WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7150
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Article Enhancing Thickness Determination of Nanoscale Dielectric Films in Phase Diffraction-Based Optical Characterization Systems With Radial Basis Function Neural Networks(IOP Publishing, 2023) Ataç, Enes; Karatay, Anıl; Dinleyici, Mehmet SalihAccurate determination of the optical properties of ultra-thin dielectric films is an essential and challenging task in optical fiber sensor systems. However, nanoscale thickness identification of these films may be laborious due to insufficient and protracted classical curve matching algorithms. Therefore, this experimental study presents an application of a radial basis function neural network in phase diffraction-based optical characterization systems to determine the thickness of nanoscale polymer films. The non-stationary measurement data with environmental and detector noise were subjected to a detailed analysis. The outcomes of this investigation are benchmarked against the linear discriminant analysis method and further verified by means of scanning electron microscopy. The results show that the neural network has reached a remarkable accuracy of 98% and 82.5%, respectively, in tests with simulation and experimental data. In this way, rapid and precise thickness estimation may be realized within the tolerance range of 25 nm, offering a significant improvement over conventional measurement techniques.Article Citation - WoS: 11Citation - Scopus: 10Intercalation Leads To Inverse Layer Dependence of Friction on Chemically Doped Mos2(IOP Publishing, 2023) Açıkgöz, Oğulcan; Guerrero, Enrique; Yanılmaz, Alper; Dağdeviren, Ömür E.; Çelebi, Cem; Strubbe, David A.; Baykara, Mehmet Z.We present results of atomic-force-microscopy-based friction measurements on Re-doped molybdenum disulfide (MoS2). In stark contrast to the widespread observation of decreasing friction with increasing number of layers on two-dimensional (2D) materials, friction on Re-doped MoS2 exhibits an anomalous, i.e. inverse, dependence on the number of layers. Raman spectroscopy measurements combined with ab initio calculations reveal signatures of Re intercalation. Calculations suggest an increase in out-of-plane stiffness that inversely correlates with the number of layers as the physical mechanism behind this remarkable observation, revealing a distinctive regime of puckering for 2D materials.Article Citation - WoS: 5Citation - Scopus: 4Electromagnetically Induced Transparency and Absorption Cross-Over With a Four-Level Rydberg System(IOP Publishing, 2022) Oyun, Yağız; Çakır, Özgür; Sevinçli, SevilayElectromagnetically induced transparency (EIT) and absorption (EIA) are quantum coherence phenomena which result from the interference of excitation pathways. Combining these with Rydberg atoms have opened up many possibilities for various applications. We introduce a theoretical model to study Rydberg-EIT and Rydberg-EIA effects in cold Cs and Rb atomic ensembles in a four-level ladder type scheme taking into account van der Waals type interactions between the atoms. The proposed many-body method for analysis of such systems involves a self-consistent mean field approach and it produces results which display a very good agreement with recent experiments. Our calculations also successfully demonstrate experimentally observed EIT-EIA cross-over in the Rb case. Being able to simulate the interaction effects in such systems has significant importance, especially for controlling the optical response of these.Article Citation - WoS: 3Citation - Scopus: 5Physically Unclonable Security Patterns Created by Electrospinning, and Authenticated by Two-Step Validation Method(IOP Publishing, 2022) Taşcıoğlu, Didem; Atçı, Arda; Sevim Ünlütürk, Seçil; Özçelik, SerdarCounterfeiting is a growing economic and social problem. For anticounterfeiting, random and inimitable droplet/fiber patterns were created by the electrospinning method as security tags that are detectable under UV light but invisible in daylight. To check the authenticity of the original security patterns created; images were collected with a simple smartphone microscope and a database of the recorded original patterns was created. The originality of the random patterns was checked by comparing them with the patterns recorded in the database. In addition, the spectral signature of the patterns in the droplet/fiber network was obtained with a simple and hand-held spectrometer. Thus, by reading the spectral signature from the pattern, the spectral information of the photoluminescent nanoparticles was verified and thus a second-step verification was established. In this way, anticounterfeiting technology that combines ink formula, unclonable security