Tek, Neslihan
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Tek Eken, Neslihan
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neslihantek@iyte.edu.tr
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04.03. Department of Molecular Biology and Genetics
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Former Staff
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Sustainable Development Goals
1NO POVERTY
0
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2ZERO HUNGER
2
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3GOOD HEALTH AND WELL-BEING
1
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4QUALITY EDUCATION
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5GENDER EQUALITY
0
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6CLEAN WATER AND SANITATION
1
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7AFFORDABLE AND CLEAN ENERGY
1
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8DECENT WORK AND ECONOMIC GROWTH
0
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9INDUSTRY, INNOVATION AND INFRASTRUCTURE
2
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10REDUCED INEQUALITIES
0
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11SUSTAINABLE CITIES AND COMMUNITIES
0
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12RESPONSIBLE CONSUMPTION AND PRODUCTION
1
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13CLIMATE ACTION
1
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14LIFE BELOW WATER
1
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15LIFE ON LAND
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16PEACE, JUSTICE AND STRONG INSTITUTIONS
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17PARTNERSHIPS FOR THE GOALS
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Documents
2
Citations
28
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2
Documents
2
Citations
25
Scholarly Output
8
Articles
6
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9062/12957
Supervised MSc Theses
1
Supervised PhD Theses
0
WoS Citation Count
86
Scopus Citation Count
103
Patents
0
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0
WoS Citations per Publication
10.75
Scopus Citations per Publication
12.88
Open Access Source
7
Supervised Theses
1
| Journal | Count |
|---|---|
| Journal of Liquid Chromatography and Related Technologies | 2 |
| Plant Science | 2 |
| Bio-Protocol | 1 |
| Functional & Integrative Genomics | 1 |
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8 results
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Now showing 1 - 8 of 8
Article Citation - WoS: 23Citation - Scopus: 26Development of Practical Hplc Methods for the Separation and Determination of Eggplant Steroidal Glycoalkaloids and Their Aglycones(Taylor and Francis Ltd., 2008) Eanes, Ritchie C.; Tek, Neslihan; Kırsoy, Öyküm; Frary, Anne; Doğanlar, Sami; Almeida, Adelia E.A practical set of HPLC methods was developed for the separation and determination of the eggplant steroidal glycoalkaloids, solanine, chaconine, solasonine, solamargine, and their aglycones, solasodine and solanidine. A gradient method was initially developed, but proved to be neither robust nor practical. Three separate isocratic methods using acetonitrile and ammonium dihydrogen phosphate were developed and shown to be more repeatable, less subject to fluctuations in mobile phase composition, and less time consuming. The effect of adjusting buffer pH, column temperature, and buffer type (triethylammonium phosphate vs. ammonium dihydrogen phosphate) were evaluated. It was also discovered that, by addition of 10% methanol to the acetonitrile portion of the mobile phase, more control over the separations was possible. The use of methanol as a mobile phase entrainer greatly improved separations in some cases and its effectiveness was also dependent upon column temperature. Assessments of the method recovery, limit of detection, and limit of quantitation were made using extracts from S. melongena and S. linnaeanum.Article Citation - WoS: 18Citation - Scopus: 21Exploring Wild Alleles From Solanum Pimpinellifolium With the Potential To Improve Tomato Flavor Compounds(Elsevier, 2020) Gürbüz Çolak, Nergiz; Tek, Neslihan; Ülger, Mehmet; Frary, Anne; Doğanlar, SamiMost consumers complain about the flavor of current tomato cultivars and many pay a premium for alternatives such as heirloom varieties. Breeding for fruit flavor is difficult because it is a quantitatively inherited trait influenced by taste, aroma and environmental factors. A lack of genetic diversity in modern tomato cultivars also necessitates exploration of new sources for flavor alleles. Wild tomato S. pimpinellifolium and inbred backcross lines were assessed for