Phd Degree / Doktora
Permanent URI for this collectionhttps://hdl.handle.net/11147/2869
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Doctoral Thesis Determination of Vitamin D by Sensor Technologies Based on Molecular Imprinted Polymers(Izmir Institute of Technology, 2022) Ölçer, Yekta Arya; Demir, Mustafa Muammer; Eroğlu, Ahmet Emin; Eroğlu, Ahmet Emin; Demir, Mustafa Muammer; 04.01. Department of Chemistry; 03.09. Department of Materials Science and Engineering; 03. Faculty of Engineering; 04. Faculty of Science; 01. Izmir Institute of TechnologyVitamin D is an essential nutrient in the body; it plays important roles in human health. Both its lack and excess can have health risks. As a consequence, there is a great demand for development of simple and precise detection methods for vitamin D derivatives in different samples. Molecular imprinting polymers (MIPs) are artificial receptors that can recognize target molecules in solution. In this study, two different polymerization techniques were used to obtain MIP/NIP sorbents/films for the detection of vitamin D3. Firstly, molecular imprinted solid phase extraction (MISPE) method was proposed prior to HPLC-DAD analysis. Optimized parameters were as follows; sorbent amount of 5.0 mg for 5.0 mL of 1.0 mg/L vitamin D3 in 90:10 (v/v) ratio of H2O:MeOH solution, 5 hours sorption time and MeOH:HOAc ratio of 90:10 (v/v) as desorption solution. The accuracy of the method was verified with spike recovery test for PBS:MeOH in a ratio of 90:10 (v/v) and overall recovery was found as 85.1 (±4.3, n=3). In latter case, a quartz crystal microbalance (QCM) method was proposed for determination of vitamin D3. Electrochemical polymerization of poly(4-vinylpyridine) MIP/NIP films were achieved on gold working electrode by cyclic voltammetry (CV). Mass-transfer ability of the polymer films were analyzed by electrochemical impedance spectroscopy (EIS). The electrochemical QCM (eQCM) was used to develop thin polymer films on quartz crystals and vitamin D3 determination was achieved by QCM. In a preliminary test, as small a concentration as 0.0100 mg/L vitamin D was detected with the QCM method.Doctoral Thesis Production and Characterization of Porous Ceramics for High Temperature Applications(Izmir Institute of Technology, 2022) Akdoğan, Yaşar; Ahmetoğlu, Çekdar Vakıf; Ahmetoğlu, Çekdar Vakıf; Akdoğan, Yaşar; 03.09. Department of Materials Science and Engineering; 03. Faculty of Engineering; 01. Izmir Institute of TechnologyThis thesis focuses on the production and characterization of different porous polymer derived ceramic (PDC) components (foams, additively manufactured (AM) honeycombs, and aerogels) and demonstrates their potential for high temperature applications, including gas permeability (up to ~700 o C), molten metal filtration, and heat exchanger. The foams were produced via the replica technique and different pore sizes, ranging from 300 μm to 2 mm, silicon oxycarbide (SiOC) ceramic foams were able to be formed. The average total porosity of the foams was 96 vol% with a specific surface area (SSA) of ~80 m2 /g. AM-made honeycomb-like cellular structures with different cell sizes (578 μm, 1040 μm) were obtained via fused filament fabrication. Finally, SiOC aerogels were synthesized using siloxane resin, then dried at ambient pressure and room temperature. The produced SiOC aerogels showed a total porosity of around 80 vol% and an SSA reaching 250 m2 /g. Regarding the high temperature applications of porous PDC components, initially, the gas permeability of SiOC foams was tested, and the results showed stability up to 700 °C in the air without any loss of functionality, offering reusability even in aggressive environments. In the subsequent studies, filtration of molten aluminum alloy was tested using various porous components. PDC foams demonstrated better performance in comparison to the AM-made cellular structures and commercial SiC foams. Finally, heat exchange analysis was performed to evaluate the heat transfer of SiOC foams, and an increase in pressure drop was found to be directly proportional to the rate of increase in air velocity.Doctoral Thesis Structural Engineering of Halide Perovskites and Their Association With Organics for Optoelectronic Applications(Izmir Institute of Technology, 2022) Yüce, Hürriyet; Yüksel Aldoğan, Kıvılcım; Demir, Mustafa Muammer; Demir, Mustafa Muammer; Yüksel Aldoğan, Kıvılcım; 03.05. Department of Electrical and Electronics Engineering; 03.09. Department of Materials Science and Engineering; 