Photonics / Fotonik
Permanent URI for this collectionhttps://hdl.handle.net/11147/2590
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Article Citation - WoS: 1Citation - Scopus: 1Calcium Indicators With Fluorescence Lifetime-Based Signal Readout: a Structure-Function Study(MDPI, 2024) Simonyan, Tatiana R.; Varfolomeeva, Larisa A.; Mamontova, Anastasia V.; Kotlobay, Alexey A.; Gorokhovatsky, Andrey Y.; Bogdanov, Alexey M.; Boyko, Konstantin M.The calcium cation is a crucial signaling molecule involved in numerous cellular pathways. Beyond its role as a messenger or modulator in intracellular cascades, calcium's function in excitable cells, including nerve impulse transmission, is remarkable. The central role of calcium in nervous activity has driven the rapid development of fluorescent techniques for monitoring this cation in living cells. Specifically, genetically encoded calcium indicators (GECIs) are the most in-demand molecular tools in their class. In this work, we address two issues of calcium imaging by designing indicators based on the successful GCaMP6 backbone and the fluorescent protein BrUSLEE. The first indicator variant (GCaMP6s-BrUS), with a reduced, calcium-insensitive fluorescence lifetime, has potential in monitoring calcium dynamics with a high temporal resolution in combination with advanced microscopy techniques, such as light beads microscopy, where the fluorescence lifetime limits acquisition speed. Conversely, the second variant (GCaMP6s-BrUS-145), with a flexible, calcium-sensitive fluorescence lifetime, is relevant for static measurements, particularly for determining absolute calcium concentration values using fluorescence lifetime imaging microscopy (FLIM). To identify the structural determinants of calcium sensitivity in these indicator variants, we determine their spatial structures. A comparative structural analysis allowed the optimization of the GCaMP6s-BrUS construct, resulting in an indicator variant combining calcium-sensitive behavior in the time domain and enhanced molecular brightness. Our data may serve as a starting point for further engineering efforts towards improved GECI variants with fine-tuned fluorescence lifetimes.Article Citation - WoS: 8Citation - Scopus: 9Tuning the Colour of Solution Processed Perylene Tetraester Based Oleds From Yellowish-Green To Greenish-White: a Molecular Engineering Approach(Elsevier, 2023) Aksoy, Erkan; Bozkuş, Volkan; Varlıklı, CananThree regioisomericaly pure 1,7-di-ethynyl bridged perylene-3,4,9,10-tetracarboxy tetrabutylesters functionalized with triisopropylsilyl-ethynylen (PTE1), phenyl-ethynylen (PTE2) and tetraphenylsilyl-ethynylen (PTE3) groups were synthesized. Photophysical, thermal, electrochemical, and solution processed electroluminescence (EL) behaviours were investigated in comparison with a basic perylene-3,4,9,10-tetracarboxy tetrabutylester (PTEref) structure. Stepwise π conjugation, allowed tuning the absorption and photoluminescence wavelengths of the PTEs without disturbing the photo, thermal and electrochemical stabilities; ≫10h, >250 °C, and >50 cycles, respectively. Electron mobility of PTE2 is measured to be more than 10-fold of the other PTE derivatives. Individual utilization of PTE derivatives as solid-state emitters in poly(N-vinylcarbazole) (PVK): 2-(4-Biphenylyl)-5-phenyl-1,3,4-oxadiazole (PBD) host matrix produced yellowish-green EL. Benefiting from higher electron mobiliy, PTE2 emitter presented the best device efficiency values with an EL maximum of 535 nm. Whereas dual doping of the synthesized PTEs with PTEref resulted in greenish-white light with increased stability. Although the emitting layer contained no red emitting component, optimization of the dual doping ratio of PTEref:PTE3 produced a colour rendering index value of 76 with Commission Internationale d'Eclairage coordinates of (0.29, 0.37).Article Citation - WoS: 2Citation - Scopus: 5Experimental Modeling of Antimony Sulfides-Rich Geothermal Deposits and Their Solubility in the Presence of Polymeric Antiscalants(Elsevier, 2022) Karaburun, Emre; Sözen, Yiğit; Çiftçi, Celal; Şahin, Hasan; Baba, Alper; Akbey, Ümit; Yeşilnacar, Mehmet İrfan; Erdim, Eray; Regenspurg, Simona; Demir, Mustafa MuammerAntimony (Sb)-rich geothermal deposits have been observed in many geothermal power plants worldwide. They occur as red-colored, sulfidic precipitates disturbing energy-harvesting by clogging the geothermal installations. In order to prevent the formation of this scale, information on its physicochemical features is needed. For this purpose, Sb-rich sulfide-based deposits were synthesized at controlled conditions in a pressurized glass reactor at geothermal conditions (135 °C and 3.5 bar). Various polymeric antiscalants with different functional groups, such as acrylic acid, sulphonic acid, and phosphonic acid groups were tested for their effect on Sb sulfide solubility. An additional computational study was performed to determine the binding energy of Sb and S atoms to these groups. The results suggest that sulfonic acid groups are the most affective. Therefore, it was concluded that these macromolecule containing sulfonic acid groups and poly (vinyl sulfonic acid) derivatives could potentially act as antiscalants for the formation of antimony sulfide.Article Citation - WoS: 30Citation - Scopus: 32Perylene-Embedded Electrospun Ps Fibers for White Light Generation(Elsevier