Chemical Engineering / Kimya Mühendisliği
Permanent URI for this collectionhttps://hdl.handle.net/11147/14
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Article Citation - WoS: 13Citation - Scopus: 18Stimuli Responsive Polymer-Based Strategies for Polynucleotide Delivery(Cambridge University Press, 2017) Uz, Metin; Alsoy Altınkaya, Sacide; Mallapragada, Surya K.In recent years, stimuli responsive polymer based gene delivery vehicle design for cancer treatment and treatment of other genetic disorders has received extensive attention. Early studies focusing on DNA delivery have been facilitated by functional polymers and this area has seen further growth spurred by recent gene silencing strategies developed for small RNA [i.e., small interfering RNA (siRNA) or micro RNA (miRNA)] delivery. DNA and small RNAs possess analogous properties; however, their explicit differences define the specific challenges associated with the delivery route and the design of functional materials to overcome distinct challenges. Apart from classical gene delivery, the recent advances in genome editing have revealed the necessity of new delivery devices for genome editing tools. A system involving CRISPR (clustered, regularly interspaced, short palindromic repeats) and an endonuclease CRISPR-associated protein 9 (Cas9) coupled with a short, single-guide RNA (sgRNA) has emerged as a promising tool for genome editing along with functional delivery systems. For all these nucleic acid based treatments, the internal or external physiochemical changes in the biological tissue/cells play a major role in the design of stimuli responsive delivery materials for both in vitro and in vivo applications. This review emphasizes the recent advances in the use of pH, temperature, and redox potential-responsive polymers overcoming hurdles for delivery of gene and gene editing tools for both in vitro and in vivo applications. Specifically the chapter focuses on recently proposed delivery strategies, types of delivery systems, and polymer synthesis/modification methods. The recent advances in CRISPR/Cas9-sgRNA technology and delivery are also described in a separate section. The review ends with current clinical trials, concluding remarks, and future perspectives.Article Citation - WoS: 5Citation - Scopus: 5Methylene Blue Adsorption From Aqueous Solutions To Flexible Poly(vinyl Chloride) Silica Composites(John Wiley and Sons Inc., 2015) Yetgin, Senem; Ulutan, Sevgi; Balköse, DevrimMethylene blue (MB) adsorption studies were performed with poly(vinyl chloride)-(dioctyl phthalate)-silica composites, which were obtained by using plastisol-plastigel technology. The films were flexible, having elastic modulus of 1.0-1.5 GPa. Diminishing MB concentration in the aqueous phase was followed as the adsorption process advanced by using visible spectroscopy. Contributions of the individual components of the composites to adsorption were also investigated. Although the MB adsorption capacity was extensively high for silica, it was moderate for the composite, most likely owing to the occlusion of pores of silica by plasticizer to some extent. The improvement of MB adsorption capacity of the composites as the silica ratio increased was explicitly deduced from the optical microscopy photographs. The diffusion coefficients of MB through the composites were 5 × 10-13, 6 × 10-13, and 3 × 10-13 m2 s-1 with regression coefficients of 0.73, 0.89, and 0.88 for 0, 2, and 16% silica-containing composites, respectively. Because of the slow diffusion of MB in poly(vinyl chloride)-silica composites, using them as dynamic column adsorbent was not practical. However, these versatile plastics can be used as plastic labels, colored clothing, leather substitutes, antimicrobial medical devices, and laser printable surfaces.Article Citation - WoS: 24Citation - Scopus: 24Synthesis of Heterotelechelic Polymers With Affinity To Glutathione-S and Biotin-Tagged Proteins by Raft Polymerization and Thiol-Ene Reactions(Royal Society of Chemistry, 2011) Huang, Xin; Boyer, Cyrille; Davis, Thomas P.; Bulmuş, Volgaα-Glutathione (GSH), ω-biotin functionalized poly(N-isopropylacrylamide) (PNIPAAm) was synthesized via reversible addition-fragmentation chain transfer (RAFT) polymerization using a new R-group allyl functionalized trithiocarbonate chain transfer agent (CTA) and thiol-ene reactions. GPC and 1H NMR results indicated that the allyl group had no adverse effect on the RAFT-controlled polymerization of NIPAAm and PEG-A, and the new CTA could efficiently control the polymerizations. Employing radical thiol-ene and Michael addition reactions, heterotelechelic α-allyl, ω-carboxylic acid-PNIPAAm was first aminolyzed in the presence of maleimide-modified biotin and subsequently reacted with GSH via radical thiol-ene addition to yield α-GSH, ω-biotin functionalized PNIPAAm. Glutathione S-transferase (GST) and streptavidin (SAv) were coupled in solution with heterofunctional PNIPAAm via bioaffinity interactions. Separately, α-GSH, ω-biotin functionalized PNIPAAm was further shown to bind GST-tagged Rac1, a potential cancer marker, and biotin-tagged bovine serum albumin (BSA).Article Citation - WoS: 40Citation - Scopus: 46Influence of Tert-Amine Groups on the Solubility of Polymers in Co2(Elsevier Ltd., 2009) Kılıç, Sevgi; Wang, Yang; Johnson, J. Karl; Beckman, Eric J.; Enick, Robert M.There is a need to develop new, non-fluorous polymers that are highly soluble in CO2. Experimental evidence indicates that tertiary amine and pyridine groups may exhibit favorable Lewis acid-Lewis base type interactions with CO2. It is therefore reasonable to assume that incorporation of tertiary amines into the side chain or backbone of non-fluorous polymers may impart a degree of CO2-solubility to the polymer. We present experimental results for eight different tert-amine-containing polymers. Of these polymers, only propyl dimethylamine-functionalized poly(dimethylsiloxane) is soluble in CO2 at temperatures and pressures accessible in our experiments, but even this polymer is less soluble than non-functionalized poly(dimethylsiloxane) at the same chain length. We have performed ab initio calculations on tertiary amine-containing moieties representative of some of the polymers examined experimentally. Our calculations confirm that amine-CO2 interactions are indeed energetically favorable. However, we also find that the moiety self-interactions are typically more favorable than the CO2-moiety interactions. This indicates that the lack of solubility of amine-containing polymers in CO2 is a direct result of strong polymer-polymer interactions.