WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7150
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Review Citation - WoS: 30Citation - Scopus: 33Molecular Separation by Using Active and Passive Microfluidic Chip Designs: a Comprehensive Review(Wiley, 2023) Ebrahimi, Aliakbar; Didarian, Reza; Shih, Chih-Hsin; Nasseri, Behzad; Ethan Li, Yi-Chen; Shih, Steven; İçöz, Kutay; Tarım, Ergün Alperay; Akpek, Ali; Çeçen, Berivan; Bal Öztürk, Ayça; Güleç, Kadri; Tarım, Burcu Sırma; Tekin, Hüseyin CumhurSeparation and identification of molecules and biomolecules such as nucleic acids, proteins, and polysaccharides from complex fluids are known to be important due to unmet needs in various applications. Generally, many different separation techniques, including chromatography, electrophoresis, and magnetophoresis, have been developed to identify the target molecules precisely. However, these techniques are expensive and time consuming. “Lab-on-a-chip” systems with low cost per device, quick analysis capabilities, and minimal sample consumption seem to be ideal candidates for separating particles, cells, blood samples, and molecules. From this perspective, different microfluidic-based techniques have been extensively developed in the past two decades to separate samples with different origins. In this review, “lab-on-a-chip” methods by passive, active, and hybrid approaches for the separation of biomolecules developed in the past decade are comprehensively discussed. Due to the wide variety in the field, it will be impossible to cover every facet of the subject. Therefore, this review paper covers passive and active methods generally used for biomolecule separation. Then, an investigation of the combined sophisticated methods is highlighted. The spotlight also will be shined on the elegance of separation successes in recent years, and the remainder of the article explores how these permit the development of novel techniques. © 2023 The Authors. Advanced Materials Interfaces published by Wiley-VCH GmbH.Article Citation - WoS: 11Citation - Scopus: 12Treatment of Sugar Industry Wastewater by Using Subcritical Water as a Reaction Media(Wiley, 2023) Orak, Ceren; Öcal, Bulutcem; Yüksel, AslıThe sugar industry is one of the most wastewater-producing industries and it contains high content of organic and inorganic substances. Treating and reusing wastewater has significant importance because sugar industry needs to use a high volume of water. In this study, sugar industry wastewater was treated under subcritical conditions and the impacts of reaction temperature and duration over TOC removal percentage were investigated. Additionally, the impact of NaOH concentration over TOC removal percentage was examined. The highest TOC removal was obtained almost 95 % in the presence of 0.1 M of NaOH at 240 degrees C for 90 min of reaction duration. Treatment of sugar industry wastewater by subcritical water oxidation followed the second-order reaction kinetic model and the activation energy was found as 11.41 kJ/mol. Furthermore, the intermediate products were identified via GC-MS.Article Citation - WoS: 3Citation - Scopus: 4Microfluidic-Assisted Preparation of Nano and Microscale Chitosan Based 3d Composite Materials: Comparison With Conventional Methods(Wiley, 2022) Kimna, Ceren; Değer, Sibel; Tamburacı, Sedef; Tıhmınlıoğlu, FundaAlthough nanofillers contribute to improved physical characteristics and biological functionalities of polymer-based biomaterials, their dispersion in polymer matrices is still a challenging issue in terms of obtaining consistency for the inherent properties. To tackle this problem, homogenization techniques are applied to disperse the nanofillers in such polymers, however, these methods can cause undesired changes especially in the rheological properties and the physical structure of the biopolymer matrices. Recently, as a novel homogenization technique, microfluidization has been used to homogenize polymer nanocomposites to minimize these limitations. In this study, two different nanocomposite structures as chitosan/montmorillonite (CS/MMT) and chitosan/polyhedral oligomeric silsesquioxane nanocages (CS/POSS) were homogenized with microfluidization and investigated in terms of physical alterations. Furthermore, the effect of microfluidizer technique on material characteristics was compared with conventional homogenization techniques, i.e., ultrasonic bath and sonication in terms of solution, nano – (e.g., hydrodynamic size, drug encapsulation) and macroscopic material characteristics (e.g., porosity, mechanical properties, swelling and thermal degradation). It was found that the microfluidizer homogenization improves the physical characteristics in both nano and macroscale materials: Nanospheres obtained from CS/MMT composites showed enhanced stability, uniform size distribution (<100 nm, PDI: [removed]50%) whereas 3D porous CS/POSS scaffolds showed improved structural uniformity (i.e., homogeneous and interconnected microstructure) and enhanced thermal and mechanical properties. The obtained results indicate that the microfluidizer homogenization ensures a successful nanofiller dispersion in polymer matrices, thereby improving the biomaterial characteristics impressively compared to the sonication methods.Article Citation - WoS: 7Citation - Scopus: 7Synthesis and Characterization of Single-Walled Carbon Nanotube: Cyto-Genotoxicity in Allium Cepa Root Tips and Molecular Docking Studies(Wiley, 2022) İnce Yardımcı, Atike; İstifli, Erman Salih; Açıkbaş, Yaser; Liman, Recep; Yağmurcukardeş, Nesli; Yılmaz, Selahattin; Ciğerci, İbrahim HakkıHerein, single-walled carbon nanotubes (SWCNTs) were synthesized by the thermal chemical vapor deposition (CVD) method, and characterized by scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX), transmission