individual sugars and organic acids which are two of the main components of tomato flavor. S. pimpinellifolium was found to harbor alleles that could be used to increase glucose and fructose content and adjust acidity by altering malic and citric acid levels. Single nucleotide polymorphism markers were used to detect 14 quantitative trait loci (QTLs) for sugars and 71 for organic acids. Confirmation was provided by comparing map locations with previously identified loci. Thus, seven (50 %) of the sugar QTLs and 22 (31 %) of the organic acids loci were supported by analyses in other tomato populations. Examination of the genomic sequence containing the QTLs allowed identification of potential candidate genes for several flavor components. © 2020 Elsevier B.V.Master Thesis Chromatographic Determination of Glycoalkaloids in Eggplant(Izmir Institute of Technology, 2006) Tek, Neslihan; Tek, Neslihan; Eanes, Ritchie C.Novel modifications were applied to high-performance liquid chromatography (HPLC) and gas chromatography-mass spectrometry (GC-MS) for the separation and quantitation of the steroidal glycoalkaloids (SGAs) solanine, chaconine, solamargine, and solasonine as well as the steroidal glycoalkaloid aglycones (SGAAs) solasodine and solanidine. Because attempts to develop a gradient elution HPLC method were only marginally successfully and non-robust, it was deemed more practical to develop separate HPLC methods for either the SGAs or SGAAs of interest. Furthermore, a novel approach using methanol as a mobile phase modifier was still required to successfully separate solamargine and chaconine. Comparing potential mobile phase buffers, ammonium dihydrogen phosphate was chosen as the most efficient, stable, and economical. Separations were best realized isocratically at a column temperature of 50 °C for the SGAs and either 26 °C or 50 °C for the SGAAs. Progesterone was applied as an internal standard. Effects of pH were also tested. Figures of merit such as limit of detection (LOD), limit of quantitation (LOQ), and linear dynamic range are described herein. Lastly, solid-phase microextraction (SPME) using on-fiber derivatization coupled with GC-MS was investigated for extraction and analysis of these SGAAs. A carbowax divinylbenzene (CW-DVB) coated SPME fiber was the most suitable. Solanidine could be extracted and identified directly using our SPME/GC-MS method while solasodine required a derivatization step involving trimethylsilylimidazole (TMSI). Although initial attempts were qualitatively reproducible, eventual degradation to fibers precluded complete study. Cholesterol as an internal standard was investigated.Article Citation - WoS: 36Citation - Scopus: 47Mapping of Quantitative Trait Loci for Antioxidant Molecules in Tomato Fruit: Carotenoids, Vitamins C and E, Glutathione and Phenolic Acids(Elsevier, 2020) Gürbüz Çolak, Nergiz; Tek, Neslihan; Ülger, Mehmet; Frary, Anne; Doğanlar, SamiThe nutritional value of a crop lies not only in its protein, lipid, and sugar content but also involves compounds such as the antioxidants lycopene, beta-carotene and vitamin C. In the present study, wild tomato Solanum pimpinellifolium LA 1589 was assessed for its potential to improve antioxidant content. This wild species was found to be a good source of alleles for increasing beta-carotene, lycopene, vitamin C and vitamin E contents in cultivated tomato. Characterization of an LA 1589 interspecific inbred backcross line (IBL) mapping population revealed many individuals with transgressive segregation for the antioxidants confirming the usefulness of this wild species for breeding of these traits. Molecular markers were used to identify QTLs for the metabolites in the IBL population. In total, 64 QTLs were identified for the antioxidants and their locations were compared to the map positions of previously identified QTLs for confirmation. Four (57 %) of the carotenoid QTLs, four (36 %) of the vitamin QTLs, and 11 (25 %) of the phenolic acid QTLs were supported by previous studies. Furthermore, several potential candidate genes were identified for vitamins C and E and phenolic acids loci. These candidate genes might be used as markers in breeding programs to increase tomato's antioxidant content.Article Citation - WoS: 3Citation - Scopus: 3Chromatographic Analysis for Targeted Metabolomics of Antioxidant and Flavor-Related Metabolites in Tomato(Bio-Protocol, 2021) Gürbüz Çolak, Nergiz; Tek, Neslihan; Frary, Anne; Doğanlar, SamiTargeted metabolomics is a useful approach to evaluate crop breeding studies. Antioxidant and flavor-related traits are of increasing interest and are considered quality traits in tomato breeding. The present study presents chromatographic methods