03. Faculty of Engineering; 01. Izmir Institute of TechnologyHalide perovskites show great potential for next-generation optoelectronic applications due to their unique photophysical properties with low production costs. However, their stability issues still prevent their commercialization on a large scale. The main objective of this dissertation is to understand the additive engineering strategy to improve the quality of halide perovskite films and nanocrystals for solar cells and lightemitting diodes. There are two sections to this dissertation: The first section focuses on halide perovskite films and solar cells while the second one focuses on halide perovskite nanocrystals and white light-emitting diodes. In the first section of this dissertation, in Chapter 2-3, the improvement of Sn-Pb and methylammonium-free Pb-based halide perovskite films by additives are investigated. The suppression of defects via additives is demonstrated through structural, elemental, and optical analyses. The improved performance of perovskite solar cells by decreasing defects is also shown. In Chapter 4-5, the change in stability and optical properties of the halide perovskite nanocrystals by means of additive engineering and their applications in white light-emitting diode are studied. The results in this dissertation represent a new approach to improving the structural and photophysical properties of halide perovskites and introduce a new perspective of additive engineering method in the field of halide perovskite-based optoelectronic applications.Doctoral Thesis Development of Novel Anticounterfeiting Technologies Using Heavy Metal Free Nanoparticles(Izmir Institute of Technology, 2021) Demir, Mustafa Muammer; Taşcıoğlu, Didem; Özçelik, Serdar; Özçelik, Serdar; Demir, Mustafa Muammer; 04.01. Department of Chemistry; 03.09. Department of Materials Science and Engineering; 01. Izmir Institute of Technology; 03. Faculty of Engineering; 04. Faculty of ScienceCounterfeiting, the act of illegally copying a product, document or currency, is a growing problem and causes economic losses. Anticounterfeiting technology uses fluorescent inks that are invisible to the naked eye in daylight, but become visible under UV light. However, these inks have problems such as fading when exposed to sunlight or room light for a long time and disappear completely over time. This is due to the relevant inks are made using organic dyes that fade. The inks used in anticounterfeiting application preventing copying of secure documents such as banknotes, passports and ID cards must be health-friendly and chemically and optically stable for years. All of the existing security materials and equipments for ID cards, driver's licenses, passports, banknotes used in our country are imported. In this study, our aim is to create a new generation of security materials and codes to combat counterfeiters and to verify the generated security codes in a simple, efficient and fast way. In this study, it is aimed to produce nanoparticles, which do not contain heavy metals and show optical stability for a long time, emitting in visible region, on the basis of the security codes created. For this purpose, water and solvent-based nanoparticles synthesized which are non-toxic should have a long-term optical stability. The synthesized nanoparticles act like a pigment in security codes. The photoluminescence (emission color) of the security codes can be adjusted by size and chemical composition of nanoparticles. In this study, colloidally monodispersed and highly photoluminescent InP based nanoparticles were synthesized by the hot-injection approach under an inert atmosphere. In addition, a protective shell (ZnS, ZnSe) coating methods have been applied to provide optical stability to InP nanoparticles. Moreover, carbon-based nanoparticles with high optical stability and being dispersible in water were synthesized using the bottom-up method. Security codes that cannot be detected in daylight have been created on different subtrates (paper, polymer, glass, etc.) by using screen printing and inkjet printing methods, which are well known printing methods using the synthesized nanoparticles. In addition, the authenticity of the security codes was checked using a commercial fiber optic based spectrometer (Ocean Optics spectrometer) and a handy hand-held optical device called the Quantag sensor developed by Quantag Nanotechnologies. Thus, a verification method that can be distinguished by a simple detection device is proposed. The synthesized