Chemical Engineering / Kimya Mühendisliği
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Article Citation - WoS: 69Citation - Scopus: 77Novel Zein-Based Multilayer Wound Dressing Membranes With Controlled Release of Gentamicin(John Wiley and Sons Inc., 2019) Kimna, Ceren; Tamburacı, Sedef; Tıhmınlıoğlu, FundaRecently, functional multilayer scaffolds with controlled drug release ability come into prominence for wound healing applications to mimic the layered structure of skin tissue and prevent the possible infections at the defect site. In this study, controlled antibiotic releasing zein bilayer membranes were fabricated for treatment of acute skin infections. Gentamicin loaded fibers were prepared by electrospinning on the membrane surface. Membranes were characterized with scanning electron microscope, atomic force microscopy, Fourier transform infrared spectroscopy, contact angle, mechanical analysis, swelling, degradation, and water vapor permeability studies. In vitro cytotoxicity, cell attachment, and proliferation were investigated. Cell attachment on fiber layer was observed with fluorescence imaging. Fabricated fibers showed structural similarity to the skin tissue layers with a fiber diameter range of 350-425 nm and film thickness in the range of 311-361 mu m. Mechanical properties were found compatible with the skin tissue. In addition, membranes showed antimicrobial activity against Staphylococcus aureus and Escherichia coli. The sustained release was achieved with a cumulative release of 94%. Membranes did not show any cytotoxic effect. NIH/3T3 and HS2 cell lines were proliferated on each layer mimicking the multilayer skin tissue. Hence, zein-based bilayer membrane showed promising properties to be used as a potential antimicrobial wound dressing for skin tissue regeneration. (c) 2018 Wiley Periodicals, Inc.Article Citation - WoS: 23Citation - Scopus: 27Use of Deep Eutectic Solvents in the Enzyme Catalysed Production of Ethyl Lactate(Elsevier, 2019) Arıkaya, Azime; Ünlü, Ayşe Ezgi; Takaç, SerpilThe use of deep eutectic solvents (DESs) in the lipase-catalysed esterification of lactic acid with ethanol was explored by screening several DESs. Choline chloride:glycerol (1:2) was the most effective DES and provided 28.7% yield of ethyl lactate under the following conditions: 10% (v/v) of water content in DES, 3 M of initial lactic acid concentration, 5 M of initial ethanol concentration, 30 mg/mL of enzyme concentration, 50 degrees C temperature and 200 rpm agitation rate. Individual and combined effects of the reaction medium components on the enzyme activity were investigated and it was discovered that DES stimulated the enzyme activity while reactants inhibited it. A kinetic model that obeys the Ping-Pong Bi-Bi mechanism with ethanol inhibition was suggested. The kinetics parameters were determined as r(max) = 0.401 mol/L h, the Michaelis constants K-A = 1.657 mol/L and K-B = 0.799 mol/L, the inhibition constant K-iB = 0.156 mol/L. The model reasonably predicted the experimental data. The activation energy was found to be 43.28 kJ/mol. Mass transfer limitations in the reaction medium were negligible. The results are promising for further studies that will research on the use of green solvents in enzyme catalysed lactic acid esterification reactions.Article Citation - WoS: 30Citation - Scopus: 44A Review on Computational Modeling Tools for Mof-Based Mixed Matrix Membranes(MDPI Multidisciplinary Digital Publishing Institute, 2019) Keskin, Seda; Alsoy Altınkaya, SacideComputational modeling of membrane materials is a rapidly growing field to investigate the properties of membrane materials beyond the limits of experimental techniques and to complement the experimental membrane studies by providing insights at the atomic-level. In this study, we first reviewed the fundamental approaches employed to describe the gas permeability/selectivity trade-off of polymer membranes and then addressed the great promise of mixed matrix membranes (MMMs) to overcome this trade-off. We then reviewed the current approaches for predicting the gas permeation through MMMs and specifically focused on MMMs composed of metal organic frameworks (MOFs). Computational tools such as atomically-detailed molecular simulations that can predict the gas separation performances of MOF-based MMMs prior to experimental investigation have been reviewed and the new computational methods that can provide information about the compatibility between the MOF and the polymer of the MMM have been discussed. We finally addressed the opportunities and challenges of using computational studies to analyze the barriers that must be overcome to advance the application of MOF-based membranes.Correction Corrigendum To “use of Deep Eutectic Solvents in the Enzyme Catalysed Production of Ethyl Lactate” [process Biochem. 