TR Dizin İndeksli Yayınlar / TR Dizin Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7149
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Article Seismic Risk Prioritization of Stone Masonry Building Stock in Urla Peninsula Based on Rapid Assessment Techniques(Turkish Chamber of Civil Engineers, 2026) Karavin, Y.S.; Akdag, N.; Demir, U.This study aims to investigate seismic risk of stone masonry buildings in the Urla Peninsula, a region of historical and architectural significance within İzmir, Türkiye. A total of 100 stone masonry buildings were surveyed and documented with a focus on their architectural characteristics, including construction techniques, material types, structural configurations, and age. Data on the properties of all surveyed buildings are provided in an open-access database. Based on the survey, multiple rapid seismic performance assessment methods were applied to evaluate the vulnerability of these structures. These included: i) FEMA P-154 Rapid Visual Screening, ii) Provisions for the Seismic Risk Evaluation of Existing Buildings under Urban Renewal Law (RBTE-2019), iii) Seismic Vulnerability Index for Vernacular Architecture (SVIVA), and iv) the Masonry Quality Index (MQI). The comparative use of different methods is intended to investigate the relative influence of parameters shaping the seismic performance of the masonry building stock rather than to align their scores. The outcomes of this research are expected to contribute to the current risk mitigation efforts for stone masonry buildings in İzmir, thereby supporting regional seismic resilience planning. © 2026, Turkish Chamber of Civil Engineers. All rights reserved.Editorial A Thin Film Micro-Extraction Based Salivary Metabolomics and Chemometric Strategy for Rapid Lung Cancer Diagnosis(Galenos Publ House, 2025) Pelit, Levent; Basbinar, Yasemin; Goksel, Ozlem; Goksel, Tuncay; Erbas, İlknur; Pelit, Fusun; Ozdemir, DurmusINTRODUCTION: Lung cancer (LC) remains one of the leading causes of cancer-related mortality worldwide, largely due to the lack of reliable biomarkers for early detection.1 Despite advances in di-agnostic imaging and targeted therapies, the five-year survival rate remains low because most cases are diagnosed at advanced stages. Consequently, the development of sensitive, non-invasive, and cost-effective diagnostic approaches is a major clinical priority. Metabolomics, the comprehensive profiling of small-molecule metabolites, has emerged as a powerful tool for uncovering cancer-associated metabolic alterations, providing insights into tumor biology and facilitating the discovery of novel biomarkers for accurate diagnosis and disease monitoring. Among biological matrices, saliva is a promising diagnostic biofluid because it can be collected non-invasively, is simple to obtain, and reflects systemic and local metabolic changes. Recent studies have demonstrated its potential for detecting various cancers, including lung cancer, highlighting its value for biomarker-based early di-agnosis.2,3 In this study, a novel thin-film microextraction (TFME) technique integrated with liquid chromatography-tandem mass spectrometry (LC-MS/MS) is introduced for the rapid, selective, and reproducible extraction of salivary metabolites. The developed TFME approach offers high throughput, reduced solvent consumption, and enhanced analytical performance, enabling the identification and quantification of key metabolic biomarkers associated with lung cancer. The objective of this workflow is to advance saliva-based metabolomics toward clinical translation, offering a promising avenue for the early and non-invasive diagnosis of lung cancer. MATERIAL AND METHODS: Synthesis of SiO2 Nanoparticles and TFME blade Preparation: SiO2 nanoparticles were synthesized using the Stöber method, followed by post-coating with tetraethyl orthosilicate, centrifugation, wash-ing with ethanol, and drying. The nanoparticles were incorporated into a polyacrylonitrile (PAN) matrix and coated onto steel TFME blades via a controlled dip-coating process to ensure uniform film thick-ness. Participants and Sample Collection: Saliva samples were collected from 40 histopathologically con-firmed lung cancer patients and 38 healthy volunteers following an overnight fast and an oral rinse. Ethical approval and informed consent were obtained (Ege University Ethics Committee, protocol: 15-11.1/46). Saliva samples were centrifuged, diluted (1:2), and stored at -80 °C until analysis. TFME Sampling and Analysis: A 96-well plate system equipped with PAN/SiO2-coated TFME blades was used for metabolite extraction (Figure 1). Blades were immersed in diluted saliva samples and rotated at 850 rpm for 150 minutes to allow analyte adsorption, followed by desorption of analytes in 0.1% formic acid for 30 minutes. Desorbed solutions were spiked with 0.5 µg/mL ornidazole as an internal standard prior