nanoparticles were furthermore dispersed in a polymer solution to create random droplet and droplet/fiber patterns by electrospinning method. Thus, unique and inimitable security codes detectable under UV light were created which may be used in the fight against counterfeiting. To check the authenticity of the original security codes created; images collected with a simple smartphone microscope and a database was created in which the original patterns were recorded. The originality of the random patterns obtained was checked by comparing it with the patterns recorded in the database. In addition, the spectral information of the particle from the droplet/fiber pattern obtained was determined with a simple hand-held device (Ocean Optics optical spectrometer). Thus, by reading spectral information from the pattern, the spectral signature of the nanoparticles was determined and thus a second-step security was created. In this way, a two-stage anticounterfeiting technology that is impossible to imitate has been developed. As a conclusion, it is believed that the security codes developed in this study will pave the way for the commercialization of quantum labeling technology.Doctoral Thesis Terahertz Imaging Applications and Characterization of Ito Thin Films Grown by Magnetron Sputtering(Izmir Institute of Technology, 2020) Köseoğlu, Hasan; Özyüzer, Lütfi; Özyüzer, Lütfi; 04.05. Department of Pyhsics; 04. Faculty of Science; 01. Izmir Institute of TechnologyTHz radiation (0.1-10 THz) has unique properties not found in other parts of the electromagnetic spectrum. THz technological applications need high-performance THz imaging and spectroscopy system components such as THz filters, modulators, reflectors. Transparent conducting oxides (TCOs) meet these needs in the THz field. Indium tin oxide (ITO) thin film is one of the most used materials among the TCOs. However, the research on the THz properties of ITO film is currently at an early stage. In this thesis, ITO thin films were deposited on borosilicate (BS), fused silica (FS) and PET substrates using large area magnetron sputtering system. Optical, structural and electrical properties of the ITO films on different substrates were analyzed. Moreover, the effect of electro-annealing in vacuum and air on the properties of ITO films grown on BS and FS substrates were investigated. Furthermore, CW THz imaging system were designed to take THz images of some objects and to analyze THz properties of ITO films grown on FS and PET substrates. Our findings indicate that electrical, structural and optical properties of ITO films can be improved by electro-annealing in air and vacuum. We addressed that electro-annealing in vacuum is more appropriate technique for the applications in industry. We also addressed the importance of oxygen partial pressure and ITO film thickness to adopt them as a transparent electrode in flexible devices. Moreover, our analysis about the THz properties of ITO films on FS and PET substrates showed that fabricated ITO films have potential application in THz field such as THz filters, modulators and reflectors.Doctoral Thesis Development of Plasmonic Nanostructures for Photothermal Therapy of Prostate and Breast Cancer(Izmir Institute of Technology, 2019) Tomak, Aysel; Bulmuş Zareie, Volga; Tomak, Aysel; Şahin, Hasan; Bulmuş, Volga; Şahin, Hasan; 03.01. Department of Bioengineering; 04.04. Department of Photonics; 03. Faculty of Engineering; 04. Faculty of Science; 01. Izmir Institute of TechnologyThe aim of this thesis is to synthesize gold nanorods (AuNRs) and lipid-stabilized nanobubbles containing AuNRs and investigate the potential of these plasmonic nanostructures as photothermal therapy agents for breast and prostate cancer through in vitro cell culture experiments. For this aim, firstly, AuNRs were synthesized at varying aspect ratios (ARs) and characterized via several techniques including UV-Vis/NIR spectroscopy, scanning electron microscopy (SEM), atomic force microscopy (AFM), inductively coupled plasma-mass spectroscopy (ICP-MS), electrophoretic light scattering (ELS) and X-ray photoelectron spectroscopy (XPS). The surface of AuNRs was modified with a biocompatible polymer, poly(ethylene glycol) (PEG), via ligand exchange method. Cytotoxicity, cell uptake and photothermal effects of AuNRs were investigated via in vitro cell culture experiments using human prostate cancer (DU 145) and epithelial (RWPE-1), breast cancer (MCF7) and epithelial (MCF 10A) cell lines. It was concluded that AuNRs (AR=4.0) were superior