Chemical Engineering / Kimya Mühendisliği
Permanent URI for this collectionhttps://hdl.handle.net/11147/14
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Article Citation - WoS: 2Citation - Scopus: 2Morphology of Sodium Salt of Calf Thymus Dna on Mica, Alumina, and Silica Surfaces: Effect of Solvent and Drying Method(Taylor and Francis Ltd., 2017) Yetgin, Senem; Balköse, DevrimInvestigation of morphology of deoxyribonucleotide triphosphate (DNA) dried on different surfaces by atomic force microscopy (AFM) is important in DNA research that is focused on subjects of condensation for gene therapy, sizing, DNA mapping, and cancer examination. The solvent, the surface type, and the method of drying effect the morphology of DNA on solid surfaces. Ethanol and water were used as solvents, flat mica, silica, and alumina surfaces were used as the substrates in the present study. Different methods such as ambient air-drying, N2-forced flow regime drying, and freeze-drying have been applied to droplets of DNA solutions in water or ethanol on the substrates. Forced flow drying regime causes nonlinear DNA attachment on the surface and self-assembly. DNA vertical distance on mica surface was found to be 6 and 1.4 nm for DNA dried in ambient air from ethanol and water solutions, respectively. It was 1.6 nm for N2 flow drying of aqueous DNA solution on mica surface. It was 4.6, 4.6, and 1.99 nm for ambient, N2 flow, and freeze-dried aqueous DNA on alumina surfaces, respectively. Aqueous solution of DNA dried under N2 flow on silica surface had 0.8 nm vertical distance. The smallest standard deviation of 0.05 nm was observed for DNA dried under N2 flow on alumina surface.Article Citation - WoS: 5Citation - Scopus: 5Methylene Blue Adsorption From Aqueous Solutions To Flexible Poly(vinyl Chloride) Silica Composites(John Wiley and Sons Inc., 2015) Yetgin, Senem; Ulutan, Sevgi; Balköse, DevrimMethylene blue (MB) adsorption studies were performed with poly(vinyl chloride)-(dioctyl phthalate)-silica composites, which were obtained by using plastisol-plastigel technology. The films were flexible, having elastic modulus of 1.0-1.5 GPa. Diminishing MB concentration in the aqueous phase was followed as the adsorption process advanced by using visible spectroscopy. Contributions of the individual components of the composites to adsorption were also investigated. Although the MB adsorption capacity was extensively high for silica, it was moderate for the composite, most likely owing to the occlusion of pores of silica by plasticizer to some extent. The improvement of MB adsorption capacity of the composites as the silica ratio increased was explicitly deduced from the optical microscopy photographs. The diffusion coefficients of MB through the composites were 5 × 10-13, 6 × 10-13, and 3 × 10-13 m2 s-1 with regression coefficients of 0.73, 0.89, and 0.88 for 0, 2, and 16% silica-containing composites, respectively. Because of the slow diffusion of MB in poly(vinyl chloride)-silica composites, using them as dynamic column adsorbent was not practical. However, these versatile plastics can be used as plastic labels, colored clothing, leather substitutes, antimicrobial medical devices, and laser printable surfaces.Article Citation - WoS: 11Citation - Scopus: 12Calf Thymus Dna Characterization and Its Adsorption on Different Silica Surfaces(Royal Society of Chemistry, 2015) Yetgin, Senem; Balköse, DevrimDNA adsorption is the initial stage of gene therapy for drug delivery systems and solid phase extraction methods of DNA purification. High pore volume and high adsorption capacity are simple requirements not only for producing 'smart' drug delivery systems but also the development of purification kits. Silica is the most used material for this purpose. The present study aimed at elucidating the calf thymus DNA biosorption process by the characterization of calf thymus DNA and silica to increase the efficiency of the currently used silica material. Mesoporous silica has long been used for DNA adsorption and silica aerogel is the new adsorbent investigated in the present study. When DNA solution was freeze dried on a silica wafer, self-assembled super helices formed as shown by atomic microscopy (AFM). Thus DNA existed not as single molecules but as large sized agglomerates in water. Thus it could be adsorbed in the macropores and on the external surface of adsorbents. Adsorption of calf thymus DNA to a silica aerogel, a mesoporous silica gel and a silica wafer was investigated in the present study. Silica aerogel was synthesized from TEOS by a supercritical ethanol drying process. The DNA adsorption capacity of the silica aerogel was nearly two times that of the mesoporous silica gel due to its macroporous structure and its higher silanol content. Silica aerogel was found to be a very promising material for DNA adsorption. Therefore silica aerogel can be considered as a good candidate for the delivery of DNA.Article Citation - WoS: 1Citation - Scopus: 1Flexible Pvc-Silica Composites as an Adsorptive Material for Water Soluble Dyes(Smithers Rapra Technology, 2013) Ulutan, Sevgi; Yetgin, Senem; Balköse, DevrimMethylene Blue (MB) adsorption studies were performed on flexible Polyvinyl Chloride/Silica composites which were obtained by using plastisol-plastigel technology. Change of MB concentration in aqueous phase as the adsorption process advanced was followed by using visible spectroscopy. The diffusion of MB through the composites exhibited non-Fickian behavior with a diffusivity of 10-11 m2s-1. Making use of such PVC-silica composite sheets as column packing, the packing time will be reduced and the surface available for diffusion will be increased. © 2013 Smithers Rapra Technology.