WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7150
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Article Citation - WoS: 3Citation - Scopus: 3Shallow Shell Ssta63 Resin: a Rapid Approach To Remediation of Hazardous Nitrate(Royal Society of Chemistry, 2024) Cendik, Elif; Saygi, Mugenur; Recepoğlu, Yaşar Kemal; Arar, OzgurThis study examines the potential of Purolite Shallow Shell (TM) SSTA63 anion exchange resin for mitigating nitrate ion (NO3-) contamination in aqueous environments. Through systematic experimentation, including dosage optimization, pH dependency, kinetic and desorption studies, we investigate the sorption behavior and practical applications of the resin. Results indicate that the resin effectively removes NO3- ions, with maximum efficiency achieved within 10 minutes. When 0.025 g of resin was used, 75% of NO3- was removed, whereas with 0.05 g, 89% was removed, and with 0.1 g of resin, 95% was removed. At pH 1, approximately 50% of NO3- ions were removed, with removal efficiency reaching 97% between pH 4 and 10. Sorption isotherms affirm the suitability of the Langmuir model for the current investigation. The monolayer maximum sorption capacity (qmax) value was found to be 53.65 mg g-1. The resin demonstrates robust desorption capabilities using 0.1 M hydrochloric acid (HCl), effectively desorbing NO3- above 99%, indicating easy NO3- desorption and resin regeneration. The presence of coexisting ions such as chloride (Cl-), sulfate (SO42-), and phosphate (PO43-) showed a minimal impact on NO3- removal in individual binary mixtures, with efficiencies exceeding 93%, suggesting a strong selectivity of the resin towards NO3-. Purolite SSTA63 anion exchange resin exhibited a high affinity for NO3- ions, even over other competing ions, despite the general trend of ion exchange resins to favor ions with a higher atomic number and valence. Overall, this resin presents a promising solution for NO3- removal, with implications for water treatment and environmental remediation. This study explores the potential of Purolite Shallow Shell (TM) SSTA63 anion exchange resin for mitigating nitrate ion (NO3-) contamination in aqueous environments.Article Citation - WoS: 1Citation - Scopus: 1Inhibition of Caco3 Growth and Synthesis of Submicron Particles by Preferential Adsorption of Additive Ca2+ Ions on Fresh Precipitates(Royal Society of Chemistry, 2022) Majekodunmi, Olukayode T.; Kılıç Özdemir, Sevgi; Özdemir, EkremThis study demonstrates a method to inhibit the growth of CaCO3 and synthesize submicron particles in a chemical precipitation process under ambient and high supersaturation conditions. Equimolar CaCl2 and Na2CO3 solutions were mixed in a model tubular reactor at a constant flow rate, and the precipitates were continuously dispersed in stirred 250 mL of 10 mM Ca(OH)2 solution. This approach resulted in the synthesis of colloidally stable submicron CaCO3 particles for a precipitant concentration ≤75 mM. Varying the precipitates’ retention time in the tubular reactor had no significant effects on the particle size and colloidal stability. Time-dependent changes in the mean size, crystal form, morphology and specific surface area of the synthesized particles were also studied. For a precipitant concentration of 75 mM, the particles were monodispersed and porous spindle-like scalenohedral crystals which gradually grew in all faces as more precipitates were fed into the Ca(OH)2 solution. The mean hydrodynamic size of the particles was ∼850 nm at the 8th minute. However, in the absence of additive Ca2+ ions, the particles obtained at the 8th minute were polydisperse mixtures of vaterite and rhombohedral calcite particles greater than 4 μm in size. The results show that free additive Ca2+ ions are irreversibly adsorbed onto the particles as the precipitates dissolve and recrystallize into smaller crystals upon reaching the Ca(OH)2 solution.Article Citation - WoS: 16Citation - Scopus: 15Ultrasound-Assisted Dopamine Polymerization: Rapid and Oxidizing Agent-Free Polydopamine Coatings on Membrane Surfaces(Royal Society of Chemistry, 2021) Cihanoğlu, Aydın; Schiffman, Jessica D.; Alsoy Altınkaya, SacideHerein, we report a controllable pathway to accelerate the polymerization