than AuNRs (AR=7.0) in terms of cell viability and photothermal effect. Separately, a non-commercial antibody (Ab) targeting a specific sialic acid derivative on the plasma membrane of DU 145 and MCF7 cancer cells was conjugated to AuNRs. Conjugations were characterized with the same techniques and investigated via in vitro cytotoxicity and cell uptake experiments. The Ab-conjugated AuNRs displayed the capability of selective targeting prostate cancer cells. Additionally, lipid-stabilized AuNRs and lipid-stabilized nanobubbles containing AuNRs (AuNBs) were synthesized for the first time and characterized using UV-Vis/NIR spectroscopy, SEM, ICP-MS and ELS techniques. Lipid-stabilized AuNRs were successfully synthesized using varying lipid mixtures instead of cationic, toxic surfactant. Separately, AuNBs were synthesized by combining PEG modified AuNRs with DPPC: DSPE-PEG lipid film under sonication and gas stream. AuNBs showed the same or significantly lower toxicity depending on the cell types and the same photothermal effect with respect to AuNRs (AR=4.0) upon irradiation under laser at 808 nm.Doctoral Thesis Single-Photon Generation From Defects and Manipulation With Nanostructures(Izmir Institute of Technology, 2019) Aygün, Gülnur; Aygün, Gülnur; Tarhan, Enver; Tarhan, Enver; Tarhan, Enver; Aygün Özyüzer, Gülnur; 04.05. Department of Pyhsics; 04. Faculty of Science; 01. Izmir Institute of TechnologySingle-photon sources are essential components for several applications in the field of quantum information technologies, such as quantum cryptology and quantum computation. To this aim, efficient generation and detection of single-photons are the crucial to be achieved. Among single-photon sources that are extensively studied in the literature, defect centers in solid are very promising due to their room temperature operation and their stability. The aim of this thesis is to generate single photons at room temperature and control their optical properties by nanostructures. Single-photon emission from TMDCs originates from localized weakly bound excitons at cryogenic temperatures due to their small exciton binding energies. However, room temperature SP emission from WS2 can be obtained by creatingWO3 defects. In our study, room temperature emission from defects in WO3 was investigated. Density functional theory calculations showed that the source of the emission can be oxygen defects. Additionally, the emission was brightened by plasmonic gold nanoparticles. Furthermore, defects in two-dimensional (2D) hexagonal boron nitride (hBN) is offered as an efficient room temperature SPS. HBN is a wide bandgap 2D material, in which defect centers create discrete energy level to generate single photons. In our study, reversible single-photon emission control from defects in hBN was demonstrated by Förster-like resonance energy transfer between the single-photon emitter and a graphene layer. To this aim an ionic liquid based device structure was used.Doctoral Thesis Magnetic Effect in the Biological Functioning of Hemoglobin: Dft+qmc Approach Within an Effective Multi-Orbital Anderson Impurity Model(Izmir Institute of Technology, 2019) Mayda, Selma; Demir, Mustafa Muammer; Mayda, Selma; Bulut, Nejat; Bulut, Nejat; Demir, Mustafa Muammer; 04.05. Department of Pyhsics; 01. Izmir Institute of Technology; 03.09. Department of Materials Science and Engineering; 03. Faculty of Engineering; 04. Faculty of ScienceHemoglobin corresponds to O2 transportation from lungs to the tissues and exhibits high-spin to low-spin transition by binding of O2 to Fe. In this thesis, we study the electronic and magnetic properties of the deoxy and the oxy forms of the human adult hemoglobin (HbA) to investigate the mechanism of the spin transition. We use an effective multi-orbital Anderson model and the parameters of this model are determined by the density functional theory (DFT) calculations. Then, this model is solved by using a quantum Monte Carlo (QMC) algorithm. The DFT+QMC results show that new electronic states named as the impurity bound states (IBS) exist in both deoxy-HbA and oxy-HbA.We also observe that as the temperature decreases, a magnetic gap is opened at the Fermi level for oxy-HbA. This gap arises from the Fe-O2 charge transfer. We find that both the IBS and the opening of the magnetic gap are responsible for the spin transition in hemoglobin. In addition, the DFT+QMC calculations show that antiferromagnetic (AF) correlations between the Fe(3d) and the surrounding orbitals exist in both