TR Dizin İndeksli Yayınlar / TR Dizin Indexed Publications Collection
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Article Citation - WoS: 3Citation - Scopus: 4Photocatalytic Degradation of Aquatic Organic Pollutants With Zn- and Zr-Based Metalorganic Frameworks: Zif-8 and Uio-66(TÜBİTAK - Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, 2022) Çalık, Fatma Defne; Erdoğan, Bilgesu; Yılmaz, Esra; Saygı, Gizem; Çakıcıoğlu-Özkan, FehimeWater treatment has been an essential issue with the increasing population over 40 years. Researchers center on the major organic pollutants, such as dyes, pesticides, and pharmaceutical products. Photocatalytic degradation is one of the promising methods for aquatic organic pollutant treatment. Over the years, scientists have been working on developments for photocatalysts to enhance their pollutant degradation performances. From the reviewed studies, it is seen that properties like surface area, chemical, mechanical, and thermal stability, and uniform distribution of active sites are crucial, and an increase in these properties provides better degradation efficiency. In this sense, metal-organic frameworks as photocatalysts can be considered more advantageous. This study focuses on the organic aquatic pollutant degradation studies by using well-known MOFs like ZIF-8 and UiO-66 photocatalysts. Mainly the organic dye (RhB, MB, MO, etc.) degradation efficiencies of ZIF-8 and UiO-66 have been achieved to 100%. Recently, the degradation capacities of various pharmaceuticals such as diazinon, acetaminophen, levofloxacin, and sulfamethoxazole have also been investigated. According to the reviewed studies, ZIF-8 and UiO-66 can be considered remarkable photocatalysts for the degradation of organic pollutants.Article Citation - WoS: 4Citation - Scopus: 5Co2 Absorption Into Primary and Secondary Amine Aqueous Solutions With and Without Copper Ions in a Bubble Column(TÜBİTAK - Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, 2022) Yousefzadeh, Hamed; Güler, Cansu; Erkey, Can; Uzunlar, ErdalChemical absorption of CO2 into aqueous amine solutions using a nonstirred bubble column was experimentally investigated. The performance of CO2 absorption of four different primary and secondary amines including monoethanolamine (MEA), piperazine (PZ), 2-piperidineethanol (2PE), and homopiperazine (HPZ) were compared. The effects of initial concentration of amine, the inlet mole fraction of CO2, and solution temperature on the rate of CO2 absorption and CO2 loading (mol CO2/mol amine) were studied in the range of 0.02–1 M, 0.10–0.15, and 25–40 °C, respectively. The effect of the presence of copper ions in the amine solution on CO2 loading was also studied. By comparison of the breakthrough curves of the amines at different operational conditions, it was revealed that the shortest and longest time for the appearance of the breakthrough point was observed for MEA and HPZ solutions, respectively. CO2 loading of MEA, 2PE, PZ, and HPZ aqueous solutions at 25 °C, 0.2 M of initial concentration of amine, and 0.15 of inlet mole fraction of CO2 were 1.06, 1.14, 1.13, and 1.18 mol CO2/mol amine, respectively. By decreasing the inlet mole fraction of CO2 from 0.15 to 0.10, CO2 loading slightly decreased. As the initial concentration of amine and temperature decreased, CO2 loading increased. Also, the presence of copper ions in the absorbent solution resulted in a decrease in the CO2 loading of MEA and HPZ aqueous solutions. In case of PZ and 2PE amines, adding copper ions led to precipitation even at low copper ion concentrations.Article Citation - WoS: 1Citation - Scopus: 1Selective Catalytic Hydrogenation of Cellulose Into Sorbitol With Ru-Based Catalysts(TÜBİTAK, 2022) Orak, Ceren; Sapmaz, Aycan; Yüksel, AslıSorbitol is one of the platform chemicals and can be produced from various renewable and sustainable sources via different processes. Hydrothermal liquefaction is an effective and promising approach to produce sorbitol, since the subcritical reaction media and appropriate catalysts provide a selective production of platform chemicals. In this study, sorbitol was produced from different renewable sources (cellulose and glucose) in the presence of Ru-based catalysts (Ru/SiO2, Ru/AC, Ru/SBA-15, and Ru/SBA-15-SO3) under subcritical conditions. The highest cellulose conversion was achieved as 90% in the presence of Ru/SBA-15-SO3 for 1 h of reaction duration. The highest sorbitol