kinetics of dopamine using ultrasound as a trigger. The use of ultrasound was demonstrated to dramatically accelerate the slow liquid phase reaction kinetics and increase the deposition rate of the polydopamine coating on the surface of polymeric membranes.Article Citation - WoS: 34Doxorubicin Conjugated, Crosslinked, Pegylated Particles Prepared Via One-Pot Thiol-Ene Modification of a Homopolymer Scaffold: Synthesis and in Vitro Evaluation(Royal Society of Chemistry, 2011) Wong, Lingjiun; Kavallaris, Maria; Bulmuş, VolgaDoxorubicin (Dox)-conjugated, poly(ethylene glycol) (PEG) shielded, reversibly crosslinked particles were prepared by a one-pot thiol-ene reaction from a RAFT-synthesized well-defined homopolymer scaffold, poly(pyridyldisulfide ethylmethacrylate) (PPDSM). Dox and PEG modified with maleimide end-groups (mal-Dox and mal-PEG), were covalently attached in one pot to free thiol groups of PPDSM (M-n = 8900 g mol(-1) and PDI = 1.18) in the presence of a disulfide reducing agent. similar to 50% of the total pyridyldisulfide units were conjugated with Dox and PEG (with an equal mol ratio). Particles with an average hydrodynamic diameter of 192 +/- 28 nm were observed to form after conjugation. Incubation of these particles with a disulfide reducing agent resulted in the disassociation of the particles. The release of Dox from the particles was pH dependent. The Dox-conjugated PEGylated particles (with a Dox content of 8 wt%) inhibited the viability of human cervical carcinoma cells (HeLa) with an IC50 value of 8 X 10(-7) M, determined by an Alamar Blue assay, while the IC50 of free Dox was 1 X 10(-7) M. The fluorescence microscopy analyses of the HeLa cells after incubation with the particles for varying times showed that the Dox carried by the particles is taken up efficiently by the cells.Article Citation - WoS: 6Citation - Scopus: 6Effect of Ammonia on Cobalt Fischer-Tropsch Synthesis Catalysts: a Surface Science Approach(Royal Society of Chemistry, 2019) Kızılkaya, Ali Can; Niemantsverdriet, J. W.; Weststrate, C. J.Ammonia adsorption and decomposition on defect-rich hcp-Co(0001) surfaces were investigated under ultra-high vacuum conditions in order to provide a fundamental explanation for industrially observed ammonia poisoning of cobalt based Fischer-Tropsch synthesis (FTS) catalysts. Temperature-programmed desorption, infrared spectroscopy and work function measurements indicate that undercoordinated sites bind ammonia stronger than sites on flat Co(0001), and they also induce its dehydrogenation. Density functional theory calculations were employed to explore the reactivity of defective Co surfaces using the fcc-Co(211) as a model. The results indicate that the decomposition products (NH x ) adsorb strongly on or around the step site on fcc-Co(211). We find that NH (+2H ad ), adsorbed in the threefold site on the upper terrace, is equally stable as NH 2 (+H ad ), adsorbed in the bridge position at the step edge, both being significantly more stable than the equivalent species adsorbed on the flat Co(0001). The calculated activation barriers for NH 3,ad dehydrogenation steps are in reasonable agreement with the barriers obtained by fitting experimental data. Based on these fundamental insights, poisoning of cobalt nanoparticles during FTS by NH 3 contaminants can be linked mainly to the blocking of undercoordinated sites by strongly adsorbed NH 2 species.Article Citation - WoS: 17Citation - Scopus: 22Responsive pentablock copolymers for siRNA delivery(Royal Society of Chemistry, 2015) Uz, Metin; Mallapragada, Surya K.; Alsoy Altınkaya, SacideIn this study, temperature and pH responsive cationic and amphiphilic pentablock copolymers, which consist of the temperature responsive triblock Pluronic F127 sandwiched between pH responsive PDEAEM (poly(2-diethylaminoethyl methacrylate)) end blocks, were used for the first time in the development of polyplex and gold nanoparticle (AuNP) based multicomponent siRNA delivery systems (MCSs). Copolymers in both systems protected siRNA from external effects, provided cell entry and endosomal escape. The thermoreversible micellization of the hydrophobic PPO block facilitated the cellular entry while the PDEAEM blocks enhanced