WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7150
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Article Citation - WoS: 2Citation - Scopus: 2Fabrication of Bioactive Helix Aspersa Extract-Loaded Chitosan-Based Bilayer Wound Dressings for Skin Tissue Regeneration(Amer Chemical Soc, 2024) Perpelek, Merve; Tıhmınlıoğlu, Funda; Tamburaci, Sedef; Karakasli, Ahmet; Tihminlioglu, FundaIn recent years, there has been a notable shift toward exploring plant and animal extracts for the fabrication of tissue engineering structures that seamlessly integrate with the human body, providing both biological compatibility and physical reinforcement. In this particular investigation, we synthesized bilayer wound dressings by incorporating snail (Helix aspersa) secretions, comprising mucus and slime, into chitosan matrices via lyophilization and electrospinning methodologies. A nanofiber layer was integrated on top of the porous structure to mimic the epidermal layer for keratinocyte activity as well as acting as an antibacterial barrier against possible infection, whereas a porous structure was designed to mimic the dermal microenvironment for fibroblast activity. Comprehensive assessments encompassing physical characterization, antimicrobial efficacy, in vitro bioactivity, and wound healing potential were conducted on these bilayer dressings. Our findings revealed that the mucus and slime extract loading significantly altered the morphology in terms of nanofiber diameter and average pore size. Snail extracts loaded on a nanofiber layer of bilayer dressings showed slight antimicrobial activity against Staphylococcus epidermidis and Escherichia coli. An in vitro release study of slime extract loaded in the nanofiber layer indicated that both groups 1 and 2 showed a burst release up to 6 h, and a sustained release was observed up to 96 h for group 1, whereas slime extract release from group 2 continued up to 72 h. In vitro bioactivity assays unveiled the favorable impact of mucus and slime extracts on NIH/3T3 fibroblast and HS2 keratinocyte cell attachment, proliferation, and glycosaminoglycan synthesis. Furthermore, our investigations utilizing the in vitro scratch assay showcased the proliferative and migratory effects of mucus and slime extracts on skin cells. Collectively, our results underscore the promising prospects of bioactive snail secretion-loaded chitosan constructs for facilitating skin regeneration and advancing wound healing therapies.Article Citation - WoS: 1Citation - Scopus: 1Completeness of Energy Eigenfunctions for the Reflectionless Potential in Quantum Mechanics(Aip Publishing, 2024) Erman, Fatih; Turgut, O. TeomanThere are a few exactly solvable potentials in quantum mechanics for which the completeness relation of the energy eigenstates can be explicitly verified. In this article, we give an elementary proof that the set of bound (discrete) states together with the scattering (continuum) states of the reflectionless potential form a complete set. We also review a direct and elegant derivation of the energy eigenstates with proper normalization by introducing an analog of the creation and annihilation operators of the harmonic oscillator problem. We further show that, in the case of a single bound state, the corresponding wave function can be found from the knowledge of continuum eigenstates of the system. Finally, completeness is shown by using the even/odd parity eigenstates of the Hamiltonian, which provides another explicit demonstration of a fundamental property of quantum mechanical Hamiltonians.Article Citation - WoS: 3Citation - Scopus: 3Two Decades of Research on Roma in Türkiye: Socioeconomic Exclusion, Identity, and State Policies(Liverpool Univ Press, 2024) Celik, Faika; Uştuk, Ozan; Ustuk, OzanThe scholarly investigation of Roma communities in Turkiye has intensified since the 2000s, largely driven by Turkiye's EU accession candidacy and subsequent adaptation process. This alignment, along with internal developments, prompted governments to prioritize Roma issues, implement projects, and issue action plans. The Roma Civil Society Movement in the 1990s further highlighted Roma challenges, resulting in a diverse body of literature. This study critically examines academic literature to map prevailing trends and thematic foci. Key areas of scholarly engagement include the various dimensions of socio-economic exclusion faced by Roma in education, employment, housing, and health. Additionally, scholars analyze how Roma negotiate and resist pejorative representations, construct their identities, and organize to address contemporary challenges. State policies affecting Roma, from past to present, also receive considerable attention. By critically engaging with this scholarship, the present study highlights significant progress and ongoing challenges in Romani Studies in Turkiye, offering insights into future research directions.Article Machinability Investigation on Cnc Milling of Recycled Short Carbon Fiber Reinforced Magnesium Matrix Composites(Iop Publishing Ltd, 2024) Atasoy, Sahin; Kandemir, SinanThis study investigates the machinability of magnesium matrix composites reinforced with short carbon fibers, which represent novel materials in the field. AZ91 alloy and its composites containing 2.5 and 5 wt% recycled carbon fiber (rCF) reinforcements were used as workpieces. Face milling was conducted using uncoated carbide cutting tools under dry cutting conditions with varied cutting speeds (480-560-640 m min(-1)) and feed rates (0.65-0.8-0.95 