to study antioxidants (carotenoids, vitamin C, vitamin E, phenolic compounds, and glutathione) and flavor -related characters (sugars and organic acids) in tomato. Two different extraction methods (for polar and apolar entities) were applied to isolate the targeted compounds. The extraction methods developed in this work were time and cost-effective since no further purification was needed. Carotenoids, vitamin C, glutathione, and phenolic acids were analyzed by HPLC-PDA using a RP C18 column at an appropriate wavelength for each compound. Vitamin E and sugars were analyzed by HPLC with RP C18 and NH2 columns and detected by FLD and RI detectors, respectively. In addition, organic acids were analyzed with GC-FID using a Rtx 5DA column after derivatization with MSTFA. As a result, sensitive analytical methods to quantify important plant metabolites were developed and are described herein. These methods are not only applicable in tomato but are also useful to characterize other species for flavor-related and antioxidant compounds. Thus, these protocols can be used to guide selection in crop breeding.Project Deliverable Patlıcanda glycoalkaloid analizi için metot geliştirilmesi(TÜBİTAK - Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, 2007) Eanes, Ritchie C.; Parlayan, Filiz; Tek, Neslihan; Akgül, Yurdanur[No Abstract Available]Article Citation - WoS: 2Citation - Scopus: 2Solid-Phase Microextraction (spme) Followed by On-Fiber Derivatization of Solasodine and Solanidine Aglycones of Steroidal Glycoalkaloids(Taylor and Francis Ltd., 2008) Eanes, Ritchie C.; Tek, NeslihanSolid-phase microextraction (SPME), followed by on-fiber derivatization was investigated for the analysis of the steroidal glycoalkaloid aglycones, solasodine and solanidine. The aglycones were first extracted by direct immersion of the SPME fiber in the sample medium and then derivatized on the fiber in a separate step using 1-(trimethylsilyl)imidazole (TMSI). The derivatized compounds were then desorbed from the SPME fiber and detected by GC-MS. Polydimethylsiloxane/Divinylbenzene (PDMS-DVB), Carboxen/ Polydimethylsiloxane (CAR-PDMS), and Carbowax/Divinylbenzene (CW-DVB) fibers were employed with the CW-DVB fibers being the most successful, as expected. Closed-end capillary tubes were used to hold the extraction media. Both aglycones were successfully extracted, derivatized, and detected by GC-MS. Solasodine always required derivatization, but solanidine did not. The same method was successfully applied to cholesterol so that it could be used as an internal standard. Also, using the closed-end capillary tubes, a two-phase extraction system was also investigated, whereby the fiber was only exposed to the phase in which it was presumed to be less damaged. However, in all cases, fiber degradation was significant, preventing the use of extended extraction times and limiting reuse of the fibers. However, the results represent a first look into the feasibility of the method. With the development of more suitable SPME phases, this method could potentially provide a complementary route for routine determinations of glycoalkaloids for both research and food quality control.Article Citation - WoS: 4Citation - Scopus: 4Mapping of Quantitative Trait Loci for the Nutritional Value of Fresh Market Tomato(Springer, 2023) Gürbüz Çolak, Nergiz; Tek Eken, Neslihan; Ülger, Mehmet; Frary, Anne; Doğanlar, SamiThe incidence of many diseases, such as cancer, cardiovascular diseases, and diabetes, is associated with malnutrition and an unbalanced daily diet. Vegetables are an important source of vitamins and essential compounds for human health. As a result, such metabolites have increasingly become the focus of breeding programs. Tomato is one of the most popular components of our daily diet. Therefore, the improvement of tomato's nutritional quality is an important goal. In the present study, we performed targeted metabolic profiling of an interspecific Solanum pimpinellifolium x S. lycopersicum inbred backcross line (IBL) population and identified quantitative trait loci responsible for the nutritional value of tomato. Transgressive segregation was apparent for many of the nutritional compounds such that some IBLs had extremely high levels of various amino acids and vitamins compared to their parents. A total of 117 QTLs for nutritional traits including 62 QTLs for amino acids, 18 QTLs for fatty acids, 12 QTLs for water-soluble vitamins, and 25 QTLs for fat-soluble vitamins were identified. Moreover, almost 24% of identified QTLs were confirmed in previous studies, and 40 possible gene candidates were found for 18 identified QTLs. These findings can help breeders to improve the nutritional value of tomato.