to LC-MS/MS analysis. RESULTS: The TFME method was optimized to detect 18 metabolites in pre-treatment saliva samples from lung cancer patients. Chromatographic evaluation demonstrated that the Inertsil 100 column, employing isocratic elution with ornidazole as the internal standard, provided optimal separation effi-ciency and reproducibility. Extraction parameters, including desorption solution type and pH, were optimized; desorption solution type 2 at pH 8-9 yielding the highest metabolite recovery. Analytical validation indicated robust linearity (R2: 0.9841-0.9975), sensitivity (limit of detection: 0.014-0.97 μg/mL; limit of quantification: 0.046-3.20 μg/mL), precision (%relative standard deviation <20%), and accuracy (85-125% for most metabolites). Pathway analysis revealed significant alterations in the me-tabolism of phenylalanine, purine, tyrosine, histidine, and methionine. The Heatmap visualization showed increased levels of proline, hypoxanthine, phenylalanine, and tyrosine in lung cancer pa-tients. receiver operating characteristic curve analysis highlighted these metabolites as potential bi-omarkers, with proline exhibiting the highest diagnostic performance [area under the curve (AUC): 0.946], followed by hypoxanthine (AUC: 0.933) and phenylalanine (AUC: 0.905) CONCLUSION: The findings of this study demonstrate that the TFME approach is a reliable and effi-cient platform for metabolomic profiling in lung cancer. Using pre-treatment saliva samples, the method achieved a sensitivity exceeding 90% for detecting newly diagnosed histopathologically con-firmed patients. Among the metabolites analyzed, proline, hypoxanthine, and phenylalanine showed strong diagnostic potential, consistent with the pathway analyses implicating purine and phenylala-nine metabolism. These results underscore the potential of salivary metabolomics as a non-invasive screening alternative in the absence of validated early lung cancer biomarkers. Additionally, TFME’s high-throughput capacity, cost-effectiveness, and environmental sustainability support its feasibility for routine clinical application.Article Citation - WoS: 2Citation - Scopus: 1Çelik Fiber Katkısının Farklı Boyuna Donatı Oranına Sahip Betonarme Döşemelerin Zımbalama Davranışı Üzerinde Etkileri(2019) Saatci, Selcuk; Yasayanlar, Suleyman; Yasayanlar, Yonca; Batarlar, BaturaySunulan çalışmada her iki yönde birbirine dik 0,004 (D1 serisi) ve 0,002 (D2 serisi) oranında boyuna donatıiçeren 2150x2150x150 mm boyutlarında iki grup betonarme döşeme, hacimce %0, %0,5, %1 ve %1,5oranında çelik fiber katkısı içeren beton karışımlarıyla dökülmüştür. Üretilen toplam sekiz döşeme ortanoktalarından statik yük altında test edilmişlerdir. Çelik fiber katkısı olmayan numunelerde yüksek boyunadonatı oranına sahip döşeme boyuna donatısında akma gerçekleşmeden gevrek bir şekilde zımbalamagöçmesi oluşurken düşük boyuna donatı oranına sahip döşeme zımbalama gerçekleşmeden önce çok dahasünek bir davranış göstermiştir. Çelik fiber katkısı her iki boyuna donatı oranında da iki kata varan oranlardazımbalama dayanımı artışlarına sebep olmuştur. Ancak D1 serisi döşemelerde çelik fiber katkısı maksimumyer değiştirmeleri önemli ölçüde arttırırken D2 serisinde maksimum yer değiştirmelerde önemli bir farkoluşmamış, bu döşemelerin yer değiştirmesi boyuna donatının akması tarafından kontrol edilmiştir. Çelikfiber katkısı oranının arttırılması D1 serisi döşemelerde dayanımın ve maksimum yer değiştirmelerinartmasına sebep olurken, D2 serisi döşemelerde %1'in üstü çelik fiber katkı oranları davranışta önemli birfark oluşturmamıştır. Yapılan deneyler Kritik Kesme Çatlağı Teorisi kullanılarak analitik olarakmodellenmiş ve bu tip modelleme ile ilgili bazı iyileştirmeler önerilmiştir.Article Experimental Study of Evolution of Breach Resulting From Piping at Upper Part of Earth-Fill Dam(Turkish Chamber Civil Engineers, 2025) Guney, Mehmet Sukru; Tayfur, Gokmen; Bor, Asli; Okan, Merve; Dumlu, Emre; Aklık, PelinPiping and overtopping are the most important causes of earth-fill dam failure. Such dams may erode under seepage, causing a reduction in the structural strength. The aim of this study was to investigate the temporal evolution of the breach and flow rate from the breach resulting from the piping in earth-fill dams. The experiments were carried out at Hydraulics Laboratory of Civil Engineering Department of İzmir University of Economics. The dam was constructed by using a mixture consisting of 85 % sand and 15 % fine (low plasticity clay). In the first scenario a circular tunnel with a diameter of 2 cm was created along the centreline at 6 cm below the dam crest whereas in the second one it was located at the upper edge. Six cameras at different locations recorded the evolution of the progress of the breach formation. The pump flow rate was measured by magnetic flow meter, and the continuity equation was used to calculate