PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection
Permanent URI for this collectionhttps://hdl.handle.net/11147/7645
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Article Citation - WoS: 4Citation - Scopus: 2Elastic and Anelastic Behavior Associated With Structural Transitions in CsPbBr3(Amer Chemical Soc, 2025) Luo, Pingjing; He, Zhengwang; Yang, Dexin; Aktas, Oktay; Ding, Xiangdong; Zhang, XuefengStrain coupling and relaxation dynamics critically influence the photovoltaic and photoluminescent performances of metal halide perovskites. Here, resonant ultrasound spectroscopy is employed to study the elastic and anelastic properties associated with the octahedral tilting transitions in the optoelectronic semiconductor CsPbBr3 over the temperature range 303-468 K. The cubic-to-tetragonal transition near 405 K is marked by pronounced elastic softening accompanied by a sharp increase in acoustic loss. High anelastic loss below this transition reveals the presence of mobile ferroelastic twin walls that become pinned by lead vacancies at a temperature interval near 380 K in the tetragonal phase. The elastic softening in the cubic phase is strongly correlated to dynamic effects such as the local polar fluctuations. This local disordered effect is further verified by the anomalously high attenuation in the orthorhombic structure, in which the ferroelastic twin walls might become mobile.Article Citation - WoS: 4Citation - Scopus: 4Sulfonated Cellulose: a Strategy for Effective Methylene Blue Sequestration(Amer Chemical Soc, 2025) Toy, Mustafa; Recepoglu, Yasar Kemal; Arar, OzgurThis study investigates the sulfonation modification of cellulose for the removal of methylene blue (MB) from aqueous solutions. The prepared biosorbent was characterized, and its sorption capacity, kinetics, and thermodynamics were systematically evaluated. Fourier-transform infrared (FTIR) spectroscopy analyzed structural modifications, while scanning electron microscopy (SEM) examined the surface properties. The optimal sorbent dosage was determined as 0.05 g. MB removal efficiency increased from 11% at pH 1 to 70% at pH 2, reaching 99% within the pH range of 3 to 7. Kinetic studies revealed rapid sorption, achieving 99% removal within 3 min. Among various isotherm models, the Langmuir model provided the best fit (R 2 = 0.9989), indicating monolayer sorption with a maximum capacity of 37.65 mg/g. Thermodynamic analysis showed negative Delta G degrees values, confirming a spontaneous sorption process, while an enthalpy change (Delta H degrees) of -33.5 kJ/mol indicated exothermic behavior. The entropy change (Delta S degrees) of -82.6 J mol-1<middle dot>K-1 suggested decreased disorder during sorption. Regeneration studies demonstrated that 0.2 M HCl combined with ethanol achieved the highest desorption efficiency, and after three cycles, the MB removal efficiency remained above 99%. The presence of -SO3 - groups played a crucial role in MB sorption via ion exchange and may also contribute through hydrogen bonding, thereby enhancing MB sorption. These findings highlight sulfonated cellulose as an efficient and regenerable biosorbent for MB removal, offering valuable insights into its sorption mechanisms.Article Citation - WoS: 7Citation - Scopus: 7Periodate-Mediated Cross-Linking for the Preparation of Catechol Conjugated Albumin Nanoparticles Used for in Vitro Drug Delivery(Amer Chemical Soc, 2025) Argitekin, Eda; Erez, Ozlem; Cakan-Akdogan, Gulcin; Akdogan, YasarConjugation of serum albumin protein with catechol-containing dopamine molecules provides an alternative method for the preparation of albumin nanoparticles (NPs). A commonly used desolvation method utilizes glutaraldehyde as a cross-linking agent. Here, the catechol cross-linking mechanism is used instead of glutaraldehyde providing advantages to prevent toxicity and an undesirable reaction of glutaraldehyde with cargo molecules. Covalent cross-linking between dopamine conjugated bovine serum albumin (D-BSA) proteins was obtained in the presence of sodium periodate (NaIO4) as an oxidizer. As a result, spherical D-BSA NPs with a