yield (%) by hydrothermal liquefaction of cellulose was obtained as 6.2% by using Ru/AC for 1 h of reaction duration. A total of 99.9% of glucose conversion was achieved in the presence of all catalysts. The highest sorbitol yield (%) by hydrothermal liquefaction of glucose was found as 3.8% for 1 h of reaction duration. Owing to the results of GC-MS analysis, the intermediate products were identified, and, thus, a reaction pathway was proposed.Article Citation - WoS: 1Citation - Scopus: 1Potansiyel Doksorubisin Taşıyıcı Sistemi Olarak Peg-endozom Parçalayıcı Peptit Konjugatının Değerlendirilmesi(Gazi Üniversitesi, 2020) Şen, Selin; Top, AybenIn this study, it was aimed to develop a doxorubicin (DOX) carrier system based on a PEGylated TAT-derived cell penetrating peptide (G(2)RQR(3)QR(3)G(2)S) and to investigate drug release, self-assembly and stability properties of the carrier system. In the preparation of the drug delivery system, denoted as mPEG-peptide-oxime-DOX, methoxypolyethylene glycol (mPEG) with M-n=1900 Da was used. DOX was attached to the mPEG-peptide carrier system via acid cleavable oxime bond. Control drug delivery system, lack of the peptide (mPEG-oxime-DOX) was also synthesized to assess the effect of the peptide on the physicochemical and DOX release properties of the carrier system. mPEG-oxime-DOX exhibited a pH programmed DOX release with respective % DOX release values of similar to 68% and similar to 28% at pH 5.0 and at pH 7.4 at the end of 54 h. For the mPEG-peptide-oxime-DOX, on the other hand, quite low DOX release (similar to 10-15 %) was observed for both pH values suggesting possible interactions between DOX and the peptide. Initial median size value (D50) of the mPEG-oxime-DOX was measured as similar to 24 nm, independent of pH. However, for the mPEG-peptide-oxime-DOX, quite lower D50 values (similar to 3 nm and similar to 6 nm at pH 5.0 and pH 7.4, respectively) were obtained due to the repulsions between the arginines in the peptide sequence. Sizes of both drug delivery systems, tended to increase upon incubation at physiological conditions for 1 day suggesting that longer PEG chains should be used to enhance the stability of the mPEG-peptide-oxime-DOX and mPEG-oximeDOX systems.Article Citation - WoS: 11Citation - Scopus: 13Effect of Cnt Incorporation on Pan/Ppy Nanofibers Synthesized by Electrospinning Method(TÜBİTAK, 2020) İnce Yardımcı, Atike; Tanoğlu, Metin; Yılmaz, Selahattin; Selamet, YusufIn this study, carbon nanotubes (CNTs) added polyacrylonitrile/polypyrrole (PAN/PPy) electrospun nanofibers were produced. Average diameters of the nanofibers were measured as 268 and 153 nm for 10 and 25 wt% of PPy contents, respectively. A relatively higher strain to failure values (23.3%) were observed for the low PPy content. When as-grown CNTs (1 and 4 wt%) were added into the PAN/PPy blends, disordered nanofibers were observed to form within the microstructure. To improve the interfacial properties of CNTs/PAN/PPy composites, CNTs were functionalized with H2SO4/HNO3/HCl solution. The functionalized CNTs were well dispersed within the nanofibers and aligned along the direction of nanofibers. Therefore, beads formation on nanofibers decreased. The impedance of the nanofibers was found to decrease with the PPy content and CNT addition. These nanofibers had a great potential to be used as an electrochemical actuator or a tissue engineering scaffold.Article Citation - WoS: 2Tekstil Endüstrisinde Bütünleşik Membran Sistemi ile Su Geri Kazanımı ve Hibrit İleri Oksidasyon/membran Filtrasyonu ile Konsantrelerin Arıtımı ve Yönetimi(Pamukkale Üniversitesi, 2018) Kırıl Mert, Berna; Doğan, Esra C.; Balcı, Esin; Tilki, Yasemin M.; Aksu, Şeyda; Gören, Ayşegül Yağmur; Aydıner, CoşkunBu çalışmada, etkinliği bilinen UF/NFsıkı/TO membran kombinasyonu ile tekstil atıksularının arıtımının yanısıra %75-80 su geri kazanım oranı dahilinde oluşan membran konsantrelerinin, bütünleşik ileri oksidasyon prosesi (Fenton ve foto-Fenton (UVA-365–UVC-254))/batık UF sistemi ile daha önce belirlenen optimum işletme şartlarında oksidasyona tabi tutularak yönetimi gerçekleştirilmiştir. Yapılan deneysel çalışmalar sonucunda, UF/NFsıkı/TO membran konfigürasyonu ile arıtımı sonucunda oluşan konsantre akımlarının Fenton, foto-Fenton (UVA-365) ve (UVC-254) prosesleri/batık UF sistemi ile oksidasyonu sonrası, ardışık işletimli foto-Fenton (UVC-254)/UH050 hibrit prosesinin 9.88 H2O2/TOK ve 7.27 H 2 O 