pattern creation and two-level verification is developed.Article Citation - WoS: 20Citation - Scopus: 23Aluminum and Lithium Sulfur Batteries: a Review of Recent Progress and Future Directions(IOP Publishing, 2021) Akgenç, Berna; Sarıkurt, Sevil; Yağmurcukardeş, Mehmet; Ersan, FatihAdvanced materials with various micro-/nanostructures have attracted plenty of attention for decades in energy storage devices such as rechargeable batteries (ion- or sulfur based batteries) and supercapacitors. To improve the electrochemical performance of batteries, it is uttermost important to develop advanced electrode materials. Moreover, the cathode material is also important that it restricts the efficiency and practical application of aluminum-ion batteries. Among the potential cathode materials, sulfur has become an important candidate material for aluminum-ion batteries cause of its considerable specific capacity. Two-dimensional materials are currently potential candidates as electrodes from lab-scale experiments to possible pragmatic theoretical studies. In this review, the fundamental principles, historical progress, latest developments, and major problems in Li-S and Al-S batteries are reviewed. Finally, future directions in terms of the experimental and theoretical applications have prospected.Article Citation - WoS: 22Citation - Scopus: 23Bioactive Snail Mucus-Slime Extract Loaded Chitosan Scaffolds for Hard Tissue Regeneration: the Effect of Mucoadhesive and Antibacterial Extracts on Physical Characteristics and Bioactivity of Chitosan Matrix(IOP Publishing, 2021) Perpelek, Merve; Tamburacı, Sedef; Aydemir, Selma; Tıhmınlıoğlu, Funda; Baykara, Başak; Karakaşlı, Ahmet; Havıtçıoğlu, HasanBiobased extracts comprise various bioactive components and they are widely used in tissue engineering applications to increase bioactivity as well as physical characteristics of biomaterials. Among animal sources, garden snail Helix aspersa has come into prominence with its antibacterial and regenerative extracts and show potential in tissue regeneration. Thus, in this study, bioactive H. aspersa extracts (slime, mucus) were loaded in chitosan (CHI) matrix to fabricate porous scaffolds for hard tissue regeneration. Physical, chemical properties, antimicrobial activity was determined as well as in vitro bioactivity for bone and cartilage regeneration. Mucus and slime incorporation enhanced mechanical properties and biodegradation rate of CHI matrix. Scanning electron microscopy images showed that the average pore size of the scaffolds decreased with higher extract content. Mucus and slime extracts showed antimicrobial effect on two bacterial strains. In vitro cytotoxicity, osteogenic and chondrogenic activity of the scaffolds were evaluated with Saos-2 and SW1353 cell lines in terms of Alkaline phosphatase activity, biomineralization, GAG, COMP and hydroxyproline content. Cell viability results showed that extracts had a proliferative effect on Saos-2 and SW1353 cells when compared to the control group. Mucus and slime extract loading increased osteogenic and chondrogenic activity. Thus, the bioactive extract loaded CHI scaffolds showed potential for bone and cartilage regeneration with enhanced physical properties and in vitro bioactivity.Article Citation - WoS: 2Citation - Scopus: 2Mn2+ Ions Incorporated Into Znsxse1-X Colloidal Quantum Dots: Controlling Size and Composition of Nanoalloys and Regulating Magnetic Dipolar Interactions(IOP Publishing, 2021) Ünlütürk, Seçil Sevim; Akdoğan, Yaşar; Özçelik, SerdarA facile synthesis method is introduced how to prepare magnetically active ultraviolet emitting manganese ions incorporated into ZnSxSe1-x colloidal quantum dot (nanoalloy) at 110 degrees C in aqueous solutions. The reaction time is the main factor to control the hydrodynamic size from 3 to 10 nm and the precursor ratio is significant to tune the alloy composition. ZnS shell layer on the ZnSxSe1-x core was grown to passivate environmental effects. The nanoalloy has ultraviolet emission at 380 nm having a lifetime of 80 ns and 7% quantum yield. The incorporation of Mn2+ ions into the nanoalloys induced magnetic activity but did not modify the structure and photophysical properties of the nanoalloys. Colloidal and powdery samples were prepared and analyzed by electron paramagnetic resonance (EPR) spectroscopy. In the colloidal dispersions, EPR spectra showed hyperfine line splitting regardless of the Mn2+ ion fractions, up to 6%, indicating that Mn2+ ions incorporated into the nanoalloys were isolated. EPR signals of the powdery samples were broadened when the fraction of Mn2+ ions was higher than 0.1%. The EPR spectra were simulated to reveal the locations and interactions of Mn2+ ions. The simulations suggest that the Mn2+ ions are