84 (2019) 53–59](Elsevier, 2019) Arıkaya, Azime; Ünlü, Ayşe Ezgi; Takac, Serpil[No abstract available]Conference Object Investigation of Therapeutic Effects of Doxorubicin Loaded Microbubbles in In-Vivo Breast Cancer Model(Springer, 2017) Serinan, Efe Özgür; Barış, Mustafa; Kürkçü, Gülşah; Önercan, Cansu; Çalışır, Meryem; Altun, Zekiye; Aktaş, Safiye; Aydın, Melek; Kılıç Özdemir, Sevgi; Yılmaz, Osman; Özdemir, Ekrem[No abstract available]Article Citation - WoS: 20Citation - Scopus: 24In Vitro Evaluation of Microleakage and Microhardness of Ethanolic Extracts of Propolis in Different Proportions Added To Glass Ionomer Cement(Journal of Clinical Pediatric Dentistry, 2016) Altunsoy, Mustafa; Tanrıver, Mehmet; Turkan, Uğur; Uslu, Mehmet Emin; Silici, SibelObjective: To evaluate the effect of ethanolic extracts of propolis (EEP) addition in different proportions to glass ionomer cement (GIC) on microleakage and microhardness of GIC. Study design: The cement was divided into four groups: one using the original composition and three with 10%, 25%, and 50% EEP added to the liquid and then manipulated. For microleakage assessment, sixty primary molars were randomly divided into four groups (n=15). Standard Class II cavities were prepared and then filled with EEP in different proportions added to GICs. Microleakage test was performed using a dye penetration method The data were analyzed using one-way ANOVA and Mann - Whitney U tests (alpha = 0.05). Disc shaped specimens were prepared from the tested GIC to determine Vickers hardness (VHN). The data were analyzed using one-way ANOVA and post hoc Tukey test (alpha = 0.05). Results: There were no statistically significant differences between the groups in terms of microleakage (p > 0.05). There were statistically signcant differences between the VHN values of groups (p < 0.05). Increasing addition of EEP to GIC statistically significantly increased VHN value of GIC (p < 0.05). Conclusions: The addition of EEP to GIC increased the microhardness of the GIC and did not adversely affect the microleakage. Thus, it might be used during routine dental practice due to its antibacterial propertiesArticle Citation - WoS: 26Citation - Scopus: 28Osteoconductive 3d Porous Composite Scaffold From Regenerated Cellulose and Cuttlebone-Derived Hydroxyapatite(SAGE Publications Inc., 2019) Palaveniene, Alisa; Tamburacı, Sedef; Kimna, Ceren; Glambaite, Kristina; Baniukaitiene, Odeta; Tıhmınlıoğlu, Funda; Liesiene, JolantaRecently, usage of marine-derived materials in biomedical field has come into prominence due to their promising characteristics such as biocompatibility, low immunogenicity and wide accessibility. Among these marine sources, cuttlebone has been used as a valuable component with its trace elemental composition in traditional medicine. Recent studies have focused on the use of cuttlebone as a bioactive agent for tissue engineering applications. In this study, hydroxyapatite particles were obtained by hydrothermal synthesis of cuttlebone and incorporated to cellulose scaffolds to fabricate an osteoconductive composite scaffold for bone regeneration. Elemental analysis of raw cuttlebone material from different coastal zones and cuttlebone-derived HAp showed that various macro-, micro- and trace elements - Ca, P, Na, Mg, Cu, Sr, Cl, K, S, Br, Fe and Zn were found in a very similar amount. Moreover, biologically unfavorable heavy metals, such as Ag, Cd, Pb or V, were not detected in any cuttlebone specimen. Carbonated hydroxyapatite particle was further synthesized from cuttlebone microparticles via hydrothermal treatment and used as a mineral filler for the preparation of cellulose-based composite scaffolds. Interconnected highly porous structure of the scaffolds was confirmed by micro-computed tomography. The mean pore size of the scaffolds was 510 mu m with a porosity of 85%. The scaffolds were mechanically characterized with a compression test and cuttlebone-derived HAp incorporation enhanced the mechanical properties of cellulose scaffolds. In vitro cell culture studies indicated that MG-63 cells proliferated well on scaffolds. In addition, cuttlebone-derived hydroxyapatite significantly induced the ALP activity and osteocalcin secretion. Besides, HAp incorporation increased the surface mineralization which is the major step for bone tissue regeneration.Article Citation - Scopus: 8Biofuel Production From Nannochloropsis Oculata Microalgae in Seawater Without Harvesting and Dewatering Over Alumina-Silicate Supported Nickel Catalysts(Elsevier, 2018) Deliismail, Özgün; Özdoğru, Bertan; Şeker, ErolThe aim of this work was to study the production of biofuels from marine Nannochloropsis oculata without harvesting and dewatering over the single step sol-gel made alumina-silicate supported nickel catalysts at 80 °C and 1.0 atm. Sulfuric acid, hydrochloric acid, and nitric acid were used in the sol-gel to study the effect of acid type on catalyst activities. The catalyst made using sulfuric acid resulted in 74% microalgae conversion as compared to the catalysts made with other acids. Treatment of this catalyst with ~35 g of NaCl per kg of water at 80 °C and 1.0 atm for 24 h