uniform size distribution of around 100 nm in diameter and negative zeta potential around -28 mV were prepared. Optimal conditions were reached when a dopamine:IO4 - molar ratio of 2:1, pH 7.4 of the medium, and acetone as the desolvating agent were used. Furthermore, the obtained NPs display antioxidant properties, have rapid biodegradability in the presence of trypsin, and have a high doxorubicin (DOX) loading (9.1%) with a sustainable drug release. DOX loaded D-BSA NPs also caused up to 90% breast cancer cell (MCF-7) death within 24 h. These results show that drug carrying albumin NPs can alternatively be prepared via covalently cross-linked catechol groups and used in drug delivery studies.Article Radially Aligned Carbon Nanotube Glass Fiber Composites as Ion-Selective Microelectrodes(Amer Chemical Soc, 2025) Onder, Ahmet; Ng, Zhi Kai; Tsang, Siu Hon; Alagappan, Palaniappan; Teo, Edwin Hang Tong; Yildiz, Umit HakanDetection of ions is challenging due to their small size, rapid diffusion, and high mobility, especially for assaying in samples of low volumes. Among the traditional analytical methods, potentiometric ion-selective electrodes (ISE) have become a popular choice for detecting ions as they are cost-effective, user-friendly and can be miniaturized, making them useful for on-site analysis. In this context, radially aligned carbon nanotubes (RACNT) directly grown on glass fibers (GF) via the chemical vapor deposition method is investigated as a solid contact material for the fabrication of ion-selective microelectrodes (mu ISE) upon incorporating specific ionophores within a polymeric encapsulation membrane. As an illustration, sensitive detection of ammonium ions is accomplished by the fabricated mu ISE (plasticized PVC membrane containing nonactin ionophores), which yielded a LOD and a linear response range between 7.5 x 10-6 and 1.0 x 10-5 to 1.0 x 10-1 M, respectively. The mu ISE fabricated with RACNT-GF as an interface material exhibited improvements in LOD and enhanced the detection selectivity as compared to a conventional ISE fabricated using planar solid contact materials such as graphite. We hypothesize that the fabricated mu ISE with a high surface area and mechanical durability maximize the accommodation of ionophores in the barrier membrane for yielding improved potentiometric responses. Experimental results illustrate that the mu ISE possesses the potential to be utilized for the fabrication of selective and sensitive ISE upon incorporation of specific ionophores with RACNT-GF composites.Article Citation - WoS: 22Citation - Scopus: 12Polarization Dynamics of Solid-State Quantum Emitters(Amer Chemical Soc, 2024) Kumar, Anand; Samaner, Caglar; Cholsuk, Chanaprom; Matthes, Tjorben; Pacal, Serkan; Oyun, Yagiz; Vogl, TobiasQuantum emitters in solid-state crystals have recently attracted a great deal of attention due to their simple applicability in optical quantum technologies. The polarization of single photons generated by quantum emitters is one of the key parameters that plays a crucial role in various applications, such as quantum computation, which uses the indistinguishability of photons. However, the degree of single-photon polarization is typically quantified using the time-averaged photoluminescence intensity of single emitters, which provides limited information about the dipole properties in solids. In this work, we use single defects in hexagonal boron nitride and nanodiamond as efficient room-temperature single-photon sources to reveal the origin and temporal evolution of the dipole orientation in solid-state quantum emitters. The angles of the excitation and emission dipoles relative to the crystal axes were determined experimentally and then calculated using density functional theory, which resulted in characteristic angles for every specific defect that can be used as an efficient tool for defect identification and understanding their atomic structure. Moreover, the temporal polarization dynamics revealed a strongly modified linear polarization visibility that depends on the excited-state decay time of the individual excitation. This effect can