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Uğur, Deniz
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01. Izmir Institute of Technology
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Sustainable Development Goals
1NO POVERTY
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2ZERO HUNGER
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3GOOD HEALTH AND WELL-BEING
3
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4QUALITY EDUCATION
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5GENDER EQUALITY
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6CLEAN WATER AND SANITATION
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7AFFORDABLE AND CLEAN ENERGY
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8DECENT WORK AND ECONOMIC GROWTH
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9INDUSTRY, INNOVATION AND INFRASTRUCTURE
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10REDUCED INEQUALITIES
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11SUSTAINABLE CITIES AND COMMUNITIES
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12RESPONSIBLE CONSUMPTION AND PRODUCTION
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13CLIMATE ACTION
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14LIFE BELOW WATER
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15LIFE ON LAND
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16PEACE, JUSTICE AND STRONG INSTITUTIONS
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17PARTNERSHIPS FOR THE GOALS
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Scholarly Output
4
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1
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39125/1153
Supervised MSc Theses
1
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1
WoS Citation Count
7
Scopus Citation Count
7
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0
WoS Citations per Publication
1.75
Scopus Citations per Publication
1.75
Open Access Source
2
Supervised Theses
2
| Journal | Count |
|---|---|
| Journal of Cell Communication and Signaling | 1 |
| Molecular Biology of the Cell | 1 |
Current Page: 1 / 1
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4 results
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Now showing 1 - 4 of 4
Conference Object Role of Connexin 32 on Gap Junctions in Breast Cancer Cells With Varying Metastatic Potential.(American Society for Cell Biology, 2017) Özçivici, Engin; Meşe Özçivici, Gülistan; Uğur, Deniz; 03.01. Department of Bioengineering; 04.03. Department of Molecular Biology and Genetics; 01. Izmir Institute of Technology; 03. Faculty of Engineering; 04. Faculty of Science[No abstract available]Master Thesis Synthesis and Raft Polymerization of Arginine Containing Monomer To Investigate the Cell Membrane Translocation(Izmir Institute of Technology, 2014) Uğur, Deniz; Bulmuş Zareie, Volga; Uğur, Deniz; Bulmuş Zareie, Esma Volga; 01. Izmir Institute of Technology; 03.01. Department of Bioengineering; 03. Faculty of EngineeringIn this study, a higly cationic biosynthetic polymer, poly(Arginine Methyl Ester Methacrylamide) (p(AMME)) has been designed as a potential component of intracellular delivery systems for biological macromolecular therapeutics such as nucleic acids. Accordingly, an arginine derivative monomer; Arginine Methyl Ester Methacrylamide (AMME) was synthesized by the reaction of an active ester monomer, pentafluorophenylmethacrylate (PFMA) and the L-arginine methyl ester hydrochloride (AME) in the presence of excess triethyl amine. AMME was then polymerized via both conventional free radical polymerization and reversible addition-fragmentation chain transfer (RAFT) polymerization. The polymers p(AMME) were characterized via nuclear magnetic resonance and gel permeation chromatography techniques. The conventional free radical polymerization experiments yielded polymers with uncontrolled molecular weights and wide molecular weight distribution, whereas RAFT polymerizations performed both in aqueous solution and organic solvent yielded polymers with controlled molecular weights and narrow molecular weight distributions. The RAFT polymerization kinetic experiments showed the RAFT-controlled character of AMME polymerization in the presence of 4-cyano-4-(ethylthiocarbonylthioylthio) sulfanylpentanoic acid (ECT) as a RAFT agent. The cytotoxicity of P(AMME) before and after aminolysis was determined via MTT assay using A549 human lung cancer cell line. P(AMME) before aminolysis of the RAFT end-group displayed dose-dependent toxicity after 24 hours incubation with cells. It was highly toxic to cells at 25 μM concentration, killing almost more than 60% of cells after 24 hours incubation. On the other hand, the aminolyzed polymer has no significant toxicity in the