GCRIS

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Molecular and Cellular Level Adaptations of Bone Marrow Mesenchymal Progenitor Cells To Chemical and Physical Signals
(Izmir Institute of Technology, 2020) Baskan Erbilgiç, Öznur; Özçivici, Engin; Atabey, Safiye Neşe
Mechanical forces are the integral determinants in cell and tissue homeostasis and regeneration, and they can affect numerous biological process from proliferation to fate determination. Mechanical forces that possess low magnitude and high frequency characteristics are also known as low intensity vibrations (LIVs). These signals were studied widely on many cell types for regenerative purposes, however most of these studies select components of LIV signals (e.g. magnitude, frequency, duration, etc.) arbitrarily. Here, we addressed the effect of LIV applied frequency, LIV daily exposure time and fate induction on the viability of preadipocyte 3T3-L1 cells. For this, we performed a frequency sweep that was ranging from 30 to 120 Hz with 15 Hz increments applied for 5, 10 or 20 minutes during quiescent growth or adipogenesis for up to 10 days. Results suggest that the applied frequency and fate induction was an important determinant of cell viability, lipid droplet physiology, triglyceride concentration, cell density and adipogenic-specific gene expression while daily exposure time had no effect. These findings contribute to the effort of optimizing a relevant mechanical stimulus that can inhibit adipogenesis. On the other hand, random and aligned PAN/PPy nanofibers were investigated as a scaffold material for osteogenic differentiation of D1 ORL UVA mouse bone marrow mesenchymal stem cells. Cells were able to attach and grow on nanofibers confirmed by cell viability results. Stem cells that were cultured with osteogenic induction were able to mineralize on electrospun nanofibers based on alizarin red and Von Kossa dye staining. For aligned PPy nanofibers, mineralization occurred in the fiber alignment direction. Consequently, PAN/PPy nanofibrous mats in both random and aligned forms would be potential candidates for bone tissue engineering.
The Effects of Engineered Silica Nanoparticles on the Cellular Behaviours of Human Hepatocellular Carcinoma Cell Lines
(Izmir Institute of Technology, 2018) Tüncel Çerik, Özge; Özçelik, Serdar; Atabey, Safiye Neşe
Physicochemical properties of the silica nanoparticles have vital roles in determining the physiological behaviours of the cells. Applications of nanoparticle treatments have some outcomes as a response of the cells in living systems as mitochondrial disruption, oxidative stress, reactive oxidative species (ROS) generation, altered cell cycle regulation and DNA damage. In this study 10 and 100 nm sized SiNPs were prepared and physicochemically characterized in the second part. Well characterized silica nanoparticles were used to assess the cytotoxicity and genotoxicity of the hepatocellular carcinoma cell lines as HuH-7 and SK-HEP-1 and lymphocytes. The cell cycle analysis was performed for engineered SiNPs to elucidate the DNA damage in the third part. In the fourth part mitochondrial responses of the cells were determined by real time confocal microscopy at single cell level. An image analysis method for evaluating the cellular responses by mitochondrial staining was developed. DCF stained cells were analyzed in order to assess the production of ROS in the cells. Localization of the SiNPs were determined by lysosomal and mitochondrial staining. Pearson correlation coefficients of the images were used for evaluating the colocalization of organelles with SiNPs. Lastly, diffusion coefficients of the SiNPs in the cells were determined by quantitative confocal microscopy. The SiNPs were found as non-toxic up to 200 μg/ml for 5 days. The SiNPs did not induce the formation of micronuclei in lymphocytes. The SiNPs were not cause an arrest in cell cycle progression. Mitochondrial potentials were not changed after SiNP exposure as well. They were mostly internalized at 30 minutes in both cell line in lysosomal parts without increasing ROS in the cells. It can be concluded that the SiNPs can be safely used for targeted delivery of organic compounds, biological molecules or drugs in medicine, and may be utilized as a probe system in biological studies.

Phd Degree / Doktora

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