electron microscopy (TEM), Raman spectroscopy, dynamic light scattering (DLS), and thermo-gravimetric analysis (TGA). The results indicated that obtained nanotubes were SWCNTs with high crystallinity and their average diameter was 10.15 ± 3 nm. Allium cepa ana–telophase and comet assays on the root meristem were employed to evaluate the cytotoxic and genotoxic effects of SWCNTs by examining mitotic phases, mitotic index (MI), chromosomal aberrations (CAs), and DNA damage. A. cepa root tip cells were exposed to SWCNTs at concentrations of 12.5, 25, 50, and 100 μg/ml for 4 h. Distilled water and methyl methanesulfonate (MMS, 10 μg/ml) were used as the negative and positive control groups, respectively. It was observed that MIs decreased statistically significantly for all applied doses. Besides, CAs such as chromosome laggards, disturbed anaphase–telophase, stickiness and bridges and also DNA damage increased in the presence of SWCNTs in a concentration-dependent manner. In the molecular docking study, the SWCNT were found to be a strong DNA major groove binder showing an energetically very favorable binding free energy of −21.27 kcal/mol. Furthermore, the SWCNT interacted effectively with the nucleotides on both strands of DNA primarily via hydrophobic π and electrostatic interactions. As a result, cytotoxic and genotoxic effects of SWCNTs in A. cepa root meristematic cells which is a reliable system for assessment of nanoparticle toxicology were demonstrated in this study.Article Citation - WoS: 21Citation - Scopus: 21Graphene-Supported Lafeo3 for Photocatalytic Hydrogen Energy Production(Wiley, 2021) Orak, Ceren; Yüksel, AslıHydrogen is a green, environmentally benign and sustainable energy source with no harmful combustion products to fulfil the increasing energy demand. Photocatalytic oxidation has various advantageous to produce hydrogen from different sources such as wastewater, alcohol solutions using different types of catalysts. Sucrose solution was chosen as a model solution to evolve hydrogen using LFO and GLFO catalysts under solar light irradiation, and graphene was used as a catalyst support to enhance the amount of produced hydrogen amount. A characterization study, which consists of SEM-EDX, BET, XRD, PL, TEM, XPS and FT-IR analyses, was carried out. A full factorial design was created via Minitab 18 to analyse the factors affecting the produced hydrogen amount, which are pH, catalyst loading, H2O2 concentration and graphene content statistically. Based on the results, graphene content is an important parameter and pH and H2O2 concentration have a synergetic effect over hydrogen production. Additionally, the effects of calcination temperature, pH, H2O2 concentration and catalyst loading over produced gases were investigated. The best promising result was obtained as 3388 mu mol/g(cat) at the following reaction conditions: 7.5 of pH, 0.1 g L-1 catalyst loading (GLFO, which is calcined at 700 degrees C) and using 15 mM H2O2 under solar light irradiation. Novelty Statement Hydrogen is produced from sucrose solution with low cost process requiring no special equipment, high pressure or temperature. First study that uses perovskite catalysts for the production of hydrogen from sucrose solution by photo-Fenton like oxidation GLFO is a promising photocatalyst for H-2 production by solar-Fenton like oxidation with the highest H-2 evaluation at 3388.34 mu mol/g(cat).Article Payne Cell Gravimetric Measurements in Polymer-Solvent Systems for Diffusion Coefficients and Isotherm Data(Wiley, 2021) Zielinski, John M.; Garcia, Armando R.; Alsoy Altınkaya, SacideThe discussion focuses on the application of a Payne cell to the measurement of diffusion and solubility coefficients in polymer/solvent systems. Payne cells have, thus far, been used exclusively to measure steady-state permeation rates of solvents. An analytical model has been developed to describe transient gravimetric sorption and desorption measurements performed with a Payne cell. The model has been validated by a complementary numerical simulation and has been applied to evaluate diffusion and solubility coefficients in two different toluene-silicone rubber systems. The data measured using the Payne cell are found to compare very well with diffusion coefficient and isotherm data measured by traditional gravimetric sorption experiments.Conference Object Investigation of Antimicrobial Activity To Determine Mic Value of Cinnamon Bark Oil Against Helicobacter Pylori(Wiley, 2014) Güneş, Seda; Becerikli, T.; Tıhmınlıoğlu, Funda; Yılmaz, Özlem[No abstract available]Conference Object In Vitro Evaluation of Bioactive Chitosan Microspheres for Eradicating Helicobacter Pylori Biofilm(Wiley, 2016) Güneş, Seda; Arslan, Nur; Demiray Gürbüz, Ebru; Tıhmınlıoğlu, Funda; Yılmaz, ÖzlemCertain H. pylori strains can form biofilm both inside and outside human host to protect itself under environmental stress. Biofilm contributes to development of antimicrobial resistance by some kind of mechanisms like providing a barrier for diffusion and allowing resistance gene expression.Conference Object Determination of Biofilm Formation by Helicobacter Pylori(Wiley, 2016) Arslan, Nur; Güneş, Seda; Demiray Gürbüz, Ebru; Tıhmınlıoğlu, Funda; Yılmaz, ÖzlemBackground : Certain H. pylori strains form biofilm in laboratory experiments and also on the surface of gastric mucosa, suggesting possible reason for eradication failure by increasing resistance to antimicrobial agents and transmission. Aim : To examine the mature biofilm formation by H. pylori NCTC11637 standard strain in different incubation periods for H. pylori biofilm characterization.Book Part Heterogeneous Catalysis From the Perspective of Surface Science(Wiley, 2017) Cihanoğlu, Aydın; Hernan Quinones-Murillo, Diego; Payer, Gizem[No abstract available]