mm min(-1)). The experimental design was based on the Taguchi L-9 (3(3)) orthogonal array. Analysis included cutting forces, surface roughness, wear on cutting inserts, and chip morphology to assess machinability. Taguchi, analysis of variance, and regression methods were employed to analyze cutting force and surface roughness results. Findings indicated satisfactory machinability for AZ91 alloy and comparatively poorer performance for the 5 wt% rCF reinforced composite, with increased reinforcement content correlating with higher cutting force and surface roughness. SEM and EDX analyses revealed significant built-up layer formation on cutting inserts, with predominantly spiral-shaped continuous chips observed in the experiments. Overall, the study affirmed the machinability of the composites and identified suitable cutting parameters for further investigations.Article Citation - WoS: 7Citation - Scopus: 7Bond-Based Peridynamic Fatigue Analysis of Ductile Materials With Neuber's Plasticity Correction(Springer, 2024) Altay, Ugur; Dorduncu, Mehmet; Kadioglu, Suat; Madenci, ErdoganThis study introduces an approach for performing bond-based (BB) peridynamic (PD) fatigue analysis of ductile materials. Existing BB PD fatigue models do not account for the effect of plastic deformation. The current approach addresses this by incorporating Neuber's plasticity correction concept into the fatigue model. Neuber's correction adjusts the stress and strain predictions of the PD elastic solution to account for local plastic deformation around crack tips. The PD fatigue simulations demonstrate the effectiveness of this method and improvements in fatigue life predictions by considering local plasticity effects. The numerical results first examine the response of a ductile plate without a crack under quasi-static monotonic loading. Subsequently, specimens exhibiting Mode I and mixed-mode crack propagation paths due to cyclic loading are analyzed. The PD predictions accurately capture the test data. Additionally, the model specifically investigates the effect of a stop hole on fatigue life.Article Citation - WoS: 4Citation - Scopus: 5Diffusion-Based Data Augmentation Methodology for Improved Performance in Ocular Disease Diagnosis Using Retinography Images(Springer Heidelberg, 2024) Aktas, Burak; Ates, Doga Deniz; Duzyel, Okan; Gumus, AbdurrahmanDeep learning models, integral components of contemporary technological landscapes, exhibit enhanced learning capabilities with larger datasets. Traditional data augmentation techniques, while effective in generating new data, have limitations, especially in fields like ocular disease diagnosis. In response, alternative augmentation approaches, including the utilization of generative AI, have emerged. In our study, we employed a diffusion-based model (Stable Diffusion) to synthesize data by faithfully recreating crucial vascular structures in the retina, vital for detecting eye diseases by using the Ocular Disease Intelligent Recognition dataset. Our goal was to augment retinography images for ocular disease diagnosis using diffusion-based models, optimizing the outputs of the fine-tuned Stable Diffusion model, and ensuring the generated data closely resembles real-world scenarios. This strategic approach resulted in improved performance in classification models and augmentation outperformed traditional methods, exhibiting high precision rates ranging from 85% to 76.2% and recall values of 86%, and 75% for 5 classes. Beyond performance enhancement, we demonstrated that the inclusion of synthetic data, coupled with data reduction using the t-SNE method, effectively addressed dataset imbalance. As a result of synthetic data addition, notable increases of 3.4% in the precision metric and 12.8% in the recall metric were observed in the 7-class case. Strategically synthesizing data addressed underrepresented classes, creating a balanced dataset for comprehensive model learning. Surpassing performance improvements, this approach underscores synthetic data's ability to overcome the limitations of traditional methods, particularly in sensitive medical domains like ocular disease diagnosis, ensuring accurate classification. The codes of the study will be shared on GitHub in a way that benefits everyone interested: https://github.com/miralab-ai/generative-data-augmentation.Article Citation - WoS: 2Citation - Scopus: 2Exploring the Use of Water-Extracted Flaxseed Hydrocolloids in Three-Dimensional Cell Culture(Mary Ann Liebert, inc, 2024) Yildirim-Semerci, Ozum; Bilginer-Kartal, Rumeysa; Arslan-Yildiz, AhuPlant-derived hydrocolloids offer promising prospects in biomedical applications. Among these, Flaxseed hydrocolloid (FSH) can form a soft, elastic, and biocompatible hydrocolloid with tunable viscosity and superior swelling capacity, making it an attractive scaffold. This study introduces a green extraction method for FSH, employing a single-step aqueous extraction process and fabrication of FSH scaffold. Despite growing interest, the pristine form of FSH has not been investigated for sustainable long-term three-dimensional (3D) cell culture. Here, FSH scaffolds were thoroughly characterized for their morphological, chemical, mechanical, and biological properties. 