the flow rate values from the breach. The time-varied values of the total breach areas were determined using the Gauss Area formula. The image processing method was also applied in the determination of the breach areas. The time-dependent changes of water depth in the channel were also recorded. The obtained experimental findings are presented and commented, together with the universal dimensionless curves. The failure of the dams occurred mainly because of the head cut erosion developed from downstream to upstream. When breaching started, the orifice flow was converted to open channel flow where breach bottom behaved like a broad crested weir. In the second scenario, the rigid lateral side considerably influenced the flow rate and the development of the breach. The peak flow rate corresponding to the first scenario was found approximately 2.3 times greater than that of the second one. The maximum values of all the breach parameters were reached earlier in the case of the seepage along the centerline. The ratios between the values corresponding to the first and the second scenarios were found as 3.25 and 1.75 for maximum breach areas at downstream and at upstream sides, respectively. These ratios were 2.44 and 1.37 for the average breach widths at downstream and upstream sides, respectively. A very good agreement was found between the area values obtained from Gauss area method and image processing technique, in both scenarios. This fact demonstrated that either of these two approaches can be used to determine the time-dependent breach areas. These experimental findings provide the opportunities for the calibration and validation of the numerical models used in the relevant numerical investigations. This study also offers guidance for the strategies concerning emergency action plans related to the failure of homogeneous earth-fill dams when the piping starts at upper part of the homogeneous earth-fill dams.Article Blank Frame and Intensity Variation Distortion Detection and Restoration Pipeline for Phase-Contrast Microscopy Time-Lapse Images(Aves, 2024) Ucar, Mahmut; Iheme, Leonardo O.; Onal, Sevgi; Pesen-Okvur, Devrim; Yalcin-Ozuysal, Ozden; Toreyin, Behcet U.; Unay, DevrimIn this study, we propose a preprocessing pipeline for the detection and correction of distorted frames in time-lapse images obtained from phase-contrast microscopy. The proposed pipeline employs the average intensities of frames as a foundational element for the analysis. In order to evaluate the degree of correction required for intensity variance, a normalization technique is applied to the difference between the average intensity of a specific frame and the median average intensity of all frames within the study. Our restoration method increases the histogram similarity between the distorted and non-distorted frames, preserves trans-passing pixels in regions of interest, and mitigates the development of additional distortions. The efficacy of the proposed method was evaluated using 15 395 time-lapse image frames from 27 experiments using our own dataset and 830 time-lapse images from four different experiments obtained from the cell tracking challenge. The results of the validation demonstrate a high degree of numerical and visual accuracy of the proposed pipeline.Article Vascularized Mini Cooling Channels To Achieve Temperature Uniformity: Battery Thermal Management and Electronic Cooling(MIM RESEARCH GROUP, 2023) Coşkun, Turgay; Çetkin, ErdalHere we propose to use of distinct vascularized plates to be used in the applications of battery thermal management and electronic cooling. The temperatures of battery cells increase during charge and discharge; and elevated temperature values in them accelerated degradation and even may trigger battery fire because of the thermal runaway. Therefore, thermal management system is a necessity for battery packs to increase the battery performance and diminish the risk factors in the electric vehicles. Generally, high amount of heat is released in the high capacity (>15 Ah) cells in short time interval under fast charge/discharge conditions; thus, thermal management of the battery system can be achieved with liquid cooling in that situation. A silicon heater system which represents the thermal behavior of a battery cell is manufactured based on the literature and it is used in experiments. Such a method has not proposed up to now in the literature, so the study may be creating a new experimental procedure for future studies without the risk of battery fire/degradation to uncover even extreme conditions experimentally. Electronic cooling is also in prime importance due to enhanced computing requirement of current systems, and vascularized plates can solve the hot spot problems occurring with decreased energy consumption. According to the results, the cooling capacity of the vascularized plates are calculated as 20W, and a