the endosomal escape through protonated tertiary amine groups by pH buffering. The synergistic advantages of the different blocks showed an enhanced effect in the MCSs due to attachment and surface configuration reasons. The siRNA transfection efficiency of MCSs against luciferase expressing SKOV3 cells was 15% higher than both the polyplexes alone and the commercial siRNA transfection agent Lipofectamine RNAiMax at the same applied dose, without any toxicity. The results indicated that the multicomponent systems based on the responsive cationic pentablock copolymers and gold nanoparticles have promising potential as an efficient siRNA delivery vector for future applications.Article Citation - WoS: 11Citation - Scopus: 12Calf Thymus Dna Characterization and Its Adsorption on Different Silica Surfaces(Royal Society of Chemistry, 2015) Yetgin, Senem; Balköse, DevrimDNA adsorption is the initial stage of gene therapy for drug delivery systems and solid phase extraction methods of DNA purification. High pore volume and high adsorption capacity are simple requirements not only for producing 'smart' drug delivery systems but also the development of purification kits. Silica is the most used material for this purpose. The present study aimed at elucidating the calf thymus DNA biosorption process by the characterization of calf thymus DNA and silica to increase the efficiency of the currently used silica material. Mesoporous silica has long been used for DNA adsorption and silica aerogel is the new adsorbent investigated in the present study. When DNA solution was freeze dried on a silica wafer, self-assembled super helices formed as shown by atomic microscopy (AFM). Thus DNA existed not as single molecules but as large sized agglomerates in water. Thus it could be adsorbed in the macropores and on the external surface of adsorbents. Adsorption of calf thymus DNA to a silica aerogel, a mesoporous silica gel and a silica wafer was investigated in the present study. Silica aerogel was synthesized from TEOS by a supercritical ethanol drying process. The DNA adsorption capacity of the silica aerogel was nearly two times that of the mesoporous silica gel due to its macroporous structure and its higher silanol content. Silica aerogel was found to be a very promising material for DNA adsorption. Therefore silica aerogel can be considered as a good candidate for the delivery of DNA.Article Citation - WoS: 31Citation - Scopus: 32Synthesis, Self-Assembly and Stimuli Responsive Properties of Cholesterol Conjugated Polymers(Royal Society of Chemistry, 2012) Sevimli, Sema; Sagnella, Sharon; Kavallaris, Maria; Bulmuş, Volga; Davis, Thomas P.Reversible addition-fragmentation chain transfer (RAFT) polymerization was used to generate well-defined pH-responsive biofunctional polymers as potential 'smart' gene delivery systems. A series of five poly(dimethylamino ethyl methacrylate-co-cholesteryl methacrylate) P(DMAEMA-co-CMA) statistical copolymers, with similar molecular weights and varying cholesterol content, were prepared. The syntheses, compositions and molecular weight distributions for P(DMAEMA-co-CMA) were monitored by nuclear magnetic resonance (NMR), solid-state NMR and gel permeation chromatography (GPC) evidencing well-defined polymeric structures with narrow polydispersities. Aqueous solution properties of the copolymers were investigated using turbidimetry and light scattering to determine hydrodynamic diameters and zeta potentials associated with the phase transition behaviour of P(DMAEMA-co-CMA) copolymers. UV-Visible spectroscopy was used to investigate the pH-responsive behaviour of copolymers. Hydrodynamic radii were measured in the range 10-30 nm (pH, temperature dependent) by dynamic light scattering (DLS). Charge studies indicated that P(DMAEMA-co-CMA) polymers have an overall cationic charge, mediated by pH. Potentiometric studies revealed that the buffering capacity and pK a values of polymers were dependent on cholesterol content as well as on cationic charge. The buffering capacity increased with increasing charge ratio, overall demonstrating transitions in the pH endosomal region for all five copolymeric structures. Cell viability assay showed that the copolymers displayed increasing