Regulation of Mrna Stability Through a Pentobarbital-Responsive Element

dc.contributor.author Akgül, Bünyamin
dc.contributor.author Tu, Chen-Pei D.
dc.coverage.doi 10.1016/j.abb.2006.10.026
dc.date.accessioned 2016-10-19T07:21:28Z
dc.date.available 2016-10-19T07:21:28Z
dc.date.issued 2007
dc.description.abstract Pentobarbital, a general anesthetic and non-genotoxic carcinogen, can induce gene expression by activating transcription. In the Drosophila glutathione S-transferase D21 (gstD21) gene, pentobarbital's regulatory influence extends to the level of mRNA turnover. Transcribed from an intronless gene, gstD21 mRNA is intrinsically very labile. But exposure to pentobarbital renders it stabilized beyond what can be attributed to transcriptional activation. We aim here to identify cis-acting element(s) of gstD21 mRNA as contributors to the molecule's pentobarbital-mediated stabilization. In the context of hsp70 5′UTR and the 3′UTR of act5C, gstD21 mRNA, minus its native UTRs, is stable. Maintaining the same context of heterologous UTRs, we can reconstitute using the full-length gstD21 sequence the inherent instability of gstD21 mRNA and its stabilization by pentobarbital. Transgenic flies that express these chimeric gstD21 mRNA exhibit decay intermediates lacking 3′UTR, which are not stabilized by PB treatment. The 3′UTR sequence, when inserted downstream from a reporter transcript, stabilizes it 1.6-fold under PB treatment. The analysis of the decay intermediates suggests a polysome-associated decay pattern. We propose a regulatory model that features a 59-nucleotide pentobarbital-responsive element (PBRE) in the 3′UTR of gstD21 mRNA. en_US
dc.description.sponsorship National Institute of Environmental Health Sciences (ES 02678) en_US
dc.identifier.citation Akgül, B., and Tu, C. P. D. (2007). Regulation of mRNA stability through a pentobarbital-responsive element. Archives of Biochemistry and Biophysics, 459(1), 143-150. doi:10.1016/j.abb.2006.10.026 en_US
dc.identifier.doi 10.1016/j.abb.2006.10.026 en_US
dc.identifier.doi 10.1016/j.abb.2006.10.026
dc.identifier.issn 0003-9861
dc.identifier.scopus 2-s2.0-33847105532
dc.identifier.uri http://doi.org/10.1016/j.abb.2006.10.026
dc.identifier.uri https://hdl.handle.net/11147/2277
dc.language.iso en en_US
dc.publisher Elsevier Ltd. en_US
dc.relation.ispartof Archives of Biochemistry and Biophysics en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject Heat shock en_US
dc.subject mRNA decay en_US
dc.subject Pentobarbital en_US
dc.subject Polysome en_US
dc.title Regulation of Mrna Stability Through a Pentobarbital-Responsive Element en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.institutional Akgül, Bünyamin
gdc.author.yokid 37475
gdc.bip.impulseclass C5
gdc.bip.influenceclass C5
gdc.bip.popularityclass C5
gdc.coar.access open access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department İzmir Institute of Technology. Molecular Biology and Genetics en_US
gdc.description.endpage 150 en_US
gdc.description.issue 1 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q2
gdc.description.startpage 143 en_US
gdc.description.volume 459 en_US
gdc.description.wosquality Q2
gdc.identifier.openalex W2098335336
gdc.identifier.pmid 17234150
gdc.identifier.wos WOS:000244846600018
gdc.index.type WoS
gdc.index.type Scopus
gdc.index.type PubMed
gdc.oaire.accesstype BRONZE
gdc.oaire.diamondjournal false
gdc.oaire.impulse 3.0
gdc.oaire.influence 2.7445857E-9
gdc.oaire.isgreen true
gdc.oaire.keywords Polysome
gdc.oaire.keywords RNA Stability
gdc.oaire.keywords Response Elements
gdc.oaire.keywords Animals, Genetically Modified
gdc.oaire.keywords Heat shock
gdc.oaire.keywords mRNA decay
gdc.oaire.keywords Gene Expression Regulation
gdc.oaire.keywords Animals
gdc.oaire.keywords Drosophila
gdc.oaire.keywords RNA, Messenger
gdc.oaire.keywords Pentobarbital
gdc.oaire.keywords Glutathione Transferase
gdc.oaire.popularity 4.1198658E-10
gdc.oaire.publicfunded false
gdc.oaire.sciencefields 0301 basic medicine
gdc.oaire.sciencefields 0303 health sciences
gdc.oaire.sciencefields 03 medical and health sciences
gdc.openalex.collaboration International
gdc.openalex.fwci 0.61137402
gdc.openalex.normalizedpercentile 0.63
gdc.opencitations.count 3
gdc.plumx.crossrefcites 2
gdc.plumx.mendeley 4
gdc.plumx.pubmedcites 1
gdc.plumx.scopuscites 3
gdc.scopus.citedcount 3
gdc.wos.citedcount 3
relation.isAuthorOfPublication.latestForDiscovery e4940f81-a137-4558-a403-cd13fc517ab4
relation.isOrgUnitOfPublication.latestForDiscovery 9af2b05f-28ac-4013-8abe-a4dfe192da5e

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