potentially be traced back to the excitation of excess charges in the local crystal environment. Understanding such hidden time-dependent mechanisms can further improve the performance of polarization-sensitive experiments, particularly that for quantum communication with single-photon emitters.Article Citation - WoS: 10Citation - Scopus: 9Exploring Neuronal Differentiation Profiles in Sh-Sy5y Cells Through Magnetic Levitation Analysis(Amer Chemical Soc, 2024) Kartal, Rumeysa Bilginer; Yildiz, Ahu ArslanMagnetic levitation (MagLev) is a powerful and versatile technique that can sort objects based on their density differences. This paper reports the sorting of SH-SY5Y cells for neuronal differentiation by the MagLev technique. Herein, SH-SY5Y cells were differentiated with retinoic acid (RA) and brain-derived neurotrophic factor (BDNF). Neuronal differentiation was confirmed by neurite extension measurement and the immunostaining assay. Neurites reached the maximum length on day 9 after sequential treatment with RA-BDNF. Neuronal marker expression of un-/differentiated cells was investigated by beta-III tubulin and neuronal nuclei (NeuN) and differentiated cells exhibited a higher fluorescence intensity compared to un-/differentiated cells. MagLev results revealed that the density of differentiated SH-SY5Y cells gradually increased from 1.04 to 1.06 g/mL, while it remained stable at 1.05 g/mL for un-/differentiated cells. These findings signified that cell density would be a potent indicator of neuronal differentiation. Overall, it was shown that MagLev methodology can provide rapid, label-free, and easy sorting to analyze the differentiation of cells at a single-cell level.Article Citation - WoS: 17Citation - Scopus: 18Utilizing Magnetic Levitation To Detect Lung Cancer-Associated Exosomes(Amer Chemical Soc, 2024) Sozmen, Alper Baran; Arslan-Yildiz, AhuExtracellular vesicles, especially exosomes, have attracted attention in the last few decades as novel cancer biomarkers. Exosomal membrane proteins provide easy-to-reach targets and can be utilized as information sources of their parent cells. In this study, a MagLev-based, highly sensitive, and versatile biosensor platform for detecting minor differences in the density of suspended objects is proposed for exosome detection. The developed platform utilizes antibody-functionalized microspheres to capture exosomal membrane proteins (ExoMPs) EpCAM, CD81, and CD151 as markers for cancerous exosomes, exosomes, and non-small cell lung cancer (NSCLC)-derived exosomes, respectively. Initially, the platform was utilized for protein detection and quantification by targeting solubilized ExoMPs, and a dynamic range of 1-100 nM, with LoD values of 1.324, 0.638, and 0.722 nM for EpCAM, CD81, and CD151, were observed, respectively. Then, the sensor platform was tested using exosome isolates derived from NSCLC cell line A549 and MRC5 healthy lung fibroblast cell line. It was shown that the sensor platform is able to detect and differentiate exosomal biomarkers derived from cancerous and non-cancerous cell lines. Overall, this innovative, simple, and rapid method shows great potential for the early diagnosis of lung cancer through exosomal biomarker detection.Article Citation - WoS: 7Citation - Scopus: 6Thickness Gradient in Polymer Coating by Reactive Layer-By Assembly on Solid Substrate(Amer Chemical Soc, 2023) Özenler, Sezer; Alkan, Ali Ata; Gunay, Ufuk Saim; Dağlar, Özgün; Durmaz, Hakan; Yıldız, Ümit HakanThe study describes a simple yet robust methodology for forming gradients in polymer coatings with nanometer-thickness precision. The thickness gradients of 0-20 nm in the coating are obtained by a reactive layer-by-layer assembly of polyester and polyethylenimine on gold substrates. Three parameters are important in forming thickness gradients: (i) the incubation time, (ii) the incubation concentration of the polymer solutions, and (iii) the tilt angle of the gold substrate during the dipping process. After examining these parameters, the characterization of the anisotropic surface obtained under the best conditions is presented in the