WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7150
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Article Salt Tolerance Potential of Selected Solanum Pennellii Introgression Lines: Unique Shoot and Root Responses(Wiley, 2025) Yildiz, Hatice Selale; Doganlar, Sami; Frary, AnneSalinity stress affects agricultural lands worldwide, causing serious yield losses. Investigation of the salinity response and tolerance mechanisms of crop plants and their wild relatives is important for developing tolerant varieties. In this study, three Solanum pennellii introgression lines (IL2-5, IL7-4-1, IL8-3), reported to be tolerant to abiotic stress, were investigated for their physiological and molecular responses to severe salinity (200 mM NaCl). The findings emphasized the variety of different responses that even highly genetically similar lines can have to stress. In IL2-5, a lack of significant root and shoot growth reduction due to salinity was associated with the up-regulation of vacuolar ion transporter genes (NHX1 and NHX3) and the lowest Na+ and Cl- accumulation in leaves, while beneficial K+ levels were preserved. In IL7-4-1, lateral root development was exceptionally strong compared to the other lines, with high Na+ and Cl- accumulation in leaves due to this unique root architecture. Despite this, the negative effects were lower on IL7-4-1's shoot growth than in IL8-3 and the control cultivar M82 due to effective reactive oxygen species management and increased superoxide gene expression. IL8-3's growth response was most similar to M82; however, it was better able to maintain beneficial K+ levels under salt stress. Overall, it was revealed that S. pennellii has multiple salt tolerance mechanisms associated with specific chromosomal segments and unique plant architecture. In addition to contributing to a better understanding of the mechanisms of salinity tolerance, these findings provide important information for increasing tolerance through targeted breeding.Article Storage Protein Allergen Sensitization Patterns in Children: Insights from Multiplex Microarray Profiling and Hierarchical Clustering(Wiley, 2025) Caka, Canan; Ozcivici, Engin; Karakus, Ceyda Oksel; Sekerel, Bulent EnisBackground Storage proteins (SPs), including 2S albumins, vicilins, and legumins, are key allergenic molecules (AMs) of peanuts, tree nuts (TNs), and sesame. Their structural stability contributes to allergenicity and sensitization. This study explored SP AM clustering patterns and evaluated the test performance of multiplex microarray (MM) testing in a pediatric cohort. Methods We retrospectively analyzed 350 children (median age: 3.7 years) with detectable SP sensitizations (>= 0.1 kU(A)/L) using the ALEX(2) MM platform. Sensitization interrelationships were analyzed using correlation heatmaps, hierarchical clustering (HC), dimensionality reduction, and feature elimination. Predictive utility was assessed through ROC curve analysis at different sensitization cut-offs (>0.1 and >0.3 kU(A)/L) and total IgE thresholds (>0, >20, and >50 kU/L). Results HC identified a broad SP cluster spanning peanuts, TNs, sesame, poppy seed, and buckwheat. Strong correlations and early HC linkages suggested extensive cross-sensitization (e.g., Ana o 3-Pis v 1 and Jug r 4-Cor a 9), alongside evidence of co-sensitization and molecular spreading. Unexpected clustering of structurally dissimilar peanut and pistachio AMs pointed to shared epitopes and/or cross-contamination. 2S albumins (Ara h 2, Cor a 14, Jug r 1, Ana o 3, and Ses i 1) were most predictive for clinical reactivity. Lower cut-offs and exclusion of patients with low total IgE improved test performance. Alpha-hairpinin (Pap s 2S albumin) showed potential as specific markers. Conclusions MM testing enables detailed SP sensitization profiling. Cluster-based interpretation may clarify cross- vs. co-sensitization, supporting informed clinical decisions. Use of recombinant AMs and IgE stratification may further enhance MM utility in food allergy diagnostics.Article Nanoencapsulation of Hydroxytyrosol Extract of Fermented Olive Leaf Brine Using Proniosomes(Wiley, 2025) Kadiroglu, Pinar; Kilincli, Betul; Ilgaz, Ceren; Bayindir, Zerrin