battery cell can be kept within its optimal operating temperature range when the heat loads up to 30W. Also, the temperature uniformity along the surface of mimic of the battery is satisfied by vascularized plates.Article Characteristic Architectural Elements of Traditional Barbaros Houses With a Single-Living Space and Their Relationship With Daily Life(Istanbul University Press, 2023) Saribekiroǧlu, Ş.; Kul, F.N.Barbaros is a rural settlement in Urla, Izmir, Turkey. This study aims to understand the architectural elements of Barbaros houses with a single-living space, their spatial organization, relation with daily life, and the local terminology for them. Moreover, it is aimed to reveal possible similarities and dissimilarities between architectural elements of other singleliving space rural houses in different settlements in close geography. The site survey data was collected in 2016, 2017, and 2020. Fourteen houses were examined, all of which still preserve their original spatial characteristics and architectural elements. The plans and architectural elements of each of the 14 buildings were documented in sketches and photographs. The architectural elements of each house and their characteristics, including form, material, and location in space, were analyzed. The Barbaros case was compared with other rural settlements in Çeşme, Karaburun and Urla. Oral interviews were conducted with 13 people to reveal the relationship between architectural elements and daily life. © 2023 The Author(s).Article İzmir’de Bir Osmanlı Dönemi Konağının Tavan ve Duvar Resimlerinin Yapım Tekniği ve Malzeme Özellikleri(Gazi Üniversitesi, 2021) Şerifaki, Kerem; İpekoğlu, BaşakKültür varlıklarımızın en hassas bileşenlerinden olan duvar resimlerinin korunmasında, resimlerin özgün malzeme özellikleri ve yapım tekniğinin belirlenmesi önemli aşamalardan biridir. Bu çalışma kapsamında İzmir Bayraklı’da yer alan Yahya Hayati Paşa Konağı’nın duvar ve tavan resimlerinin yapım tekniği ve malzeme özellikleri 2010 yılında yapıya ağır hasar veren yangın öncesinde alınan örnekler üzerinde gerçekleştirilen analizler ile belirlenmiştir. Duvar resimlerinin sıva ve astar tabakalarının, boyayı oluşturan bağlayıcı malzeme ile pigmentlerin mikro-yapısal özellikleri, mineralojik ve kimyasal kompozisyonları; optik mikroskop, kızılötesi spektroskopisi, X ışınları kırınım cihazı (XRD) ve EDS üniteli taramalı elektron mikroskobu kullanılarak tespit edilmiştir. Çalışma, resimlerin kireç sıva üzerinde yer alan organik bağlayıcı ve çeşitli beyaz pigmentlerden oluşan hazırlık tabakaları üzerinde yağlı boya tekniği ile uygulandığını göstermiştir. Resimlerin yapımında bitkisel yağın rengini beyazlatmak amacıyla çinko oksit (ZnO), kurşun beyazı $(PbCO_3)$ ve baryum beyazı $(BaSO_4)$ kullanıldığı belirlenmiştir. Resimlerin yapımında kırmızı için vermiyon (HgS), mavi için ultramarin $(N_{a6-10}Al_6Si_6O_{24}S_{2-4})$, yeşil için zümrüt yeşili $(3Cu(AsO_2)_2.Cu(CH_3COO)_2)$ ve kahverengi için kırmızı okra $(Fe2O_3$, kil mineralleri) kullanıldığı tespit edilmiştir. Bu ana pigmentler dışında, dolgu malzemesi olarak kullanılan baryum beyazı (BaSO4) ve kurşun kırmızısı pigmentinin $(Pb_3O_4)$bozulma ürünlerinden biri olan anglezit (PbSO4) tespit edilmiştir. Çalışma, yanarak yok olmuş bir kültür varlığının süslemelerinin yapım tekniği ve malzeme özelliklerinin belgelenmesi ile yapının onarımı aşamasına veri oluşturacaktır.Article Citation - Scopus: 5Nano Zinc Borate as a Lubricant Additive(Turkish Chemical Society, 2018) Savrık, Sevdiye Atakul; Üstün, Fatma; Alp, Burcu; Balköse, DevrimLubricants consist of base oils and chemical additives such as dispersants, surfactants, oxidation inhibitors, and antiwear agents. Organic and inorganic boron-based additives increase wear resistance and decreases friction. Hexagonal boron nitride and metal borates are used for this purpose. Zinc borate is a synthetic hydrated metal borate. The production techniques of zinc borate generally include the reaction between zinc source materials (zinc oxide, zinc salts, zinc hydroxide) and the boron source materials (boric acid and borax). The nano zinc borate particles were prepared from zinc nitrate and borax in the present study by using low initial zinc and borate concentrations and low temperature to prevent particle growth. The templates span 60 and PEG 4000 were used to control the particle size. The particles were separated from mother liquor by centrifugation, washed with ethanol, dried and ground and used as additive to base oil. The particles have H2O and B(3)-O vibrations in their FTIR spectra. The empirical formula of the nanoparticles was approximately 3ZnO.2B2O3.4H2O from EDX and TGA analysis. X-ray diffraction diagram indicated the particles were in amorphous state. When the nanoparticles were added to light neutral oil the wear scar diameter and friction coefficient was lowered 50% and 20% respectively.