3D cell culture experiments were conducted using NIH-3T3 mouse fibroblast cells, and cell viability was assessed using live/dead and Alamar Blue assays. High cell viability was sustained for long term compared with 2D cell culture. Cell adhesion and 3D cellular morphology on FSH scaffold for 30 days were monitored by scanning electron microscopy analysis. Also, collagen type-I and F-actin expressions were analyzed by immunostaining after 30 days of culture, resulting in 5- and 4-fold increments of fluorescence intensity, respectively. Results indicate sustained cell viability in the long term and favorable cell-material interaction, demonstrating the potential of FSH as a scaffold. This study emphasizes the importance of the green extraction approach, improving the biocompatibility and functionality of FSH tissue engineering applications. Impact Statement Flaxseed hydrocolloid (FSH) is a promising scaffold for biomedical applications due to its biocompatibility and tunable properties. This study introduces a green extraction method for FSH and evaluates its use in 3D cell culture with NIH-3T3 mouse fibroblast cells. The findings indicate high cell viability and enhanced cell-material interactions over 30 days, highlighting the potential of FSH for tissue engineering.Article Citation - WoS: 1Citation - Scopus: 1Chemical Composition Optimization and Isothermal Transformation of Δ-Transformation Plasticity Steel for the Third-Generation Advanced High-Strength Steel Grade(Wiley-v C H verlag Gmbh, 2024) Okur, Onur; Davut, Kemal; Palumbo, Gianfranco; Nalcaci, Burak; Guglielmi, Pasquale; Yalcin, Mustafa Alp; Erdogan, MehmetA new low-manganese transformation-induced plasticity steel is designed with optimized nickel content to achieve superior strength and ductility while minimizing the use of expensive nickel. The steel is optimized using JMatPro software, then cast, and hot rolled. To assess the effect of intercritical annealing on austenite (martensite at room temperature) volume fraction and carbon content, hot-rolled steel samples quenched from different annealing temperatures (680-1100 degrees C) are used. Additionally, hot-rolled steel coupons are intercritically annealed at about 50% austenite formation temperature (740 degrees C) and then subjected to isothermal treatments at 300-425 degrees C for varying times (10-90 min). After optimizing these treatments to maximize retained austenite (RA), tensile specimens are heat-treated first at 740 degrees C and then isothermally at 325 degrees C. Thermodynamic calculations suggest that aluminum combined with silicon may lead to the delta ferrite formation, and even minimal nickel content can stabilize a considerable amount of austenite. In the experimental studies, it is shown that lower-temperature bainitic holding enhances austenite stability by enriching the carbon content. Optimized two-stage heat treatments yield up to 25.8% RA, with a tensile strength of 867.2 MPa and elongation of 40.6%, achieving a strength-elongation product of 35.2 GPax%, surpassing the third-generation advanced high-strength steel grades minimum requirement of 30 GPax%.Article Citation - WoS: 4Citation - Scopus: 4Vo<sub>2</Sub>-based Dynamic Coding Metamaterials for Terahertz Wavefront Engineering(Springer, 2025) Akyurek, Bora; Noori, Aileen; Demirhan, Yasemin; Ozyuzer, Lutfi; Guven, Kaan; Altan, Hakan; Aygun, GulnurDigital coding metasurfaces (DCMS) offer a promising alternative to conventional metasurface designs for achieving common functionalities by controlling the phase of reflected or transmitted electromagnetic waves. Their simple unit cell designs allow for scalability across the THz spectrum and facilitate large-area fabrication. The true potential of DCMS lies in dynamical coding, which enables real-time reconfigurability through a tuning and/or switching mechanism. In this study, metasurfaces that achieve 1-bit dynamic coding of unit cells via thermally induced metal-insulator transition of VO2 layers are designed and fabricated. We investigate experimentally the beam splitting functionality at certain frequencies in the 0.50-0.75 THz range reflected from the stripe- and checkerboard patterned metasurface samples, and demonstrate the switching of this functionality under thermal illumination.Article Citation - WoS: 5Citation - Scopus: 5Multiorgan-On for Cancer Drug Pharmacokinetics-Pharmacodynamics (pk-Pd) Modeling and Simulations(Springer/plenum Publishers, 2025) Mohammed, Abdurehman Eshete; Kurucaovali, Filiz; Okvur, Devrim PesenCancer is one of the most common and fatal diseases worldwide and kills millions of people every year. Cancer drug resistance, lack of efficacy, and safety are significant problems in cancer patients. A multiorgan-on-a-chip (MOC) device consisting of breast and liver compartments was designed with AutoCAD software. The MOC molds were printed by a Formlabs Form 2 3D printer. MDA-MB-231, HepG2, and MCF-10 A cells were used for the MOC experiments. The cell lines were cultured at 37 degrees C with 5% CO2, and cell viability was assessed via Alamar blue dye to generate pharmacodynamics (PD) data. Drug concentrations from the cell culture media were analyzed via Agilent 1260 Infinity II HPLC with a Waters Symmetry C18 column and used to generate pharmacokinetics (PK) data. The PK and PD data were modeled and simulated by Monolix and Simulix software, respectively. The safety and efficacy of drug dosing regimens were compared, and the best dosing regimens were selected. This research designed and fabricated a unique MOC consisting of liver and breast compartments that overcomes the need for sealing or assembling. It was used for PK-PD modeling and simulations, and its functionality was proven experimentally. The new MOC will be helpful in preclinical trials to evaluate the efficacy and safety of drugs.