this regard, an integrated electro-biomembrane reactor was developed and performed in this study for simultaneous biohydrogen (bioH2) production from energetic poplar leaves using dark fermentation (DF) process, conventional H2 production, bioenergy production in the DF process, and saline water desalination in a single system. The results of this study showed that pH was the main controlling parameter in bioH2 production, and the superior production of 40.2 mL/g-biomass was obtained at a pH of 5.5. The maximum current and power density values were 2861.7 mW/m2 and 2819.4 mA/m2 at pH 5.5 under improved conditions. Furthermore, the maximum conventional H2 production was found to be 1341.6 mL using 2 M of KOH solution. Overall, the results further proved that the proposed integrated system can be a sustainable and promising process for industrial applications, considering its high desalination, energy production, and conventional and biological H2 production efficiencies. © 2024 The AuthorsArticle Citation - WoS: 13Citation - Scopus: 16Observation of Bs 0 Mesons and Measurement of the Bs 0/B+ Yield Ratio in Pbpb Collisions at [formula Presented] Tev(Elsevier B.V., 2022) Tumasyan, A.; Adam, W.; Ambrogi, F.; Bergauer, T.; Dragicevic, M.; Erö, J.; Kirakosyan, M.The Bs 0 and B+ production yields are measured in PbPb collisions at a center-of-mass energy per nucleon pair of 5.02 TeV. The data sample, collected with the CMS detector at the LHC, corresponds to an integrated luminosity of 1.7 nb−1. The mesons are reconstructed in the exclusive decay channels B→s0J/ψ(μ+μ−)ϕ(K+K−) and B→+J/ψ(μ+μ−)K+, in the transverse momentum range 7–50 GeV/c and absolute rapidity 0–2.4. The Bs 0 meson is observed with a statistical significance in excess of five standard deviations for the first time in nucleus-nucleus collisions. The measurements are performed as functions of the transverse momentum of the B mesons and of the PbPb collision centrality. The ratio of production yields of Bs 0 and B+ is measured and compared to theoretical models that include quark recombination effects. © 2022 The Author(s)