increased microalgae conversion to 91.5% under the same reaction condition and the bio-fuels ranging from mono/polysaccharides, polyols to esters and fatty acids were produced. This study showed that nickel and 25.1 ?mol/g of total acidity and acidic strength having 130–380 °C of temperature range was necessary to achieve 91.5% conversion. © 2018 Elsevier LtdArticle Citation - WoS: 30Citation - Scopus: 37Production and Characterization of a Novel Bilayer Nanocomposite Scaffold Composed of Chitosan/Si-nhap and Zein/Poss Structures for Osteochondral Tissue Regeneration(American Chemical Society, 2019) Tamburacı, Sedef; Çeçen, Berivan; Üstün, Özcan; Ergür, Bekir Uğur; Havıtçıoğlu, Hasan; Tıhmınlıoğlu, FundaOsteochondral tissue is hard to regenerate after injuries or degenerative diseases. Traditional treatments still have disadvantages, such as donor tissue availability, donor site morbidity, implant loss, and limited durability of prosthetics. Thus, recent studies have focused on tissue engineering strategies to regenerate osteochondral defects with different scaffold designs. Scaffolds have been developed from monolayer structures to bilayer scaffolds to repair the cartilage-bone interface and to support each tissue separately. In this study, Si-substituted nanohydroxyapatite particles (Si-nHap) and silica-based POSS nanocages were used as reinforcements in different polymer layers to mimic a cartilage-bone tissue interface. Chitosan and zein, which are widely used biopolymers, are used as polymer layers to mimic the structure. This study reports the development of a bilayer scaffold produced via fabrication of two different nanocomposite layers with different polymer-inorganic composites in order to satisfy the complex and diverse regenerative requirements of osteochondral tissue. The chitosan/Si-nHap microporous layer and the zein/POSS nanofiber layer were designed to mimic a bone-cartilage tissue interface. Bilayer scaffolds were characterized with SEM, compression, swelling, and biodegradation tests to determine morphological, physical, and mechanical properties. The results showed that the bilayer scaffold had a structure composed of microporous and nanofiber layers joined at a continuous interface with appropriate mechanical properties. Furthermore, in vitro cell culture studies have been performed with LDH, proliferation, fluorescence imaging, and ALP activity assays using osteosarcoma and chondrosarcoma cell lines. ALP expression levels provide a good illustration of the improved osteogenic potential of a porous chitosan/Si-nHap layer due to the Si-doped nHap incorporation. Histological data showed that both fiber and porous layers that mimic the cartilage and bone sections exhibit homogeneous cell distribution and matrix formation. Histochemical staining was used to determine the cell proliferation and ECM formation on each layer. In vitro studies indicated that zein-POSS/chitosan/Si-nHap nanocomposite bilayer scaffolds showed promising results for osteochondral regeneration. Copyright © 2019 American Chemical Society.Article Citation - WoS: 5Citation - Scopus: 6Development of an Optical Tyrosinase Biosensor (tca) for Detection of “parathion-Methyl”(Emerald Group Publishing Ltd., 2019) Polatoğlu, İlker; Çakıcıoğlu Özkan, FehimePurpose: This paper aims to present a novel and cost-effective optical biosensor design by simple preparation method for detection of “parathion-methyl,” which is a model pesticide pose to public health and the environment. Design/methodology/approach: The optical enzyme biosensor (TCA) for detection of pesticide “parathion-methyl” was developed on the basis of immobilization of tyrosinase enzyme on chitosan film by adsorption technique. The analytic performance of TCA was investigated by measuring its activity with Ultraviolet (UV) visible spectrophotometer. Findings: Uniform porous network structure and protonated groups of chitosan film provided a microenvironment for tyrosinase immobilization evident from Fourier transform infrared (FTIR) spectroscopy and Atomic Force Microscopy analysis. TCA has a wide linear detection range (0-1.03 µM) with high correlation coefficient and it can detect the parathion-methyl concentration as low as 159 nM by noncompetitive inhibition kinetics. Using the TCA sensor both for ten times and at least 45 days without a significant loss in its activity are the indicators of its good operational and storage stability. Moreover, TCA can be applicable to tap water, providing a promising tool for pesticides detection. Originality/value: This is the first time to use the in situ analytical technique that can improve the performance of optical enzyme sensor provided to control the pesticide residue better with respect to traditional techniques. The effect of organic solvents on the performance of optical enzyme biosensor was investigated. Inhibition kinetic of the solvents rarely encountered in literature was also studied besides the pH and temperature tolerance of the optical biosensor.