located on the nanoalloy surfaces. These findings infer that the magnetic dipolar interactions are regulated by the initial mole ratio of Mn/Zn and the physical state of the nanoalloys adjusted by preparation methods.Article Citation - WoS: 11Citation - Scopus: 11Enhanced Room Temperature Energy Storage Density of Bi(li1/3ti2 Substituted Bi0.5na0.5tio3-Batio3 Ceramics(IOP Publishing, 2021) Karakaya, Merve; Adem, UmutFor high power electronics applications, relaxor ferroelectrics are promising materials due to their superior energy storage properties. In this study, we investigate the energy storage properties of novel lead free relaxor ferroelectric ceramics (1-x)(0.92Bi(0.5)Na(0.5)TiO(3)-0.08BaTiO(3))-xBi(Li1/3Ti2/3)O-3 (abbreviated as BNT-8BT-xBLT). BNT-8BT composition which is close to morphotropic phase boundary was chosen as the base due to its large maximum polarization (P-m) and higher ratio of weakly polar tetragonal phase which is expected to facilitate ergodic relaxor behavior and improve energy storage density. The substitution of BLT to the BNT-8BT strongly disrupts the correlations between the polar nanoregions and the transition from nonergodic to ergodic relaxor state occurs already at x = 0.02 BLT at room temperature. Largest energy density (W-rec) at 61 kV cm(-1) was obtained for x = 0.02 sample (0.656 J cm(-3)), followed by x = 0.03 (W-rec = 0.614 J cm(-3)) and x = 0.05 (W-rec= 0.559 J cm(-3)). The x = 0.02 sample keeps its energy storage density at high temperatures (i.e. W-rec= 0.88 J cm(-3,) eta = 97%, E-m= 65 kV cm(-1) at 125 degrees C), while larger electric field (up to 89 kV cm(-1)) could be applied to the x = 0.05 sample with the smallest grain size and energy density of 1.03 J cm(-3) was reached at room temperature. Energy storage density values of BLT substituted materials normalized per unit applied electric field are promising among BNT-based materials.Article Citation - WoS: 22Citation - Scopus: 18Nuclear-Targeted Gold Nanoparticles Enhance Cancer Cell Radiosensitization(IOP Publishing, 2020) Pratx, Guillem; Özçelik, SerdarRadiation therapy aims to kill or inhibit proliferation of cancer cells while sparing normal cells. To enhance radiosensitization, we developed 40 nm-sized gold nanoparticles targeting the nucleus. We exploited a strategy that combined RGD and NLS peptides respectively targeting cancer cell and the nucleus to initiate cell-death activated by x-ray irradiation. We observed that the modified gold nanoparticles were either translocated in the nuclei or accumulated in the vicinity of the nuclei. We demonstrated that x-ray irradiation at 225 kVp energy reduced cell proliferation by 3.8-fold when the nuclear targeted gold nanoparticles were used. We determined that the radiation dose to have a 10% survival fraction was reduced from 11.0 Gy to 7.1 Gy when 10.0 mu g ml(-1)of the NLS/RGD/PEG-AuNP was incubated with A549 cancer cells. We conclude that the peptide-modified gold nanoparticles targeting the nucleus significantly enhance radiosensitization.Article Citation - WoS: 21Citation - Scopus: 22Green Function, Quasi-Classical Langevin and Kubo-Greenwood Methods in Quantum Thermal Transport(IOP Publishing, 2019) Sevinçli, Haldun; Roche, S.; Cuniberti, G.; Brandbyge, M.; Gutierrez, R.; Sandonas, L. MedranoWith the advances in fabrication of materials with feature sizes at the order of nanometers, it has been possible to alter their thermal transport properties dramatically. Miniaturization of device size increases the power density in general, hence faster electronics require better thermal transport, whereas better thermoelectric applications require the opposite. Such diverse needs bring new challenges for material design. Shrinkage of length scales has also changed the experimental and theoretical methods to study thermal transport. Unsurprisingly, novel approaches have emerged to control phonon flow. Besides, ever increasing computational power is another driving force for developing new computational methods. In this review, we discuss three methods developed for computing vibrational thermal transport properties of nano-structured systems, namely Green function, quasi-classical Langevin, and Kubo-Green methods. The Green function methods are explained using both nonequilibrium expressions and the Landauer-type formula. The partitioning scheme, decimation techniques and surface Green functions are reviewed, and a simple model for reservoir Green functions is shown. The expressions for the Kubo-Greenwood method are derived, and Lanczos tridiagonalization, continued fraction and Chebyshev polynomial expansion methods are discussed. Additionally, the quasi-classical Langevin approach, which is useful for incorporating phonon-phonon and other scatterings is summarized.