Sezgin; Kelebek, Hasim; Helvacioglu, Selin; Ozhan, GunesBACKGROUND: Olive leaves are rich in bioactive compounds with potential health benefits; however, their limited bioavailability and stability hinder their effective utilization. Emerging technologies, nanocarrier-based delivery systems, have shown promise in enhancing these properties. RESULTS: The optimal conditions for proniosome formulation were 50 rpm rotational speed and 35 degrees C, achieving 81.20 +/- 0.80% encapsulation efficiency. Particle sizes ranged from 188.6 to 248.9 nm, with a zeta potential of similar to-30 mV, indicating high stability and resistance to aggregation. Advanced instrumental analysis confirmed interactions between the extract and proniosome components. After 30 days at 4 degrees C, extract-loaded proniosomes maintained better homogeneity and lower polydispersity index. Cytotoxicity studies showed that both the extract and its proniosomal form were nontoxic to HEK293T cells up to 200 mu g mL(-1). In zebrafish assays, minimal larval mortality was observed up to 3200 mu g mL(-1) for the extract, while no mortality occurred up to 1600 mu g mL(-1) for the proniosomal extract, highlighting its improved safety profile. CONCLUSION: The findings from this research could contribute to the advancement of sustainable and health-promoting food innovations by integrating cutting-edge nanotechnology-driven encapsulation strategies into plant-based food formulations. (c) 2025 Society of Chemical Industry.Article Citation - Scopus: 1Transforming Crete's Sustainable Energy Landscape: a Modular Energy Island Approach(Wiley, 2025) Mendez-Morales, Mariela; Karipoglu, Fatih; Ivankovic, Marin; Lukic, Tamara; Rebelo, CarlosThe present paper investigates the conceptual design of a floating offshore renewable energy system-an energy island-developed to provide a sustainable long-term solution to support and expedite the transition toward renewable energy sources (RESs) as a case study in Crete Island, Greece. The optimal site selection in Crete's coastal waters was detected by carefully evaluating the potential for wind, solar, and wave energy alongside environmental and social considerations. Later, the current electricity demand was analyzed, leading to the identification of suitable technologies for renewable energy harvesting and the conceptualization of a floating structure. The findings of this research emphasize the viability of integrating diverse energy sources as a pivotal step for Crete Island to advance toward energy independence and environmental sustainability. Crete's abundant wind and solar resources underscore its capacity to host innovative projects, warranting further exploration into energy surplus storage and export.Conference Object Construction of the Living Networks in Artificial Tissues: Vascularization in Tissue Engineering(Wiley, 2025) Dikici, SerkanConference Object The Interplay Between Sirtuin 1 (Sirt1) and Autophagy/Mitophagy in Serum-Starved Sh-Sy5y Cells(Wiley, 2025) Kartal, Yasemin; Tokat, Unal Metin; Bozkurt, Berkay; Ugur, Pelin Kelicen; Budak, Murat TimurArticle Citation - WoS: 2Citation - Scopus: 2New Copper and Cobalt Complexes Based on a Fluorinated Pyrazole Derivative, Synthesis, Characterization and Antibacterial Activity(Wiley, 2025) Amin, Mina A.; Diker, Halide; Sahin, Onur; Varlikli, Canan; Soliman, Ahmed A.Two copper and cobalt complexes based on 3-(trifluoromethyl)-4-((3-(trifluoromethyl)phenyl)diazenyl)-1H-pyrazol-5-ol (Httdp) have been prepared and characterized using different physicochemical techniques. The crystal structure of the copper complex has been proven to be a square pyramidal, and the cobalt complex has an octahedral structure. DFT calculations of the complexes were performed, and the energy gaps between the HOMO-LUMO of the complexes (-3.38676 to -3.18138 eV) and the Cu (II) complex reflect a higher relative stability compared with Httdp and the Co (II) complex. The antibacterial activities of the two complexes were evaluated. The Co (II) complex demonstrated the highest antibacterial activity against various bacteria compared with Httdp and the Cu (II) complex. The mean inhibition zones exhibited by the Co (II) complex showed the highest activities