Computer Engineering / Bilgisayar Mühendisliği
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Conference Object Enhancing genomic data sharing with blockchain-enabled dynamic consent in beacon V2(Springernature, 2024) Binokay, Leman; Celik, Hamit Mervan; Gurdal, Gultekin; Ayav, Tolga; Tuglular, Tugkan; Oktay, Yavuz; Karakulah, GokhanConference Object Citation - Scopus: 1Applying Weighted Graph Embeddings To Turkish Metaphor Detection(Institute of Electrical and Electronics Engineers Inc., 2024) İnan, EmrahMetaphor is a common literary mechanism that allows abstract concepts to be conceptualised using more concrete terminology. Existing methods rely on either end-to-end models or hand-crafted pre-processing steps. Generating well-defined training datasets for supervised models is a time-consuming operation for this type of problem. There is also a lack of pre-processing steps for resource-poor natural languages. In this study, we propose an approach for detecting Turkish metaphorical concepts. Initially, we collect non-literal concepts including their meaning and reference sentences by employing a Turkish dictionary. Secondly, we generate a graph by discovering super-sense relations between sample texts including target metaphorical expressions in Turkish WordNet. We also compute weights for relations based on the path closeness and word occurrences. Finally, we classify the texts by leveraging a weighted graph embedding model. The evaluation setup indicates that the proposed approach reaches the best F1 and Gmean scores of 0.83 and 0.68 for the generated test sets when we use feature vector representations of the Node2Vec model as the input of the logistic regression for detecting metaphors in Turkish texts. © 2024 IEEE.Conference Object A News Chain Evaluation Methodology Along With a Lattice-Based Approach for News Chain Construction(Association for Computational Linguistics (ACL), 2017) Toprak, Mustafa; Özkahraman,Ö.; Tekir, SelmaChain construction is an important requirement for understanding news and establishing the context. A news chain can be defined as a coherent set of articles that explains an event or a story. There's a lack of well-established methods in this area. In this work, we propose a methodology to evaluate the "goodness" of a given news chain and implement a concept latticebased news chain construction method by Hossain et al. The methodology part is vital as it directly affects the growth of research in this area. Our proposed methodology consists of collected news chains from different studies and two "goodness" metrics, minedge and dispersion coefficient respectively. We assess the utility of the lattice-based news chain construction method by our proposed methodology. © EMNLP 2017.All right reserved.Article Citation - Scopus: 3Development of Chrono-Spectral Gold Nanoparticle Growth Based Plasmonic Biosensor Platform(Elsevier, 2024) Sözmen, Alper Baran; Elveren, Beste; Erdoğan, Duygu; Mezgil, Bahadır; Baştanlar, Yalın; Yıldız, Ümit Hakan; Arslan Yıldız, AhuPlasmonic sensor platforms are designed for rapid, label-free, and real-time detection and they excel as the next generation biosensors. However, current methods such as Surface Plasmon Resonance require expertise and well-equipped laboratory facilities. Simpler methods such as Localized Surface Plasmon Resonance (LSPR) overcome those limitations, though they lack sensitivity. Hence, sensitivity enhancement plays a crucial role in the future of plasmonic sensor platforms. Herein, a refractive index (RI) sensitivity enhancement methodology is reported utilizing growth of gold nanoparticles (GNPs) on solid support and it is backed up with artificial neural network (ANN) analysis. Sensor platform fabrication was initiated with GNP immobilization onto solid support; immobilized GNPs were then used as seeds for chrono-spectral growth, which was carried out using NH2OH at varied incubation times. The response to RI change of the platform was investigated with varied concentrations of sucrose and ethanol. The detection of bacteria E.coli BL21 was carried out for validation as a model microorganism and results showed that detection was possible at 102 CFU/ml. The data acquired by spectrophotometric measurements were analyzed by ANN and bacteria classification with percentage error rates near 0% was achieved. The proposed LSPR-based, label-free sensor application proved that the developed methodology promises utile sensitivity enhancement potential for similar sensor platforms. © 2024 The Author(s)Conference Object Size Measurement and Effort Estimation in Microservicebased Projects: Results From Pakistan(CEUR-WS, 2023) Soylu, Görkem Kılınç; Ünlü, Hüseyin; Ahmad, Isra Shafique; Demirörs, OnurDuring the last decade, microservice-based software architecture has been a common design paradigm in the industry and has been successfully utilized by organizations. Microservice-based software architecture, specifically in the form of reactive systems, has substantial differences from the more conventional design paradigms, such as the object-oriented paradigm. The architecture moved away from being data-driven and evolved into a behavior-oriented structure. The usage of a single database is replaced by the structures in which each microservice is developed independently and has its own database. Therefore, adaptation demands software organizations to transform their culture. In this study, we aimed to get an insight into how Pakistani software organizations perform size measurement and effort estimation in their software projects which embrace the microservice-based software architecture paradigm. For this purpose, we surveyed 49 Pakistani participants from different agile organizations over different roles and domains to collect information on their experience in microservice-based projects. Our results reveal that although Pakistani organizations face challenges, they continue using familiar subjective size measurement and effort estimation approaches that they have used for traditional architectures. © 2023 Copyright for this paper by its authors.Article Citation - WoS: 1Citation - Scopus: 3Automatic Test Sequence Generation and Functional Coverage Measurement From Uml Sequence Diagrams(Igi Global, 2023) Ekici, Nazim Umut; Tuglular, TugkanSequence diagrams define functional requirements through use cases. However, their visual form limits their usability in the later stages of the