Computer Engineering / Bilgisayar Mühendisliği
Permanent URI for this collectionhttps://hdl.handle.net/11147/10
Browse
2 results
Search Results
Conference Object A News Chain Evaluation Methodology Along With a Lattice-Based Approach for News Chain Construction(Association for Computational Linguistics (ACL), 2017) Toprak, Mustafa; Özkahraman,Ö.; Tekir, SelmaChain construction is an important requirement for understanding news and establishing the context. A news chain can be defined as a coherent set of articles that explains an event or a story. There's a lack of well-established methods in this area. In this work, we propose a methodology to evaluate the "goodness" of a given news chain and implement a concept latticebased news chain construction method by Hossain et al. The methodology part is vital as it directly affects the growth of research in this area. Our proposed methodology consists of collected news chains from different studies and two "goodness" metrics, minedge and dispersion coefficient respectively. We assess the utility of the lattice-based news chain construction method by our proposed methodology. © EMNLP 2017.All right reserved.Article Citation - WoS: 7Citation - Scopus: 5A Machine Learning Approach for Microrna Precursor Prediction in Retro-Transcribing Virus Genomes(Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.), 2016) Saçar Demirci, Müşerref Duygu; Toprak, Mustafa; Allmer, JensIdentification of microRNA (miRNA) precursors has seen increased efforts in recent years. The difficulty in experimental detection of pre-miRNAs increased the usage of computational approaches. Most of these approaches rely on machine learning especially classification. In order to achieve successful classification, many parameters need to be considered such as data quality, choice of classifier settings, and feature selection. For the latter one, we developed a distributed genetic algorithm on HTCondor to perform feature selection. Moreover, we employed two widely used classification algorithms libSVM and random forest with different settings to analyze the influence on the overall classification performance. In this study we analyzed 5 human retro virus genomes; Human endogenous retrovirus K113, Hepatitis B virus (strain ayw), Human T lymphotropic virus 1, Human T lymphotropic virus 2, Human immunodeficiency virus 2, and Human immunodeficiency virus 1. We then predicted pre-miRNAs by using the information from known virus and human pre-miRNAs. Our results indicate that these viruses produce novel unknown miRNA precursors which warrant further experimental validation.