cytotoxicity with decreasing number of cholesterol moieties. These preliminary results show the potential of these well-defined P(DMAEMA-co-CMA) polymers as in vitro siRNA delivery agents.Article Citation - WoS: 22Citation - Scopus: 25The Endocytic Pathway and Therapeutic Efficiency of Doxorubicin Conjugated Cholesterol-Derived Polymers(Royal Society of Chemistry, 2015) Sevimli, Sema; Sagnella, Sharon; Macmillan, Alexander; Whan, Renee; Kavallaris, Maria; Bulmuş, Volga; Davis, Thomas P.Previously synthesized poly(methacrylic acid-co-cholesteryl methacrylate) P(MAA-co-CMA) copolymers were examined as potential drug delivery vehicles. P(MAA-co-CMA) copolymers were fluorescently labelled and imaged in SHEP and HepG2 cells. To understand their cell internalization pathway endocytic inhibition studies were conducted. It was concluded that P(MAA-co-CMA) are taken up by the cells via clathrin-independent endocytosis (CIE) (both caveolae mediated and cholesterol dependent endocytosis) mechanisms. The formation and characterization of P(MAA-co-CMA)-doxorubicin (DOX) nanocomplexes was investigated by fluorescence lifetime imaging microscopy (FLIM), UV-Visible spectroscopy (UV-Vis) and dynamic light scattering (DLS) studies. The toxicity screening between P(MAA-co-CMA)-DOX nanocomplexes (at varying w/w ratios) and free DOX, revealed nanocomplexes to exhibit higher cytotoxicity towards cancer cells in comparison to normal cells. FLIM and confocal microscopy were employed for investigating the time-dependent release of DOX in SHEP cells and the cellular uptake profile of P(MAA-co-CMA)-DOX nanocomplexes in cancer and normal cell lines, respectively. The endocytic pathway of P(MAA-co-CMA)-DOX nanocomplexes were examined in SHEP and HepG2 cells via flow cytometry revealing the complexes to be internalized through both clathrin-dependent (CDE) and CIE mechanisms. The drug delivery profile, reported herein, illuminates the specific endocytic route and therapeutic efficiency of P(MAA-co-CMA)-DOX nanocomplexes strongly suggesting these particles to be promising candidates for in vivo applications.Article Citation - WoS: 20Citation - Scopus: 22A New Proton Sponge Polymer Synthesized by Raft Polymerization for Intracellular Delivery of Biotherapeutics(Royal Society of Chemistry, 2014) Kurtuluş, Işıl; Yılmaz, Gökhan; Üçüncü, Muhammed; Emrullahoğlu, Mustafa; Becer, C. Remzi; Bulmuş, VolgaA spermine-like polymer was synthesized via reversible addition- fragmentation chain transfer polymerization as a potential endosomal escaping agent. A new methacrylate monomer, 2-((tert-butoxycarbonyl)(2-((tert- butoxycarbonyl)amino)ethyl)amino)ethylmethacrylate (BocAEAEMA), was prepared and then polymerized via RAFT polymerization at constant monomer or initiator concentration at varying [M]/[R]/[I] ratios. In all polymerizations, ln[M] 0/[M] increased linearly with time. The linear increase in M n with monomer conversion was also observed. P(BocAEAEMA)s with controlled molecular weights and narrow molecular weight distributions were obtained. The in vitro cytotoxicity and proton sponge capacity of deprotected polymers P(AEAEMA) were investigated in comparison with a widely used endosomal-disruptive polymer, PEI. P(AEAEMA)s were found to possess proton sponge capacity comparable with PEI. More importantly, P(AEAEMA)s were not toxic on NIH 3T3 cells at concentrations where PEI (25 kDa) was highly toxic (0.4 μM and above). P(AEAEMA) was able to fully condense a DNA fragment at nitrogen/phosphate (N/P) ratios of 10 and above, as evidenced by gel electrophoresis. P(BocAEAEMA) was then chain-extended with a model sugar monomer, mannose-acrylate (ManAc), to yield P(AEAEMA)-b-P(ManAc) block copolymers, to potentially provide cell-recognition ability to the polyplex particles. Although the presence of the P(ManAc) block partially inhibited the interaction of P(AEAEMA) with DNA, P(AEAEMA)13-b-P(ManAc)7 was able to form polyplexes with DNA at N/P ratios ranging between 20/1 and 2/1. Dynamic light scattering measurements showed that while P(AEAEMA) (M n = 5.5 kDa) and DNA formed polyplex particles having a hydrodynamic diameter (Dh) of 125 ± 51 nm, P(AEAEMA)13-b- P(ManAc)7 and DNA formed particles with a smaller Dh of 38 ± 10 nm.