Ltd., 2019) Güner, Tuğrul; Aksoy, Erkan; Demir, Mustafa Muammer; Varlıklı, CananPerylene dyes have been employed in the fabrication of white light due to their superior photophysical properties and relatively easy synthetic methods. However, their molecular aggregation in solid state is one of the main handicaps since it causes deviation in their optical properties and quenches photoluminescence quantum yields (Phi(f)). Investigation of the photophysical properties of a green (PTE), a yellow (PDI) and a new red (DiPhAPDI) emitting perylene derivative in solution, drop-casted films, polystyrene (PS) fibers and PS fibers embedded in poly (dimethyl siloxane) (PDMS) showed that PS:dye fibers prevent aggregation to some extend and allows high Of of dyes. The Of values of PTE, PDI and DiPhAPDI were all higher than 93.0% in solution and 84.8%, 94.3% and 73.6%, respectively in PS:dye fibers. Embedding the fibers in PDMS improved the photostabilities of the dyes two folds compared to their solution phases. The prepared dye containing fibers were combined together into a single PDMS film and utilized as a frequency conversion layer on a blue LED. Fabricated samples were found to show high color rendering index (>= 90), adjustable CCT (7500 K-5000 K), and power efficiency values exceeding 2001m/W depending on the used fiber amount in mass.Article Citation - WoS: 7Citation - Scopus: 7Synthesis, Photophysical and Electrochemical Properties of Novel Carbazole-Triazine Based High Triplet Energy, Solution-Processable Materials(Elsevier, 2018) Öner, Saliha; Aydemir, Murat; Yeşil, Fatih; Şahin, Çiğdem; Varlıklı, CananA series of molecules; tBuCz1SiTrz, tBuCz2SiTrz and tBuCz3SiTrz, which contain carbazole unit as hole-transporting group (donor-D) and triazine unit as electron transporting group (acceptor-A) were synthesized and characterized as high-triplet energy (>2.9 eV), solution-processable bipolar emitting materials. The conjugation between the D-A groups was interrupted by using bulky tetraphenylsilane groups as spacer aiming to obtain large bandgap and high-triplet energy. The photophysical behaviors of the molecules were investigated by UV-Vis absorption, photoluminescence, phosphorescence, photoluminescence quantum yield and lifetime measurements. Solvent polarity effects were investigated on the intramolecular charge transfer (ICT) behaviour and large solvatochromic effect was observed with the increasing solvent polarity. Electrochemical properties were determined by cyclic voltammetry. All molecules showed oxidation bands arise from the carbazole groups. Reduction bands were originated from the triazine groups and the intramolecular charge transfer between D-A groups. Photophysical, electrochemical and computational characterizations addressed that tBuCz2SiTrz has the weakest ICT character, highest photoluminescence quantum yield (PLQY) and charge balance.Article Citation - WoS: 21Citation - Scopus: 27Increasing Solubility of Metal Silicates by Mixed Polymeric Antiscalants(Elsevier Ltd., 2019) Topçu, Gökhan; Çelik, Aslı; Kandemir, Ali; Baba, Alper; Şahin, Hasan; Demir, Mustafa MuammerThe increase of silicate solubility is a big challenge for both hot and cold water because it reduces the deposition of metal silicates frequently observed in such systems and causes operational obstacles. The deposition of silicate coats the inner surface of the pipelines in an uncontrolled manner and reduces the harvesting of energy from brines. In this work, the solubility performance of two commercial water-soluble polymeric agents (poly(ethylene glycol) (PEG) and poly(vinyl alcohol) (PVA)) of various molecular weights employing dosage from 25 to 100 mg/L was examined. Along with dispersant-type antiscalant, poly(acrylamide) (PAM), poly(vinylsulfonic acid, sodium salt) (PVSA), and poly(vinylphosphonic acid) (PVPA) having chelating acidic groups were employed. Metal silicate deposits were obtained artificially in the lab-scale pressurized reactor. The experimental conditions employed were quite similar to a model power plant located in Çanakkale, Turkey. The concentration of dissolved silica was increased from 130 to 420 mg/L when 100 mg/L PEG 1500 and 25 mg/L PVSA were employed as a mixture. For the atomic-level understanding of the interaction of chelating groups with metal cations, DFT calculations were performed too.Article Citation - WoS: 19Citation - Scopus: 21Fundamental Mechanisms Responsible for the Temperature Coefficient of Resonant Frequency in Microwave Dielectric Ceramics(John Wiley and Sons Inc., 2017) Zhang, Shengke; Şahin, Hasan; Torun, Engin; Peeters, François M.; Martien, Dinesh; DaPron, Tyler; Dilley, Neil; Newman, NathanThe temperature coefficient of resonant frequency (τf) of a microwave resonator is determined by three materials parameters according to the following equation: τf=−(½ τε + ½ τμ + αL), where αL, τε, and τμ are defined as the linear temperature coefficients of the lattice constant, dielectric constant, and magnetic permeability, respectively. We have experimentally determined each of these parameters for Ba(Zn1/3Ta2/3)O3, 0.8 at.% Ni-doped Ba(Zn1/3Ta2/3)O3, and Ba(Ni1/3Ta2/3)O3 ceramics. These results, in combination with density functional theory calculations, have allowed us to develop a much improved understanding of the fundamental physical mechanisms responsible for the temperature coefficient of resonant frequency, τf.