manuscript. The thickness profile and nanomechanical characterization of the polymer gradients are characterized by atomic force microscopy. The roughness analysis has demonstrated that the coating exhibited decreasing roughness with increasing thickness. On the other hand, Young's moduli of the thin and thick coatings are 0.50 and 1.4 MPa, respectively, which assured an increase in mechanical stability with increasing coating thickness. Angle-dependent infrared spectroscopy reveals that the C-O-C ester groups of the polyesters exhibit a perpendicular orientation to the surface, while the C=C groups are parallel to the surface. The surface properties of the polymer gradients are explored by fluorescence microscopy, proving that the dye's fluorescence intensity increases as the coating thickness increases. The significant benefit of the suggested methodology is that it promises thickness control of gradients in the coating as a consequence of the fast reaction kinetics between layers and the reaction time.Article Citation - WoS: 26Citation - Scopus: 27Dopamine-Conjugated Bovine Serum Albumin Nanoparticles Containing Ph-Responsive Catechol-V(iii) Coordination for in Vitro and in Vivo Drug Delivery(Amer Chemical Soc, 2023) Argıtekin, Eda; Ersöz-Gülseven, Esra; Çakan-Akdoğan, Gülçin; Akdoğan, YaşarV(III) instead of commonly used Fe(III) provided a richtris-catechol-metalcoordination at pH 7.4, which is important for slow drug release atphysiological pH. Bovine serum albumin (BSA) functionalized with catechol-containingdopamine (D) and cross-linked using tris-catechol-V(III) coordinationyielded pH-responsive compact D-BSA NPs (253 nm). However, conversionto bis- and/or mono-catechol-V(III) complexes in an acidic mediumresulted in degradation of NPs and rapid release of doxorubicin (DOX).It was shown that D-BSA NPs entered cancerous MCF-7 cells (66%) moreefficiently than non-cancerous HEK293T (33%) in 3 h. Also, DOX-loadedNPs reduced cell viability of MCF-7 by 75% and induced apoptosis ina majority of cells after 24 h. Biodegradability and lack of hemolyticactivity were shown in vitro, whereas a lack of toxicity was shownin histological sections of zebrafish. Furthermore, 30% of circulatingtumor cells in vasculature in 24 h were killed by DOX-loaded NPs shownwith the zebrafish CTC xenograft model.Article Citation - WoS: 3Citation - Scopus: 6Halogenated By-Products in Chlorinated Indoor Swimming Pools: a Long-Term Monitoring and Empirical Modeling Study(Amer Chemical Soc, 2023) Genişoğlu, Mesut; Minaz, Mert; Tanacan, Ertaç; Sofuoğlu, Sait Cemil; Kaplan-Bekaroğlu, Şehnaz Şule; Kanan, Amer; Ateş, NurayMonitoring the disinfection process and swimming pool water quality is essential for the prevention of microbial infections and associated diseases. However, carcinogenic and chronic-toxic disinfection by-products (DBPs) are formed with reactions between disinfectants and organic/inorganic matters. DBP precursors in swimming pools originate from anthropogenic sources (body secretions, personal care products, pharmaceuticals, etc.) or chemicals used in pools. Temporal (48 weeks) water quality trends of trihalomethanes (THMs), haloacetic acids (HAAs), haloacetonitriles (HANs), and halonitromethanes (HNMs) in two swimming pools (SP-A and SP-B) and precursor-DBP relationships were investigated in this study. Weekly samples were taken from swimming pools, and several physical/chemical water quality parameters, absorbable organic halides (AOX), and DBPs were determined. THMs and HAAs were the most detected DBP groups in pool water. While chloroform was determined to be the dominant THM compound, dichloroacetic acid and trichloroacetic acid were the dominant HAA compounds. The average AOX concentrations were measured to be 304 and 746 mu g/L as Cl- in SP-A and SP-B, respectively. Although the amount of AOX from unknown chlorinated by-products in SP-A did not vary temporally, a significant increase in unknown DBP concentrations in SP-B was observed over time. AOX concentrations of chlorinated pool waters were determined to be an important parameter that can be used to estimate DBP concentrations.