2 /Fe 2 + oranlarında, 44 L/m 2 .sa’lik süzüntü akısında %86 KOİ giderimi ile KOİ değeri 167 mg/L’ye ve %74.2 TOK giderimi ile TOK değeri 104 mg/L’ye kadar düşürülerek en iyi performans gösteren yenilikçi proses olduğu sonucuna varılmıştır. Oluşan membran konsantrelerin oksidasyonu sonrasında kalan konsantrenin tehlikelilik özellikleri, bertaraf/geri kazanım yöntemleri ve yeniden kullanım alternatifleri değerlendirildiğinde tekstil endüstrisi atıksularının foto-Fenton (UVA-365) ile arıtımı sonucunda oluşan konsantre haricinde diğer tüm konsantrelerin tehlikeli özelliğine sahip olduğu görülmüştür. Konsantrelerin bertaraf/geri kazanım yöntemleri ayrıntılı olarak değerlendirildiğinde, gerekli düzenlemeler (nem içeriği, susuzlaştırma, uygun debi ve/veya karışım oranları) yapıldığı takdirde bu konsantrelerin düzenli depolama, yakma ve merkezi atıksu arıtma sistemine verme gibi seçeneklerle bertaraf edilebileceği sonucuna varılmıştır.Article Citation - WoS: 10Citation - Scopus: 9Bi̇yomalzemelerden İ̇zole Edi̇len Staphylococcus Epidermidis Suşlarinin Yüzey Özelli̇kleri̇ni̇n Beli̇rlenmesi̇(Ankara Mikrobiyoloji Derneği, 2010) Sudağıdan, Mert; Erdem, İlker; Çavuşoğlu, Cengiz; Çiftçioğlu, MuhsinThe surface properties of bacteria play an important role on adhesion to the biomaterial surface. In this study, the surface properties of Staphylococcus epidermidis strains isolated from clinically used polymeric biomaterial surfaces were investigated on the basis of zeta potential, hydrophobicity and surface topography. A total of 10 S.epidermidis strains isolated from intravenous catheters (n= 5), endotracheal tubes (n= 3) and central venous catheters (n= 2) which were used in the patients of pulmonary Intensive Care Unit, Ege University Medical Faculty Hospital, were included to the study. Seven of those isolates were biofilm producers, inhabiting biofilm genes, 2 were non-biofilm producers, however, inhabiting biofilm genes, and 1 was non-biofilm producer, inhabiting no biofilm genes. Zeta potential analysis have been performed in 3 different buffers (phosphate-buffered saline, 1 mM potassium chloride and 1 mM potassium phosphate buffer) and at different pH values (pH 4.1-8.2), in order to simulate in vivo environment of the biomaterials. Hydrophobicities of the strains were examined by bacterial adhesion to hydrocarbon (BATH) test and the surface topography of biofilms and slime layers were visualized by atomic force microscopy (AFM) and scanning electron microscopy (SEM) methods. It was found that all strains have negative zeta potential values (surface charge) in all buffers and pH values. In hydrophobicity analysis, the highest value (86%) was determined for non-biofilm forming S.epidermidis strain YT-169b (endotracheal tube isolate) and the lowest hydrophobicity (2.5%) was determined for biofilm forming S.epidermidis strain YT-212 (central venous catheter isolate). Biofilm and slime layers of the strains were imaginated by AFM and SEM analysis in ?m scale. SEM analysis showed that bacteria highly adhered to rough surfaces on biomaterial surfaces and the produced slime layers covered the surface of bacteria. In conclusion, elucidating the surface properties of opportunistic pathogens in different physiologic buffers will give important clues for the production of non-adhesive materials and antibacterial surfaces for those bacteria. It was also estimated that designing the surface of the biomaterial to have negative surface charge in the body and to be as smooth as possible will hamper biofilm formation.Article Citation - WoS: 14Xenograft Tumor Volume Measurement in Nude Mice: Estimation of 3d Ultrasound Volume Measurements Based on Manual Caliper Measurements(Dokuz Eylül Üniversitesi, 2020) Barış, Mustafa; Serinan, Efe; Çalışır, Meryem; Şimşek, Kürşat; Aktaş, Safiye; Yılmaz, Osman; Seçil, Mustafa; Kılıç Özdemir, SevgiObjectives: Volume measurement of subcutaneous xenograft tumors in nude mice models is an important metric to assess tumor growth or response to therapy. Manual calipers are widely used for this purpose. But the measurements with manual calipers may be inaccurate. Contrarily, three-dimensional (3D) ultrasonographic measurements give reliable and accurate tumor volume calculation. We aim to; evaluate the accuracy of common four formulas given in the literature to estimate xenograft tumor volumes based on manual caliper measurements and offer a new coefficient for a better estimation of the tumor volumes. Patients and Methods: Detailed manual diameter measurements of xenograft tumors were in 14 nude mice performed using Vernier caliper. Tumor volumes were calculated using the suggested formulas in the literature based on manual measurements. 