concentration range studied (upto 500 μM), which was comparable with octaarginine, a widely used transfection agent. In conclusion, well-defined arginine-polymers synthesized in this study show potential for further investigations as potential components of intracellular delivery systems for therapeutics.Doctoral Thesis Investigating the Role of Connexin 32 in Breast Cancer(Izmir Institute of Technology, 2020) Meşe Özçivici, Gülistan; Uğur, Deniz; Meşe Özçivici, Gülistan; 04.03. Department of Molecular Biology and Genetics; 01. Izmir Institute of Technology; 04. Faculty of ScienceConnexins (Cx) are primary components of gap junctions, selectively allowing molecules to be exchanged between adjacent cells. Along with their channel forming functions, connexins play variety of roles in different stages in tumorigenesis, both dependent and independent of gap junctions in connexin and cancer dependent manner. Cytoplasmic accumulation of Cx32 was shown in some breast cancers; and compared to the primary tumors Cx32 is further upregulated in metastasis. However, the complete picture for the role of Cx32 in breast cancer remains to be elusive. Through overexpressing Cx32, its functions in breast cancer cells were investigated in Hs578T and MCF7 breast cancer cells. Cx32 overexpression increased cellular proliferation with significant increase in S phase in Hs578T cells with no significant change on MCF7 cells. Cx32 overexpression did not induce hemichannel activity in neither cell; it reduced gap junctional functions in Hs578T cells. Cx32 in both cells localized in cytoplasm did not form intercellular plaques, and decreased Cx43 expression. Cx32 overexpression reduced the migration and invasion capacity in both cells and in Hs578T cells showed reduction of mesenchymal and increase of epithelial marker expressions. In conclusion, Cx32 increases proliferation and decreases communication in Hs578T cells while not affecting MCF7 cells. It decreases aggressiveness and metastatic potential for both cell lines. Due to changes in gap junctional functions, Cx32 might be acting in relation to GJIC in Hs578T cells and outside of it in MCF7 cells. All in all, presence of Cx32 made Hs578T cells act similar to endogenously Cx32 expressing MCF7 cells.Article Citation - WoS: 7Citation - Scopus: 7Connexin 32 Overexpression Increases Proliferation, Reduces Gap Junctional Intercellular Communication, Motility and Epithelial-To Transition in Hs578t Breast Cancer Cells(Springer, 2022) Güngül, Taha Buğra; Meşe Özçivici, Gülistan; Uğur, Deniz; Özçivici, Engin; Yalçın Özuysal, Özden; Yücel, Simge; 03.01. Department of Bioengineering; 01. Izmir Institute of Technology; 04.03. Department of Molecular Biology and Genetics; 03. Faculty of Engineering; 04. Faculty of ScienceConnexins (Cx) are primary components of gap junctions that selectively allow molecules to be exchanged between adjacent cells, regulating multiple cellular functions. Along with their channel forming functions, connexins play a variety of roles in different stages of tumorigenesis and their roles in tumor initiation and progression is isoform- and tissue-specific. While Cx26 and Cx43 were downregulated during breast tumorigenesis, Cx32 was accumulated in the cytoplasm of the cells in lymph node metastasis of breast cancers and Cx32 was further upregulated in metastasis. Cx32's effect on cell proliferation, gap junctional communication, hemichannel activity, cellular motility and epithelial-to-mesenchymal transition (EMT) were investigated by overexpressing Cx32 in Hs578T and MCF7 breast cancer cells. Additionally, the expression and localization of Cx26 and Cx43 upon Cx32 overexpression were examined by Western blot and immunostaining experiments, respectively. We observed that MCF7 cells had endogenous Cx32 while Hs578T cells did not and when Cx32 was overexpressed in these cells, it caused a significant increase in the percentages of Hs578T cells at the S phase in addition to increasing their proliferation. Further, while Cx32 overexpression did not induce hemichannel activity in either cell, it decreased gap junctional communication between Hs578T cells. Additionally, Cx32 was mainly observed in the cytoplasm in both cells, where it did not form gap junction plaques but Cx32 overexpression reduced Cx43 levels without affecting Cx26. Moreover, migration and invasion potentials of Hs578T and migration in MCF7 were reduced upon Cx32 overexpression. Finally, the protein level of mesenchymal marker N-cadherin decreased while epithelial marker ZO-1 and E-cadherin increased in Hs578T cells. We observed that Cx32 overexpression altered cell proliferation, communication, migration and EMT in Hs578T, suggesting a tumor suppressor role in these cells while it had minor effects on MCF7 cells.