toward the Gram-negative bacterial strains with mean inhibition zones of 30.3 +/- 0.6 (Staphylococcus aureus) and 25.7 +/- 0.6 (Bacillus subtilis) mm. Docking studies were carried out using S. aureus tyrosyl-tRNA synthetase (PDB ID: 1JIJ) to assess the antimicrobial activities, proving that the complexes were efficient for the protein.Article Citation - WoS: 4Citation - Scopus: 5Near-Infrared Emissive Super Penetrating Conjugated Polymer Dots for Intratumoral Imaging in 3d Tumor Spheroid Models(Wiley, 2024) Karabacak, Soner; Coban, Basak; Yildiz, Ahu Arslan; Yildiz, Umit HakanThis study describes the formation of single-chain polymer dots (Pdots) via ultrasonic emulsification of nonionic donor-acceptor-donor type (D-A-D) alkoxy thiophene-benzobisthiadiazole-based conjugated polymers (Poly BT) with amphiphilic cetyltrimethylammonium bromide (CTAB). The methodology yields Pdots with a high cationic surface charge (+56.5 mV +/- 9.5) and average hydrodynamic radius of 12 nm. Optical characterization reveals that these Pdots emit near-infrared (NIR) light at a maximum wavelength of 860 nm owing to their conjugated polymer backbone consisting of D-A-D monomers. Both colloidal and optical properties of these Pdots make them promising fluorescence emissive probes for bioimaging applications. The significant advantage of positively charged Pdots is demonstrated in diffusion-limited mediums such as tissues, utilizing human epithelial breast adenocarcinoma, ATCC HTB-22 (MCF-7), human bone marrow neuroblastoma, ATCC CRL-2266 (SH-SY5Y), and rat adrenal gland pheochromocytoma, CRL-1721 (PC-12) tumor spheroid models. Fluorescence microscopy analysis of tumor spheroids from MCF-7, SH-SY5Y, and PC-12 cell lines reveals the intensity profile of Pdots, confirming extensive penetration into the central regions of the models. Moreover, a comparison with mitochondria staining dye reveals an overlap between the regions stained by Pdots and the dye in all three tumor spheroid models. These results suggest that single-chain D-A-D type Pdots, cationized via CTAB, exhibit long-range mean free path of penetration (approximate to 1 mu m) in dense mediums and tumors. The single chain near infrared (NIR) emissive Pdots with high cationic surface charge enable penetration in dense medium such as tumor spheroids. Both colloidal and optical properties of Pdots make them promising fluorescent probe in bioimaging. imageArticle Citation - WoS: 1A Wearable Device Integrated With Deep Learning-Based Algorithms for the Analysis of Breath Patterns(Wiley, 2023) Tarim, Ergun Alperay; Erimez, Busra; Degirmenci, Mehmet; Tekin, H. Cumhur[No Abstract Available]Article Citation - WoS: 5Citation - Scopus: 5Sioc Foam-Aerogel Composites: Optimal Balance of Lightness and Excellent Thermal Insulation(Wiley, 2024) Icin, Oyku; Abebe, Adane Muche; Soraru, Gian Domenico; Vakifahmetoglu, CekdarFoam-aerogel composites are synthesized in polymeric, hybrid, and ceramic states by completing the open cells of the foam with a solution forming a wet gel, carbon dioxide (CO2) supercritically dried, and pyrolyzed. Thermal diffusivity measurements are conducted using the laser flash, and for mechanical performance, cold crushing tests are done to obtain compressive strengths. Samples possess a range of specific surface area (SSA) values up to similar to 650 m2/g contingent upon the material state, that is, polymeric, hybrid, or ceramic. While SSA values can be deliberately altered, almost all samples demonstrated a total porosity of similar to 90 vol%, with superb specific compressive strength reaching around 2 MPa. In addition to adjustable surface characteristics granting hydrophobic and hydrophilic features, the study revealed the potential use of these foam-aerogel composites as thermal insulators with low thermal conductivities of 0.02 W<middle dot>m-1<middle dot>K-1 at RT and 0.05 W<middle dot>m-1<middle dot>K-1 at 500 degrees C. When exposed directly to a butane flame gun with a flame temperature reaching similar to 1200 degrees C, from the backside of a 5 mm-thick foam-aerogel composite, only similar to 200 degrees C is recorded, which is lower than a comparable commercial insulator panel tested under the same conditions.