deoxy-HbA and oxy-HbA. For deoxy-HbA, the anomalous magnetic circular dichrosim signal in the UV region is experimental evidence for these AF correlations. In the light of these magnetic measurements, we propose some explanations for the Bohr effect and the cooperativity which are the fundemental functional properties of the hemoglobin. The results presented in this thesis show that the magnetic effects play a crucial role in the funtioning of the hemoglobin.Doctoral Thesis Processing Foam-Like Porous Glass Structure Using a Combined Process of Glass Powder Expansion in Aqueous Environment and Sintering Process(Izmir Institute of Technology, 2019) Zeren, Doğuş; Güden, Mustafa; Akdoğan, Yaşar; Güden, Mustafa; Akdoğan, Yaşar; 03.09. Department of Materials Science and Engineering; 03.10. Department of Mechanical Engineering; 03. Faculty of Engineering; 01. Izmir Institute of TechnologySoda-lime glass foams were formed by the controlled pore structure of inorganic particle-liquid suspensions at room temperature and then sintered at elevated temperatures between 650oC-800 oC. The slurries were prepared using the glass particles below 38 µm (fine), between 38 and 45 µm (medium) and between 45 and 56 µm (coarse) and with 50, 55, and 60 wt% solid content and 2, 3, and 4 wt% carboxymethyl cellulose (CMC) binder addition. The slurries were foamed using an Al-based foaming agent and a calcium hydroxide alkali activator with an amount of 1 wt%. An increase in CMC content and a decrease in particle size shifted the slurries from a Newtonian to a non-Newtonian behavior and slurry stabilization with the CMC addition. The extensively increased initial bubble pressure in high viscosity slurries resulted in higher linear expansion rate initially followed by a bursting of gas bubbles. The maximum foam linear expansion of the slurries increased with CMC addition until about ~5 Pa s and the expansions stayed almost constant over 400% expansion, while the slurries with the viscosity above 50 Pa s could not be foamed. The most effective factor on the maximum expansion was found the solid content followed by CMC content and the least effective factor was determined the particle size. Partial bonding of glass particles and excessive shrinkage of glass particles due to the melting of foam green bodies were seen at 650 and 800 oC sintering temperatures. Prepared foam glasses showed lower compressive strengths and thermal conductivities than the glass foams reported in the literature. Finally, foaming at room temperature with this technique was found to be more advantageous than conventional glass foam production techniques due to ease of pore formation controlling at room temperature.Doctoral Thesis The Fabrication of Plasmonic/Photonic Nanostructures in Polymers: Mechanical Sensor Applications(Izmir Institute of Technology, 2019) Topçu, Gökhan; Demir, Mustafa Muammer; Emirdağ Eanes, Mehtap; Demir, Mustafa Muammer; Eanes, Mehtap; 04.01. Department of Chemistry; 03.09. Department of Materials Science and Engineering; 03. Faculty of Engineering; 04. Faculty of Science; 01. Izmir Institute of TechnologyFunctional polymer nanocomposites offer futuristic properties by the association of inorganic additive micro-/nanostructures into the polymers. With the growing knowledge of the physical fundamentals, stimuli-responsive polymeric composites enable detection of chemical, thermal, and mechanical changes by optical sensors and probes. Since the accurate real-time detection of the change in mechanical loading is vital for construction and industrial fields, the use of colorimetric pressure elements in a static body is important for the prediction of catastrophic failures. In this thesis, strain/pressure responsive colorimetric films were produced. A number of polymer nanocomposite-based mechanical sensors are presented. By transferring the optical activity (coherent reflection and plasmonic coupling) of the additives into various polymeric matrices having different mechanical features, the strain and pressure sensors are developed for practical applications. There are two approaches used for the fabrication of polymeric mechanical sensors: i) PDMS/SiO2 composites, ii) PAAm/Au NP composites. The coherent reflectivity of SiO2 colloidal particle arrays was used to develop strain sensors while controllable localized surface plasmon resonance of Au NPs was employed for pressure sensors. These optical systems were separately associated with viscoelastic and elastic polymeric systems, and sensor properties were discussed.