development life cycle. This work proposes a method to transform sequence diagrams into graph-based event sequence graphs, allowing the application of graph analysis methods and defining graph-based coverage criteria. This work explores these newfound abilities in two directions. The first is to use coverage criteria along with existing tests to measure their coverage levels, providing a metric of how well they address the scenarios defined in sequence diagrams. The second is to use coverage criteria to automatically generate effective and efficient acceptance test cases based on the scenarios defined in sequence diagrams. The transformation method is validated with over eighty non-trivial projects. The complete method is validated through a non-trivial example. The results show that the test cases generated with the proposed method are more effective at exposing faults and more efficient in test input size than user-generated test cases.Article Endüstriyel Nesnelerin İnterneti Uygulamaları için Fpga Destekli ve Bağlam Tabanlı Erişim Kontrol Güvenlik Sistemi(2023) Ercan, Ahmet Tuncay; Genç, Didem; Tomur, EmrahEndüstri 4.0 ile birlikte üretimin her alanında gittikçe artan bilgisayar destekli sistemlerin yarattığı farklı ve karmaşık ağ topolojileri, artan veri miktarı, firmaların güvenlik ihtiyaçlarını artırmaktadır. Bundan dolayı farklı endüstriyel sektörlerde kullanılan farklı cihaz ve veri kullanımı şirketler, kendi kritik akıllı üretim sistemlerine yönelik güvenilir bir risk yönetim sistemine ihtiyaç duymaktadır. İşletmeler bu yüzden sahip oldukları Endüstriyel Kontrol ve Bilişim Sistemlerini korumayı amaçlarlar. Bu çalışmada üretim alanında kullanılabilecek, endüstriyel cihazlar ve/veya bunlara bağlı sensörlerin erişim kontrolü bağlamında güvenlik ihtiyaçlarını karşılayacak ve kenar bilişim kapsamında çalışacak FPGA (Alanda Programlanabilir Kapı Dizileri) destekli bir güvenlik platformu tasarlanmış ve çalışma yöntemi açıklanmıştır. Akıllı üretim cihazlarının bulunduğu bir imalathane ortamında çalışan cihaz, sensor, akıllı kontrol kutusu ve ağ geçidi gibi bileşenler üzerinde bağlam-tabanlı bir erişim denetim sistemi kullanımı gösterilmiş ve örnek bir çoklu kimlik doğrulama yöntemi tasarlanmıştır.Article Link Prediction for Completing Graphical Software Models Using Neural Networks(IEEE, 2023) Leblebici, Onur; Tuğlular, Tuğkan; Belli, FevziDeficiencies and inconsistencies introduced during the modeling of software systems may result in high costs and negatively impact the quality of all developments performed using these models. Therefore, developing more accurate models will aid software architects in developing software systems that match and exceed expectations. This paper proposes a graph neural network (GNN) method for predicting missing connections, or links, in graphical models, which are widely employed in modeling software systems. The proposed method utilizes graphs as allegedly incomplete, primitive graphical models of the system under consideration (SUC) as input and proposes links between its elements through the following steps: (i) transform the models into graph-structured data and extract features from the nodes, (ii) train the GNN model, and (iii) evaluate the performance of the trained model. Two GNN models based on SEAL and DeepLinker are evaluated using three performance metrics, namely cross-entropy loss, area under curve, and accuracy. Event sequence graphs (ESGs) are used as an example of applying the approach to an event-based behavioral modeling technique. Examining the results of experiments conducted on various datasets and variations of GNN reveals that missing connections between events in an ESG can be predicted even with relatively small datasets generated from ESG models. AuthorArticle Citation - WoS: 9Citation - Scopus: 13Microservice-Based Projects in Agile World: a Structured Interview(Elsevier, 2024) Unlu, Huseyin; Kennouche, Dhia Eddine; Soylu, Gorkem Kiling; Demirors, OnurContext: During the last decade, Microservice-based software architecture (MSSA) has been a preferred design paradigm for a growing number of companies. MSSA, specifically in the form of reactive systems, has substantial differences from the more conventional design paradigms, such as object-oriented analysis and design. Therefore, adaptation demands software organizations to transform their culture. However, there is a lack of research studies that explore common practices utilized by software companies that implement MSSAs.Objective: In this study, our goal is to get an insight into how practices such as an agile methodology, software analysis, design, test, size measurement, and effort estimation are performed in software projects which embrace the Microservice-based software architecture paradigm. Together with the identification of practices utilized for the MSSA paradigm, we aim to determine the challenges organizations face to adopt microservice-based software architectures.Method: We performed a structured interview with participants coming from 20 different organizations over different roles, domains, and countries to collect information on their views, experience, and the challenges faced.Results: Our results reveal that organizations find agile development compatible with microservices. In general, they continue to use traditional object-oriented modeling notations for analysis and design in an abstract way. They continue to use the same subjective size measurement and effort estimation approaches that they were using previously in traditional architectures. However, they face unique challenges in developing microservices.Conclusion: Although organizations face challenges, practitioners continue to use familiar techniques that they have been using for traditional architectures. The results provide a snapshot of the software industry that utilizes microservices.Article Citation - WoS: 1Citation - Scopus: 1How Software Practitioners Perceive Work-Related Barriers and Benefits Based on Their Educational Backgrounds: Insights From a Survey Study(IEEE, 2023) Ünlü, Hüseyin; Yürüm, Ozan Raşit; Özcan Top, Özden; Demirörs, OnurSurvey results show that software practitioners from nonsoftware-related backgrounds face more barriers, have fewer benefits, and feel less satisfied in their work life. However, these differences reduce with more than 10 years of experience and involvement in software-related graduate programs, certificates, and mentorship.