3D ultrasound volume measurements were performed on same xenograft tumors using high resolution Vevo 2100 imaging system. To propose a new coefficient; means of ratio between manual and ultrasound volume measurement values were used. Also, data set was divided into two subgroups as tumor volume under 800 mm3 and over 800 mm3. New coefficients for each subgroup were defined. Results: Only with prolate ellipsoid formula there was no statistically significant difference between volume measurements with two methods (p=0,24). Our proposed formula (0,45 L*W*H) could estimate tumor volumes as good as prolate ellipsoid formula. Coefficient 0,35 and 0,81 in the same formula were found efficient in the selected subgroups. Conclusion: Using one common coefficient/formula for tumor volume estimation in any tumor size can be inaccurate. Appropriate coefficient should be chosen according to the dataset worked with.Article Citation - WoS: 3Validation on of Local Thermal Equilibrium and Uniform Pressure Assumptions for an Isobaric Adsorption Process in an Adsorbent Bed(Türk Isı Bilimi ve Tekniği Derneği, 2016) Gediz İliş, Gamze; Mobedi, Moghtada; Ülkü, SemraBu çalışmanın amacı, adsorbent yatakta ısı ve kütle transferini analiz etmek için kullanılan yerel ısıl denge ve sabit basınç yaklaşımı varsayımların geçerliliğini araştırmaktır. İçerisinde silika jel partikülleri içeren bir yatak ile su kabı olan bir deney düzeneği tasarlanmış ve adsorpsiyon sürecinde yatağın içinde farklı yerlerde yerel sıcaklık ve basınç ölçülmüştür. Ayrıca, sabit basınç yaklaşımı ve yerel ısıl denge varsayımlara dayalı ısı ve kütle transferi denklemleri çözülmüştür. Sayısal sonuçlar, ilgili deneysel sonuçlarla karşılaştırılmış ve aralarında oldukça iyi bir uyum tespit edilmiştir. Gerçekleştirilen karşılaştırmaya dayanarak, incelenen yatak için iki önemli sonuç şu şekildedir: a) katı madde ve su buharı arasında yerel ısıl denge bulunmaktadır, b) bir yatak içinde parçacıklar arası kütle transferi direnci ihmal edilebilir düzeyde olup konsantrasyonunun ve sıcaklığın belirlenmesi için sabit basınç yaklaşımı geçerlidir. Ayrıca, bu çalışmada sunulan deneysel sonuçlar diğer araştırmacıların sayısal çalışmalarının geçerliliğini doğtulamak için değerli veriler sağlayacaktır.Article Citation - WoS: 5Citation - Scopus: 7Bleach-Containing Automatic Toilet-Bowl Cleaners as Sources of Vocs, Associated Indoor Air Concentrations and Carcinogenic Risk(Turkish National Committee for Air Pollution Research (TUNCAP), 2020) Ayrı, İlknur; Genişoğlu, Mesut; Gaygısız, Handan; Sofuoğlu, Aysun; Sofuoğlu, Sait CemilHousehold cleaning products are sources of volatile organic compounds (VOCs). Bleach containing products are a special case because reactions occur between chloride and their organic content such as surfactants, perfumes, etc., generating VOCs. This study aimed to determine concentration of 13 VOCs in bleach-containing automatic toilet cleaners, to estimate their indoor air concentrations and associated exposure and health risk levels. Experiments with products purchased from supermarkets were conducted in 20-mL headspace vials by placing 1 g of sample with and without water. Solid-phase micro extraction with a DVB/CAR/PDMS fiber assembly was used for adsorption of VOCs from the headspace, and analyzed using a GC-MS. The median carbon tetrachloride and chloroform concentrations of the studied products ranged from 5.03 × 10?3 to 2.37 × 10?2 ?g/g and 2.53 × 10?2 to 2.37 ?g/g, respectively. The modeled 95th percentile indoor air concentrations in a 1.6 m3 bathroom with no ventilation were estimated to be 1 and 20 ?g/m3 for carbon tetrachloride and chloroform, respectively. The 95th percentile carcinogenic risk associated even with the use of the highest content product, 3.72 × 10?7 and 8.62 × 10?7 for carbon tetrachloride and chloroform respectively, were below the acceptable risk. In conclusion, automatic toilet-bowl cleaners were found to be sources of VOCs, but their emission potentials are not high to cause considerable indoor air concentrations over their suggested product lifetime. In turn, carcinogenic risks associated with inhalation exposure are below the de Minimis risk level of 10?6. © 2020